data_YTP
#
_chem_comp.id YTP
_chem_comp.name 1-(4-hydroxy-3-methylphenyl)ethanone
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C9 H10 O2"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2010-09-07
_chem_comp.pdbx_modified_date 2011-08-26
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 150.174
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code YTP
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 3OOG
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
YTP C1 C1 C 0 1 Y N N N N N 32.422 10.174 -2.797 -1.842 -0.496 -0.024 C1 YTP 1
YTP C2 C2 C 0 1 Y N N N N N 32.202 10.040 -1.426 -1.004 -1.606 -0.047 C2 YTP 2
YTP C3 C3 C 0 1 Y N N N N N 30.894 9.994 -0.924 0.352 -1.444 -0.035 C3 YTP 3
YTP C4 C4 C 0 1 Y N N N N N 29.812 10.085 -1.813 0.904 -0.158 -0.002 C4 YTP 4
YTP C5 C5 C 0 1 Y N N N N N 30.036 10.224 -3.189 0.060 0.960 0.020 C5 YTP 5
YTP C6 C6 C 0 1 Y N N N N N 31.341 10.262 -3.682 -1.305 0.786 0.009 C6 YTP 6
YTP C7 C7 C 0 1 N N N N N N 28.389 9.984 -1.304 2.362 0.019 0.010 C7 YTP 7
YTP O8 O8 O 0 1 N N N N N N 28.167 9.916 -0.110 3.089 -0.948 0.093 O8 YTP 8
YTP C9 C9 C 0 1 N N N N N N 27.237 9.964 -2.273 2.954 1.401 -0.079 C9 YTP 9
YTP C10 C10 C 0 1 N N N N N N 31.591 10.400 -5.187 -2.217 1.986 0.032 C10 YTP 10
YTP O11 O11 O 0 1 N N N N N N 33.718 10.226 -3.314 -3.188 -0.665 -0.041 O11 YTP 11
YTP H2 H2 H 0 1 N N N N N N 33.041 9.972 -0.750 -1.428 -2.599 -0.072 H2 YTP 12
YTP H3 H3 H 0 1 N N N N N N 30.721 9.890 0.137 0.999 -2.309 -0.052 H3 YTP 13
YTP H5 H5 H 0 1 N N N N N N 29.199 10.302 -3.868 0.480 1.955 0.046 H5 YTP 14
YTP H9 H9 H 0 1 N N N N N N 26.291 9.885 -1.717 2.154 2.142 -0.055 H9 YTP 15
YTP H9A H9A H 0 1 N N N N N N 27.239 10.892 -2.863 3.625 1.564 0.764 H9A YTP 16
YTP H9B H9B H 0 1 N N N N N N 27.340 9.100 -2.947 3.511 1.498 -1.011 H9B YTP 17
YTP H10 H10 H 0 1 N N N N N N 31.645 9.401 -5.643 -2.443 2.250 1.065 H10 YTP 18
YTP H10A H10A H 0 0 N N N N N N 30.768 10.968 -5.645 -1.726 2.826 -0.460 H10A YTP 19
YTP H10B H10B H 0 0 N N N N N N 32.540 10.931 -5.354 -3.143 1.748 -0.493 H10B YTP 20
YTP HO11 HO11 H 0 0 N N N N N N 34.346 10.155 -2.604 -3.586 -0.737 0.837 HO11 YTP 21
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
YTP C6 C1 DOUB Y N 1
YTP O11 C1 SING N N 2
YTP C1 C2 SING Y N 3
YTP C2 C3 DOUB Y N 4
YTP C2 H2 SING N N 5
YTP C4 C3 SING Y N 6
YTP C3 H3 SING N N 7
YTP C5 C4 DOUB Y N 8
YTP C4 C7 SING N N 9
YTP C6 C5 SING Y N 10
YTP C5 H5 SING N N 11
YTP C10 C6 SING N N 12
YTP C9 C7 SING N N 13
YTP C7 O8 DOUB N N 14
YTP C9 H9 SING N N 15
YTP C9 H9A SING N N 16
YTP C9 H9B SING N N 17
YTP C10 H10 SING N N 18
YTP C10 H10A SING N N 19
YTP C10 H10B SING N N 20
YTP O11 HO11 SING N N 21
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
YTP SMILES ACDLabs 12.01 O=C(c1ccc(O)c(c1)C)C
YTP SMILES_CANONICAL CACTVS 3.370 CC(=O)c1ccc(O)c(C)c1
YTP SMILES CACTVS 3.370 CC(=O)c1ccc(O)c(C)c1
YTP SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 Cc1cc(ccc1O)C(=O)C
YTP SMILES "OpenEye OEToolkits" 1.7.0 Cc1cc(ccc1O)C(=O)C
YTP InChI InChI 1.03 InChI=1S/C9H10O2/c1-6-5-8(7(2)10)3-4-9(6)11/h3-5,11H,1-2H3
YTP InChIKey InChI 1.03 LXBHHIZIQVZGFN-UHFFFAOYSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
YTP "SYSTEMATIC NAME" ACDLabs 12.01 1-(4-hydroxy-3-methylphenyl)ethanone
YTP "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.0 1-(4-hydroxy-3-methyl-phenyl)ethanone
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
YTP 'Create component' 2010-09-07 RCSB
YTP 'Modify aromatic_flag' 2011-06-04 RCSB
YTP 'Modify descriptor' 2011-06-04 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
YTP C1 C 5.598 -1.643 1
YTP C2 C 6.897 -0.892 2
YTP C3 C 6.897 0.608 3
YTP C4 C 5.598 1.357 4
YTP C5 C 4.299 0.608 5
YTP C6 C 4.299 -0.892 6
YTP C7 C 5.598 2.857 7
YTP O8 O 6.897 3.607 8
YTP C9 C 4.299 3.607 9
YTP C10 C 3.000 -1.643 10
YTP O11 O 5.598 -3.143 11
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
YTP C6 C1 DOUBLE NONE 1
YTP O11 C1 SINGLE NONE 2
YTP C1 C2 SINGLE NONE 3
YTP C2 C3 DOUBLE NONE 4
YTP C4 C3 SINGLE NONE 5
YTP C5 C4 DOUBLE NONE 6
YTP C4 C7 SINGLE NONE 7
YTP C6 C5 SINGLE NONE 8
YTP C10 C6 SINGLE NONE 9
YTP C9 C7 SINGLE NONE 10
YTP C7 O8 DOUBLE NONE 11
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
YTP MurckoScaffold S1 scaffold c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
YTP phenyl F1 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
YTP C1 S1 1
YTP C2 S1 1
YTP C3 S1 1
YTP C4 S1 1
YTP C5 S1 1
YTP C6 S1 1
YTP C1 F1 1
YTP C6 F1 1
YTP C5 F1 1
YTP C4 F1 1
YTP C3 F1 1
YTP C2 F1 1
#
_pdbe_chem_comp_rdkit_properties.comp_id YTP
_pdbe_chem_comp_rdkit_properties.exactmw 150.068
_pdbe_chem_comp_rdkit_properties.amw 150.177
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 2
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 1
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 4
_pdbe_chem_comp_rdkit_properties.NumHBD 1
_pdbe_chem_comp_rdkit_properties.NumHBA 2
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 11
_pdbe_chem_comp_rdkit_properties.NumAtoms 21
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 2
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.222
_pdbe_chem_comp_rdkit_properties.NumRings 1
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 79.618
_pdbe_chem_comp_rdkit_properties.tpsa 37.300
_pdbe_chem_comp_rdkit_properties.CrippenClogP 1.331
_pdbe_chem_comp_rdkit_properties.CrippenMR 41.706
_pdbe_chem_comp_rdkit_properties.chi0v 5.316
_pdbe_chem_comp_rdkit_properties.chi1v 2.658
_pdbe_chem_comp_rdkit_properties.chi2v 1.005
_pdbe_chem_comp_rdkit_properties.chi3v 1.005
_pdbe_chem_comp_rdkit_properties.chi4v 0.508
_pdbe_chem_comp_rdkit_properties.chi0n 15.316
_pdbe_chem_comp_rdkit_properties.chi1n 7.566
_pdbe_chem_comp_rdkit_properties.chi2n 1.005
_pdbe_chem_comp_rdkit_properties.chi3n 1.005
_pdbe_chem_comp_rdkit_properties.chi4n 0.508
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.310
_pdbe_chem_comp_rdkit_properties.kappa1 1.887
_pdbe_chem_comp_rdkit_properties.kappa2 2.742
_pdbe_chem_comp_rdkit_properties.kappa3 1.580
_pdbe_chem_comp_rdkit_properties.Phi 0.470
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
YTP UniChem ChEMBL CHEMBL375739
YTP UniChem PDBe YTP
YTP UniChem ChEBI 166495
YTP UniChem ZINC ZINC000000164888
YTP UniChem MedChemExpress HY-W001663
YTP UniChem 'Probes And Drugs' PD166613
YTP UniChem eMolecules 539120
YTP UniChem fdasrs YHR7Q24SCD
YTP UniChem SureChEMBL SCHEMBL172723
YTP UniChem HMDB HMDB0059824
YTP UniChem 'PubChem TPHARMA' 46503470
YTP UniChem PubChem 70135
YTP UniChem Mcule MCULE-2948911825
YTP UniChem NMRShiftDB 20040431
YTP UniChem ACTor 876-02-8
YTP UniChem Nikkaji J113I
YTP UniChem 'EPA CompTox Dashboard' DTXSID60236500
YTP UniChem MetaboLights MTBLC166495
YTP UniChem BRENDA 22680
YTP UniChem ChemicalBook CB7468317
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
YTP C1 -1.838 0.727 -0.344 ETKDGv3 1
YTP C2 -0.976 1.929 -0.373 ETKDGv3 2
YTP C3 0.342 1.821 -0.177 ETKDGv3 3
YTP C4 0.964 0.494 0.072 ETKDGv3 4
YTP C5 0.173 -0.598 0.098 ETKDGv3 5
YTP C6 -1.292 -0.483 -0.119 ETKDGv3 6
YTP C7 2.434 0.404 0.287 ETKDGv3 7
YTP O8 3.131 1.455 0.254 ETKDGv3 8
YTP C9 3.127 -0.901 0.544 ETKDGv3 9
YTP C10 -2.150 -1.716 -0.086 ETKDGv3 10
YTP O11 -3.211 0.856 -0.550 ETKDGv3 11
YTP H2 -1.414 2.902 -0.554 ETKDGv3 12
YTP H3 0.952 2.715 -0.204 ETKDGv3 13
YTP H5 0.589 -1.580 0.277 ETKDGv3 14
YTP H9 2.726 -1.365 1.469 ETKDGv3 15
YTP H9A 4.219 -0.744 0.675 ETKDGv3 16
YTP H9B 2.973 -1.586 -0.316 ETKDGv3 17
YTP H10 -1.542 -2.624 0.111 ETKDGv3 18
YTP H10A -2.910 -1.624 0.719 ETKDGv3 19
YTP H10B -2.663 -1.844 -1.062 ETKDGv3 20
YTP HO11 -3.634 1.761 -0.720 ETKDGv3 21
#