data_YPH
#
_chem_comp.id YPH
_chem_comp.name
1-(4-{2-[(6-{4-[2-(4-hydroxypiperidin-1-yl)ethoxy]phenyl}furo[2,3-d]pyrimidin-4-yl)amino]ethyl}phenyl)-3-phenylurea
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C34 H36 N6 O4"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2013-02-26
_chem_comp.pdbx_modified_date 2013-05-31
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 592.687
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code YPH
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 4JBP
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBJ
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
YPH C38 C38 C 0 1 N N N N N N 1.562 38.513 2.214 11.953 -1.274 1.377 C38 YPH 1
YPH C39 C39 C 0 1 N N N N N N 2.708 38.814 1.254 12.212 -2.548 0.569 C39 YPH 2
YPH C40 C40 C 0 1 N N N N N N 2.222 39.547 -0.012 12.500 -2.172 -0.888 C40 YPH 3
YPH O43 O43 O 0 1 N N N N N N 3.286 39.614 -0.972 12.688 -3.361 -1.659 O43 YPH 4
YPH C41 C41 C 0 1 N N N N N N 1.018 38.817 -0.628 11.314 -1.381 -1.446 C41 YPH 5
YPH C42 C42 C 0 1 N N N N N N -0.052 38.545 0.435 11.081 -0.141 -0.580 C42 YPH 6
YPH N35 N35 N 0 1 N N N N N N 0.530 37.731 1.516 10.809 -0.553 0.803 N35 YPH 7
YPH C36 C36 C 0 1 N N N N N N -0.522 37.318 2.451 10.444 0.601 1.634 C36 YPH 8
YPH C37 C37 C 0 1 N N N N N N 0.052 36.378 3.502 9.101 1.164 1.165 C37 YPH 9
YPH O34 O34 O 0 1 N N N N N N 0.832 35.313 2.870 8.075 0.193 1.384 O34 YPH 10
YPH C9 C9 C 0 1 Y N N N N N 1.490 34.508 3.743 6.813 0.536 1.018 C9 YPH 11
YPH C8 C8 C 0 1 Y N N N N N 2.332 33.513 3.251 6.569 1.782 0.455 C8 YPH 12
YPH C7 C7 C 0 1 Y N N N N N 3.010 32.674 4.133 5.290 2.134 0.083 C7 YPH 13
YPH C10 C10 C 0 1 Y N N N N N 1.318 34.662 5.120 5.770 -0.362 1.204 C10 YPH 14
YPH C11 C11 C 0 1 Y N N N N N 2.008 33.832 5.995 4.487 -0.017 0.835 C11 YPH 15
YPH C6 C6 C 0 1 Y N N N N N 2.849 32.826 5.514 4.237 1.237 0.273 C6 YPH 16
YPH C2 C2 C 0 1 Y N N N N N 3.507 32.008 6.438 2.864 1.610 -0.124 C2 YPH 17
YPH O3 O3 O 0 1 Y N N N N N 3.280 32.224 7.760 2.510 2.787 -0.679 O3 YPH 18
YPH C1 C1 C 0 1 Y N N N N N 4.399 31.002 6.297 1.771 0.819 0.008 C1 YPH 19
YPH C5 C5 C 0 1 Y N N N N N 4.732 30.571 7.530 0.648 1.595 -0.511 C5 YPH 20
YPH C4 C4 C 0 1 Y N N N N N 4.022 31.344 8.457 1.189 2.824 -0.927 C4 YPH 21
YPH N12 N12 N 0 1 Y N N N N N 4.136 31.147 9.772 0.370 3.732 -1.451 N12 YPH 22
YPH C13 C13 C 0 1 Y N N N N N 4.940 30.192 10.217 -0.917 3.487 -1.574 C13 YPH 23
YPH N14 N14 N 0 1 Y N N N N N 5.639 29.433 9.382 -1.467 2.348 -1.195 N14 YPH 24
YPH C15 C15 C 0 1 Y N N N N N 5.579 29.586 8.044 -0.730 1.375 -0.665 C15 YPH 25
YPH N44 N44 N 0 1 N N N N N N 6.333 28.787 7.276 -1.306 0.181 -0.275 N44 YPH 26
YPH C16 C16 C 0 1 N N N N N N 7.185 27.722 7.872 -2.747 -0.028 -0.445 C16 YPH 27
YPH C17 C17 C 0 1 N N N N N N 8.544 28.265 8.384 -3.124 -1.421 0.063 C17 YPH 28
YPH C18 C18 C 0 1 Y N N N N N 9.429 27.105 8.860 -4.605 -1.636 -0.112 C18 YPH 29
YPH C19 C19 C 0 1 Y N N N N N 9.282 26.607 10.149 -5.089 -2.184 -1.285 C19 YPH 30
YPH C20 C20 C 0 1 Y N N N N N 10.059 25.551 10.612 -6.446 -2.383 -1.447 C20 YPH 31
YPH C23 C23 C 0 1 Y N N N N N 10.372 26.527 8.018 -5.477 -1.288 0.904 C23 YPH 32
YPH C22 C22 C 0 1 Y N N N N N 11.142 25.459 8.476 -6.835 -1.485 0.748 C22 YPH 33
YPH C21 C21 C 0 1 Y N N N N N 10.988 24.955 9.774 -7.325 -2.030 -0.431 C21 YPH 34
YPH N24 N24 N 0 1 N N N N N N 11.744 23.945 10.247 -8.700 -2.230 -0.593 N24 YPH 35
YPH C25 C25 C 0 1 N N N N N N 11.934 22.772 9.615 -9.576 -1.355 -0.060 C25 YPH 36
YPH O33 O33 O 0 1 N N N N N N 11.393 22.511 8.546 -9.175 -0.438 0.630 O33 YPH 37
YPH N26 N26 N 0 1 N N N N N N 12.755 21.900 10.222 -10.896 -1.496 -0.293 N26 YPH 38
YPH C27 C27 C 0 1 Y N N N N N 13.086 20.689 9.752 -11.795 -0.529 0.172 C27 YPH 39
YPH C28 C28 C 0 1 Y N N N N N 14.017 19.940 10.475 -11.422 0.808 0.209 C28 YPH 40
YPH C29 C29 C 0 1 Y N N N N N 14.417 18.675 10.045 -12.312 1.759 0.668 C29 YPH 41
YPH C30 C30 C 0 1 Y N N N N N 13.887 18.147 8.871 -13.574 1.381 1.089 C30 YPH 42
YPH C31 C31 C 0 1 Y N N N N N 12.957 18.888 8.142 -13.948 0.051 1.053 C31 YPH 43
YPH C32 C32 C 0 1 Y N N N N N 12.560 20.154 8.578 -13.065 -0.905 0.590 C32 YPH 44
YPH H1 H1 H 0 1 N N N N N N 1.943 37.936 3.070 11.733 -1.539 2.411 H1 YPH 45
YPH H2 H2 H 0 1 N N N N N N 1.126 39.457 2.573 12.837 -0.637 1.344 H2 YPH 46
YPH H3 H3 H 0 1 N N N N N N 3.181 37.866 0.957 13.071 -3.075 0.985 H3 YPH 47
YPH H4 H4 H 0 1 N N N N N N 3.446 39.446 1.769 11.334 -3.191 0.612 H4 YPH 48
YPH H5 H5 H 0 1 N N N N N N 1.908 40.562 0.271 13.401 -1.561 -0.935 H5 YPH 49
YPH H6 H6 H 0 1 N N N N N N 4.030 40.065 -0.590 12.875 -3.198 -2.593 H6 YPH 50
YPH H7 H7 H 0 1 N N N N N N 0.586 39.441 -1.424 11.531 -1.074 -2.470 H7 YPH 51
YPH H8 H8 H 0 1 N N N N N N 1.355 37.861 -1.054 10.422 -2.006 -1.435 H8 YPH 52
YPH H9 H9 H 0 1 N N N N N N -0.411 39.500 0.847 11.969 0.490 -0.603 H9 YPH 53
YPH H10 H10 H 0 1 N N N N N N -0.893 38.002 -0.021 10.229 0.417 -0.967 H10 YPH 54
YPH H12 H12 H 0 1 N N N N N N -0.938 38.208 2.947 10.363 0.289 2.675 H12 YPH 55
YPH H13 H13 H 0 1 N N N N N N -1.319 36.801 1.897 11.211 1.371 1.545 H13 YPH 56
YPH H14 H14 H 0 1 N N N N N N 0.703 36.949 4.181 8.870 2.069 1.726 H14 YPH 57
YPH H15 H15 H 0 1 N N N N N N -0.773 35.930 4.076 9.157 1.399 0.102 H15 YPH 58
YPH H16 H16 H 0 1 N N N N N N 2.459 33.392 2.185 7.384 2.476 0.309 H16 YPH 59
YPH H17 H17 H 0 1 N N N N N N 3.662 31.904 3.749 5.101 3.104 -0.354 H17 YPH 60
YPH H18 H18 H 0 1 N N N N N N 0.653 35.422 5.503 5.964 -1.331 1.638 H18 YPH 61
YPH H19 H19 H 0 1 N N N N N N 1.893 33.966 7.060 3.677 -0.716 0.979 H19 YPH 62
YPH H20 H20 H 0 1 N N N N N N 4.777 30.613 5.363 1.738 -0.182 0.414 H20 YPH 63
YPH H21 H21 H 0 1 N N N N N N 5.028 30.028 11.281 -1.550 4.249 -2.004 H21 YPH 64
YPH H22 H22 H 0 1 N N N N N N 6.947 29.386 6.762 -0.757 -0.520 0.111 H22 YPH 65
YPH H23 H23 H 0 1 N N N N N N 6.645 27.270 8.717 -3.292 0.725 0.123 H23 YPH 66
YPH H24 H24 H 0 1 N N N N N N 7.377 26.955 7.107 -3.004 0.056 -1.500 H24 YPH 67
YPH H25 H25 H 0 1 N N N N N N 9.053 28.800 7.569 -2.578 -2.175 -0.505 H25 YPH 68
YPH H26 H26 H 0 1 N N N N N N 8.368 28.956 9.222 -2.866 -1.505 1.119 H26 YPH 69
YPH H27 H27 H 0 1 N N N N N N 8.548 27.050 10.806 -4.406 -2.458 -2.075 H27 YPH 70
YPH H28 H28 H 0 1 N N N N N N 9.939 25.195 11.625 -6.824 -2.811 -2.364 H28 YPH 71
YPH H29 H29 H 0 1 N N N N N N 10.507 26.903 7.015 -5.095 -0.864 1.821 H29 YPH 72
YPH H30 H30 H 0 1 N N N N N N 11.872 25.011 7.817 -7.515 -1.214 1.542 H30 YPH 73
YPH H31 H31 H 0 1 N N N N N N 12.196 24.076 11.130 -9.024 -2.999 -1.088 H31 YPH 74
YPH H32 H32 H 0 1 N N N N N N 13.152 22.177 11.097 -11.222 -2.267 -0.782 H32 YPH 75
YPH H33 H33 H 0 1 N N N N N N 14.435 20.348 11.384 -10.436 1.103 -0.119 H33 YPH 76
YPH H34 H34 H 0 1 N N N N N N 15.134 18.108 10.620 -12.022 2.799 0.697 H34 YPH 77
YPH H35 H35 H 0 1 N N N N N N 14.194 17.170 8.527 -14.268 2.127 1.447 H35 YPH 78
YPH H36 H36 H 0 1 N N N N N N 12.541 18.479 7.233 -14.936 -0.241 1.379 H36 YPH 79
YPH H37 H37 H 0 1 N N N N N N 11.843 20.720 8.003 -13.358 -1.944 0.563 H37 YPH 80
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
YPH O43 C40 SING N N 1
YPH C41 C40 SING N N 2
YPH C41 C42 SING N N 3
YPH C40 C39 SING N N 4
YPH C42 N35 SING N N 5
YPH C39 C38 SING N N 6
YPH N35 C38 SING N N 7
YPH N35 C36 SING N N 8
YPH C36 C37 SING N N 9
YPH O34 C37 SING N N 10
YPH O34 C9 SING N N 11
YPH C8 C9 DOUB Y N 12
YPH C8 C7 SING Y N 13
YPH C9 C10 SING Y N 14
YPH C7 C6 DOUB Y N 15
YPH C10 C11 DOUB Y N 16
YPH C6 C11 SING Y N 17
YPH C6 C2 SING N N 18
YPH C1 C2 DOUB Y N 19
YPH C1 C5 SING Y N 20
YPH C2 O3 SING Y N 21
YPH N44 C16 SING N N 22
YPH N44 C15 SING N N 23
YPH C5 C15 SING Y N 24
YPH C5 C4 DOUB Y N 25
YPH O3 C4 SING Y N 26
YPH C16 C17 SING N N 27
YPH C23 C22 DOUB Y N 28
YPH C23 C18 SING Y N 29
YPH C15 N14 DOUB Y N 30
YPH C31 C32 DOUB Y N 31
YPH C31 C30 SING Y N 32
YPH C17 C18 SING N N 33
YPH C4 N12 SING Y N 34
YPH C22 C21 SING Y N 35
YPH O33 C25 DOUB N N 36
YPH C32 C27 SING Y N 37
YPH C18 C19 DOUB Y N 38
YPH C30 C29 DOUB Y N 39
YPH N14 C13 SING Y N 40
YPH C25 N26 SING N N 41
YPH C25 N24 SING N N 42
YPH C27 N26 SING N N 43
YPH C27 C28 DOUB Y N 44
YPH N12 C13 DOUB Y N 45
YPH C21 N24 SING N N 46
YPH C21 C20 DOUB Y N 47
YPH C29 C28 SING Y N 48
YPH C19 C20 SING Y N 49
YPH C38 H1 SING N N 50
YPH C38 H2 SING N N 51
YPH C39 H3 SING N N 52
YPH C39 H4 SING N N 53
YPH C40 H5 SING N N 54
YPH O43 H6 SING N N 55
YPH C41 H7 SING N N 56
YPH C41 H8 SING N N 57
YPH C42 H9 SING N N 58
YPH C42 H10 SING N N 59
YPH C36 H12 SING N N 60
YPH C36 H13 SING N N 61
YPH C37 H14 SING N N 62
YPH C37 H15 SING N N 63
YPH C8 H16 SING N N 64
YPH C7 H17 SING N N 65
YPH C10 H18 SING N N 66
YPH C11 H19 SING N N 67
YPH C1 H20 SING N N 68
YPH C13 H21 SING N N 69
YPH N44 H22 SING N N 70
YPH C16 H23 SING N N 71
YPH C16 H24 SING N N 72
YPH C17 H25 SING N N 73
YPH C17 H26 SING N N 74
YPH C19 H27 SING N N 75
YPH C20 H28 SING N N 76
YPH C23 H29 SING N N 77
YPH C22 H30 SING N N 78
YPH N24 H31 SING N N 79
YPH N26 H32 SING N N 80
YPH C28 H33 SING N N 81
YPH C29 H34 SING N N 82
YPH C30 H35 SING N N 83
YPH C31 H36 SING N N 84
YPH C32 H37 SING N N 85
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
YPH SMILES ACDLabs 12.01 O=C(Nc1ccccc1)Nc2ccc(cc2)CCNc3ncnc4oc(cc34)c6ccc(OCCN5CCC(O)CC5)cc6
YPH InChI InChI 1.03 InChI=1S/C34H36N6O4/c41-28-15-18-40(19-16-28)20-21-43-29-12-8-25(9-13-29)31-22-30-32(36-23-37-33(30)44-31)35-17-14-24-6-10-27(11-7-24)39-34(42)38-26-4-2-1-3-5-26/h1-13,22-23,28,41H,14-21H2,(H,35,36,37)(H2,38,39,42)
YPH InChIKey InChI 1.03 WEVRAOPLGYJTLY-UHFFFAOYSA-N
YPH SMILES_CANONICAL CACTVS 3.370 OC1CCN(CCOc2ccc(cc2)c3oc4ncnc(NCCc5ccc(NC(=O)Nc6ccccc6)cc5)c4c3)CC1
YPH SMILES CACTVS 3.370 OC1CCN(CCOc2ccc(cc2)c3oc4ncnc(NCCc5ccc(NC(=O)Nc6ccccc6)cc5)c4c3)CC1
YPH SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 c1ccc(cc1)NC(=O)Nc2ccc(cc2)CCNc3c4cc(oc4ncn3)c5ccc(cc5)OCCN6CCC(CC6)O
YPH SMILES "OpenEye OEToolkits" 1.7.6 c1ccc(cc1)NC(=O)Nc2ccc(cc2)CCNc3c4cc(oc4ncn3)c5ccc(cc5)OCCN6CCC(CC6)O
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
YPH "SYSTEMATIC NAME" ACDLabs 12.01 1-(4-{2-[(6-{4-[2-(4-hydroxypiperidin-1-yl)ethoxy]phenyl}furo[2,3-d]pyrimidin-4-yl)amino]ethyl}phenyl)-3-phenylurea
YPH "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 1-[4-[2-[[6-[4-[2-(4-oxidanylpiperidin-1-yl)ethoxy]phenyl]furo[2,3-d]pyrimidin-4-yl]amino]ethyl]phenyl]-3-phenyl-urea
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
YPH 'Create component' 2013-02-26 PDBJ
YPH 'Initial release' 2013-06-05 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
YPH C38 C 26.187 -6.851 1
YPH C39 C 26.937 -8.149 2
YPH C40 C 26.187 -9.448 3
YPH O43 O 26.937 -10.748 4
YPH C41 C 24.687 -9.448 5
YPH C42 C 23.937 -8.149 6
YPH N35 N 24.687 -6.851 7
YPH C36 C 23.937 -5.551 8
YPH C37 C 22.437 -5.551 9
YPH O34 O 21.687 -4.252 10
YPH C9 C 20.187 -4.252 11
YPH C8 C 19.437 -2.953 12
YPH C7 C 17.937 -2.953 13
YPH C10 C 19.437 -5.551 14
YPH C11 C 17.937 -5.551 15
YPH C6 C 17.187 -4.252 16
YPH C2 C 15.687 -4.252 17
YPH O3 O 14.812 -5.460 18
YPH C1 C 14.812 -3.045 19
YPH C5 C 13.392 -3.502 20
YPH C4 C 13.392 -5.002 21
YPH N12 N 12.093 -5.752 22
YPH C13 C 10.794 -5.002 23
YPH N14 N 10.794 -3.502 24
YPH C15 C 12.093 -2.752 25
YPH N44 N 12.093 -1.252 26
YPH C16 C 10.794 -0.502 27
YPH C17 C 10.794 0.998 28
YPH C18 C 9.495 1.748 29
YPH C19 C 9.495 3.248 30
YPH C20 C 8.196 3.998 31
YPH C23 C 8.196 0.998 32
YPH C22 C 6.897 1.748 33
YPH C21 C 6.897 3.248 34
YPH N24 N 5.598 3.998 35
YPH C25 C 5.598 5.498 36
YPH O33 O 6.897 6.248 37
YPH N26 N 4.299 6.248 38
YPH C27 C 4.299 7.748 39
YPH C28 C 3.000 8.498 40
YPH C29 C 3.000 9.998 41
YPH C30 C 4.299 10.748 42
YPH C31 C 5.598 9.998 43
YPH C32 C 5.598 8.498 44
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
YPH O43 C40 SINGLE NONE 1
YPH C41 C40 SINGLE NONE 2
YPH C41 C42 SINGLE NONE 3
YPH C40 C39 SINGLE NONE 4
YPH C42 N35 SINGLE NONE 5
YPH C39 C38 SINGLE NONE 6
YPH N35 C38 SINGLE NONE 7
YPH N35 C36 SINGLE NONE 8
YPH C36 C37 SINGLE NONE 9
YPH O34 C37 SINGLE NONE 10
YPH O34 C9 SINGLE NONE 11
YPH C8 C9 DOUBLE NONE 12
YPH C8 C7 SINGLE NONE 13
YPH C9 C10 SINGLE NONE 14
YPH C7 C6 DOUBLE NONE 15
YPH C10 C11 DOUBLE NONE 16
YPH C6 C11 SINGLE NONE 17
YPH C6 C2 SINGLE NONE 18
YPH C1 C2 DOUBLE NONE 19
YPH C1 C5 SINGLE NONE 20
YPH C2 O3 SINGLE NONE 21
YPH N44 C16 SINGLE NONE 22
YPH N44 C15 SINGLE NONE 23
YPH C5 C15 SINGLE NONE 24
YPH C5 C4 DOUBLE NONE 25
YPH O3 C4 SINGLE NONE 26
YPH C16 C17 SINGLE NONE 27
YPH C23 C22 DOUBLE NONE 28
YPH C23 C18 SINGLE NONE 29
YPH C15 N14 DOUBLE NONE 30
YPH C31 C32 DOUBLE NONE 31
YPH C31 C30 SINGLE NONE 32
YPH C17 C18 SINGLE NONE 33
YPH C4 N12 SINGLE NONE 34
YPH C22 C21 SINGLE NONE 35
YPH O33 C25 DOUBLE NONE 36
YPH C32 C27 SINGLE NONE 37
YPH C18 C19 DOUBLE NONE 38
YPH C30 C29 DOUBLE NONE 39
YPH N14 C13 SINGLE NONE 40
YPH C25 N26 SINGLE NONE 41
YPH C25 N24 SINGLE NONE 42
YPH C27 N26 SINGLE NONE 43
YPH C27 C28 DOUBLE NONE 44
YPH N12 C13 DOUBLE NONE 45
YPH C21 N24 SINGLE NONE 46
YPH C21 C20 DOUBLE NONE 47
YPH C29 C28 SINGLE NONE 48
YPH C19 C20 SINGLE NONE 49
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
YPH MurckoScaffold S1 scaffold O=C(Nc1ccccc1)Nc1ccc(CCNc2ncnc3oc(-c4ccc(OCCN5CCCCC5)cc4)cc23)cc1 InChI=1S/C34H36N6O3/c41-34(38-27-7-3-1-4-8-27)39-28-13-9-25(10-14-28)17-18-35-32-30-23-31(43-33(30)37-24-36-32)26-11-15-29(16-12-26)42-22-21-40-19-5-2-6-20-40/h1,3-4,7-16,23-24H,2,5-6,17-22H2,(H,35,36,37)(H2,38,39,41) IVIDJNDYMLDNQO-UHFFFAOYSA-N
YPH furan F1 fragment c1ccoc1 InChI=1S/C4H4O/c1-2-4-5-3-1/h1-4H YLQBMQCUIZJEEH-UHFFFAOYSA-N
YPH phenyl F2 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
YPH pyrimidine F3 fragment c1cncnc1 InChI=1S/C4H4N2/c1-2-5-4-6-3-1/h1-4H CZPWVGJYEJSRLH-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
YPH C38 S1 1
YPH C39 S1 1
YPH C40 S1 1
YPH C41 S1 1
YPH C42 S1 1
YPH N35 S1 1
YPH C36 S1 1
YPH C37 S1 1
YPH O34 S1 1
YPH C9 S1 1
YPH C8 S1 1
YPH C7 S1 1
YPH C10 S1 1
YPH C11 S1 1
YPH C6 S1 1
YPH C2 S1 1
YPH O3 S1 1
YPH C1 S1 1
YPH C5 S1 1
YPH C4 S1 1
YPH N12 S1 1
YPH C13 S1 1
YPH N14 S1 1
YPH C15 S1 1
YPH N44 S1 1
YPH C16 S1 1
YPH C17 S1 1
YPH C18 S1 1
YPH C19 S1 1
YPH C20 S1 1
YPH C23 S1 1
YPH C22 S1 1
YPH C21 S1 1
YPH N24 S1 1
YPH C25 S1 1
YPH O33 S1 1
YPH N26 S1 1
YPH C27 S1 1
YPH C28 S1 1
YPH C29 S1 1
YPH C30 S1 1
YPH C31 S1 1
YPH C32 S1 1
YPH C2 F1 1
YPH C1 F1 1
YPH C5 F1 1
YPH C4 F1 1
YPH O3 F1 1
YPH C9 F2 1
YPH C8 F2 1
YPH C7 F2 1
YPH C6 F2 1
YPH C11 F2 1
YPH C10 F2 1
YPH C18 F2 2
YPH C23 F2 2
YPH C22 F2 2
YPH C21 F2 2
YPH C20 F2 2
YPH C19 F2 2
YPH C27 F2 3
YPH C32 F2 3
YPH C31 F2 3
YPH C30 F2 3
YPH C29 F2 3
YPH C28 F2 3
YPH C5 F3 1
YPH C15 F3 1
YPH N14 F3 1
YPH C13 F3 1
YPH N12 F3 1
YPH C4 F3 1
#
_pdbe_chem_comp_rdkit_properties.comp_id YPH
_pdbe_chem_comp_rdkit_properties.exactmw 592.280
_pdbe_chem_comp_rdkit_properties.amw 592.700
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 10
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 4
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 12
_pdbe_chem_comp_rdkit_properties.NumHBD 4
_pdbe_chem_comp_rdkit_properties.NumHBA 8
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 44
_pdbe_chem_comp_rdkit_properties.NumAtoms 80
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 10
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 2
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.265
_pdbe_chem_comp_rdkit_properties.NumRings 6
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 5
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 3
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 306.480
_pdbe_chem_comp_rdkit_properties.tpsa 124.780
_pdbe_chem_comp_rdkit_properties.CrippenClogP 3.557
_pdbe_chem_comp_rdkit_properties.CrippenMR 165.259
_pdbe_chem_comp_rdkit_properties.chi0v 21.316
_pdbe_chem_comp_rdkit_properties.chi1v 11.632
_pdbe_chem_comp_rdkit_properties.chi2v 4.741
_pdbe_chem_comp_rdkit_properties.chi3v 4.741
_pdbe_chem_comp_rdkit_properties.chi4v 2.929
_pdbe_chem_comp_rdkit_properties.chi0n 57.316
_pdbe_chem_comp_rdkit_properties.chi1n 29.382
_pdbe_chem_comp_rdkit_properties.chi2n 4.741
_pdbe_chem_comp_rdkit_properties.chi3n 4.741
_pdbe_chem_comp_rdkit_properties.chi4n 2.929
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -4.930
_pdbe_chem_comp_rdkit_properties.kappa1 8.832
_pdbe_chem_comp_rdkit_properties.kappa2 14.027
_pdbe_chem_comp_rdkit_properties.kappa3 7.714
_pdbe_chem_comp_rdkit_properties.Phi 2.816
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
YPH UniChem ChEMBL CHEMBL2398642
YPH UniChem PDBe YPH
YPH UniChem ZINC ZINC000096272623
YPH UniChem SureChEMBL SCHEMBL759330
YPH UniChem BindingDb 50436695
YPH UniChem PubChem 57946373
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
YPH C38 -10.218 2.367 -0.001 ETKDGv3 1
YPH C39 -10.772 3.567 -0.779 ETKDGv3 2
YPH C40 -10.992 3.215 -2.267 ETKDGv3 3
YPH O43 -12.309 2.772 -2.472 ETKDGv3 4
YPH C41 -10.016 2.125 -2.753 ETKDGv3 5
YPH C42 -8.698 2.174 -1.969 ETKDGv3 6
YPH N35 -8.891 1.928 -0.514 ETKDGv3 7
YPH C36 -8.613 0.517 -0.163 ETKDGv3 8
YPH C37 -8.473 0.333 1.355 ETKDGv3 9
YPH O34 -7.993 -0.976 1.662 ETKDGv3 10
YPH C9 -6.661 -1.400 1.532 ETKDGv3 11
YPH C8 -6.373 -2.682 1.788 ETKDGv3 12
YPH C7 -4.988 -3.183 1.668 ETKDGv3 13
YPH C10 -5.563 -0.481 1.128 ETKDGv3 14
YPH C11 -4.308 -0.933 1.018 ETKDGv3 15
YPH C6 -3.991 -2.359 1.300 ETKDGv3 16
YPH C2 -2.609 -2.883 1.184 ETKDGv3 17
YPH O3 -2.270 -4.216 1.444 ETKDGv3 18
YPH C1 -1.522 -2.185 0.827 ETKDGv3 19
YPH C5 -0.418 -3.134 0.861 ETKDGv3 20
YPH C4 -0.907 -4.293 1.225 ETKDGv3 21
YPH N12 -0.080 -5.454 1.362 ETKDGv3 22
YPH C13 1.199 -5.345 1.115 ETKDGv3 23
YPH N14 1.763 -4.073 0.711 ETKDGv3 24
YPH C15 1.020 -3.004 0.584 ETKDGv3 25
YPH N44 1.587 -1.750 0.179 ETKDGv3 26
YPH C16 3.017 -1.571 -0.064 ETKDGv3 27
YPH C17 3.781 -1.501 1.261 ETKDGv3 28
YPH C18 5.252 -1.298 1.013 ETKDGv3 29
YPH C19 6.070 -2.350 0.838 ETKDGv3 30
YPH C20 7.505 -2.139 0.558 ETKDGv3 31
YPH C23 5.800 0.075 0.905 ETKDGv3 32
YPH C22 7.099 0.266 0.642 ETKDGv3 33
YPH C21 8.003 -0.897 0.439 ETKDGv3 34
YPH N24 9.406 -0.716 0.177 ETKDGv3 35
YPH C25 9.946 0.392 -0.557 ETKDGv3 36
YPH O33 9.188 1.126 -1.248 ETKDGv3 37
YPH N26 11.365 0.608 -0.568 ETKDGv3 38
YPH C27 11.993 1.797 -1.078 ETKDGv3 39
YPH C28 13.225 1.722 -1.611 ETKDGv3 40
YPH C29 13.893 2.935 -2.128 ETKDGv3 41
YPH C30 13.282 4.122 -2.051 ETKDGv3 42
YPH C31 11.942 4.223 -1.438 ETKDGv3 43
YPH C32 11.331 3.126 -0.972 ETKDGv3 44
YPH H1 -10.112 2.666 1.063 ETKDGv3 45
YPH H2 -10.965 1.542 -0.052 ETKDGv3 46
YPH H3 -10.047 4.407 -0.700 ETKDGv3 47
YPH H4 -11.723 3.907 -0.315 ETKDGv3 48
YPH H5 -10.811 4.135 -2.872 ETKDGv3 49
YPH H6 -12.888 3.579 -2.463 ETKDGv3 50
YPH H7 -10.467 1.117 -2.623 ETKDGv3 51
YPH H8 -9.811 2.265 -3.837 ETKDGv3 52
YPH H9 -8.241 3.179 -2.098 ETKDGv3 53
YPH H10 -7.980 1.457 -2.424 ETKDGv3 54
YPH H12 -9.412 -0.153 -0.554 ETKDGv3 55
YPH H13 -7.656 0.196 -0.628 ETKDGv3 56
YPH H14 -7.807 1.106 1.794 ETKDGv3 57
YPH H15 -9.470 0.445 1.828 ETKDGv3 58
YPH H16 -7.158 -3.366 2.085 ETKDGv3 59
YPH H17 -4.799 -4.227 1.882 ETKDGv3 60
YPH H18 -5.760 0.561 0.917 ETKDGv3 61
YPH H19 -3.533 -0.240 0.722 ETKDGv3 62
YPH H20 -1.466 -1.138 0.568 ETKDGv3 63
YPH H21 1.840 -6.209 1.212 ETKDGv3 64
YPH H22 0.952 -0.939 0.002 ETKDGv3 65
YPH H23 3.173 -0.622 -0.624 ETKDGv3 66
YPH H24 3.400 -2.404 -0.693 ETKDGv3 67
YPH H25 3.620 -2.433 1.845 ETKDGv3 68
YPH H26 3.386 -0.659 1.869 ETKDGv3 69
YPH H27 5.688 -3.362 0.894 ETKDGv3 70
YPH H28 8.147 -3.002 0.431 ETKDGv3 71
YPH H29 5.153 0.930 1.052 ETKDGv3 72
YPH H30 7.485 1.276 0.606 ETKDGv3 73
YPH H31 10.068 -1.464 0.485 ETKDGv3 74
YPH H32 11.977 -0.174 -0.240 ETKDGv3 75
YPH H33 13.736 0.770 -1.681 ETKDGv3 76
YPH H34 14.878 2.859 -2.570 ETKDGv3 77
YPH H35 13.770 5.011 -2.428 ETKDGv3 78
YPH H36 11.462 5.190 -1.353 ETKDGv3 79
YPH H37 10.367 3.225 -0.493 ETKDGv3 80
#