data_YTT
#
_chem_comp.id YTT
_chem_comp.name (3S,6S)-3,6-bis(4-hydroxybenzyl)piperazine-2,5-dione
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C18 H18 N2 O4"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms "cyclo(tyrosyl-tyrosyl); Cyclo(tyr-tyr)"
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2009-03-12
_chem_comp.pdbx_modified_date 2021-03-13
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 326.347
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code YTT
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 3G5H
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBJ
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
YTT OB OB O 0 1 N N N N N N 9.251 21.528 -0.786 -0.199 -2.683 -1.424 OB YTT 1
YTT CB CB C 0 1 N N N N N N 8.935 20.344 -0.663 -0.112 -1.481 -1.288 CB YTT 2
YTT CAB CAB C 0 1 N N S N N N 9.819 19.259 -1.226 1.246 -0.877 -1.090 CAB YTT 3
YTT CBB CBB C 0 1 N N N N N N 9.854 19.277 -2.775 1.673 -1.070 0.366 CBB YTT 4
YTT CGB CGB C 0 1 Y N N N N N 11.018 18.396 -3.189 3.086 -0.576 0.545 CGB YTT 5
YTT CD3 CD3 C 0 1 Y N N N N N 12.293 18.945 -3.352 3.317 0.742 0.894 CD3 YTT 6
YTT CE3 CE3 C 0 1 Y N N N N N 13.403 18.132 -3.663 4.611 1.198 1.058 CE3 YTT 7
YTT CZB CZB C 0 1 Y N N N N N 13.201 16.738 -3.832 5.679 0.332 0.873 CZB YTT 8
YTT OHB OHB O 0 1 N N N N N N 14.261 15.937 -4.126 6.952 0.777 1.034 OHB YTT 9
YTT CE4 CE4 C 0 1 Y N N N N N 11.918 16.186 -3.704 5.444 -0.990 0.524 CE4 YTT 10
YTT CD4 CD4 C 0 1 Y N N N N N 10.828 17.018 -3.385 4.148 -1.442 0.366 CD4 YTT 11
YTT NB NB N 0 1 N N N N N N 9.473 17.923 -0.735 1.242 0.546 -1.401 NB YTT 12
YTT NA NA N 0 1 N N N N N N 7.826 19.992 -0.003 -1.230 -0.749 -1.325 NA YTT 13
YTT CAA CAA C 0 1 N N S N N N 7.307 18.645 0.177 -1.231 0.700 -1.171 CAA YTT 14
YTT CA CA C 0 1 N N N N N N 8.317 17.578 -0.149 0.124 1.278 -1.438 CA YTT 15
YTT OA OA O 0 1 N N N N N N 8.038 16.419 0.144 0.209 2.458 -1.704 OA YTT 16
YTT CBA CBA C 0 1 N N N N N N 6.006 18.436 -0.634 -1.652 1.051 0.258 CBA YTT 17
YTT CGA CGA C 0 1 Y N N N N N 6.229 18.546 -2.132 -3.079 0.620 0.481 CGA YTT 18
YTT CD2 CD2 C 0 1 Y N N N N N 6.531 17.408 -2.885 -3.350 -0.648 0.960 CD2 YTT 19
YTT CE2 CE2 C 0 1 Y N N N N N 6.740 17.532 -4.252 -4.657 -1.046 1.165 CE2 YTT 20
YTT CZA CZA C 0 1 Y N N N N N 6.630 18.770 -4.898 -5.698 -0.170 0.892 CZA YTT 21
YTT OHA OHA O 0 1 N N N N N N 6.853 18.876 -6.243 -6.984 -0.558 1.093 OHA YTT 22
YTT CE1 CE1 C 0 1 Y N N N N N 6.341 19.918 -4.149 -5.423 1.102 0.412 CE1 YTT 23
YTT CD1 CD1 C 0 1 Y N N N N N 6.140 19.782 -2.781 -4.114 1.497 0.213 CD1 YTT 24
YTT HAB HAB H 0 1 N N N N N N 10.830 19.488 -0.858 1.959 -1.382 -1.741 HAB YTT 25
YTT HBB HBB H 0 1 N N N N N N 8.911 18.887 -3.186 1.006 -0.506 1.018 HBB YTT 26
YTT HBBA HBBA H 0 0 N N N N N N 9.976 20.301 -3.157 1.623 -2.128 0.622 HBBA YTT 27
YTT HD3 HD3 H 0 1 N N N N N N 12.431 20.010 -3.238 2.485 1.416 1.037 HD3 YTT 28
YTT HE3 HE3 H 0 1 N N N N N N 14.388 18.562 -3.770 4.791 2.227 1.329 HE3 YTT 29
YTT HOHB HOHB H 0 0 N N N N N N 14.269 15.750 -5.057 7.290 0.686 1.936 HOHB YTT 30
YTT HE4 HE4 H 0 1 N N N N N N 11.767 15.127 -3.850 6.273 -1.667 0.379 HE4 YTT 31
YTT HD4 HD4 H 0 1 N N N N N N 9.839 16.594 -3.290 3.964 -2.472 0.098 HD4 YTT 32
YTT HNB HNB H 0 1 N N N N N N 10.160 17.205 -0.847 2.088 0.982 -1.590 HNB YTT 33
YTT HNA HNA H 0 1 N N N N N N 7.298 20.734 0.411 -2.076 -1.202 -1.461 HNA YTT 34
YTT HAA HAA H 0 1 N N N N N N 7.075 18.544 1.248 -1.947 1.132 -1.869 HAA YTT 35
YTT HBA HBA H 0 1 N N N N N N 5.616 17.432 -0.413 -1.002 0.536 0.965 HBA YTT 36
YTT HBAA HBAA H 0 0 N N N N N N 5.298 19.225 -0.341 -1.570 2.127 0.406 HBAA YTT 37
YTT HD2 HD2 H 0 1 N N N N N N 6.601 16.442 -2.408 -2.539 -1.329 1.173 HD2 YTT 38
YTT HE2 HE2 H 0 1 N N N N N N 6.993 16.655 -4.830 -4.868 -2.037 1.538 HE2 YTT 39
YTT HOHA HOHA H 0 0 N N N N N N 6.021 18.901 -6.701 -7.319 -0.366 1.980 HOHA YTT 40
YTT HE1 HE1 H 0 1 N N N N N N 6.276 20.886 -4.624 -6.232 1.786 0.198 HE1 YTT 41
YTT HD1 HD1 H 0 1 N N N N N N 5.907 20.661 -2.198 -3.899 2.489 -0.156 HD1 YTT 42
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
YTT OB CB DOUB N N 1
YTT CB CAB SING N N 2
YTT CB NA SING N N 3
YTT CAB CBB SING N N 4
YTT CAB NB SING N N 5
YTT CBB CGB SING N N 6
YTT CGB CD3 DOUB Y N 7
YTT CGB CD4 SING Y N 8
YTT CD3 CE3 SING Y N 9
YTT CE3 CZB DOUB Y N 10
YTT CZB OHB SING N N 11
YTT CZB CE4 SING Y N 12
YTT CE4 CD4 DOUB Y N 13
YTT NB CA SING N N 14
YTT NA CAA SING N N 15
YTT CAA CA SING N N 16
YTT CAA CBA SING N N 17
YTT CA OA DOUB N N 18
YTT CBA CGA SING N N 19
YTT CGA CD2 DOUB Y N 20
YTT CGA CD1 SING Y N 21
YTT CD2 CE2 SING Y N 22
YTT CE2 CZA DOUB Y N 23
YTT CZA OHA SING N N 24
YTT CZA CE1 SING Y N 25
YTT CE1 CD1 DOUB Y N 26
YTT CAB HAB SING N N 27
YTT CBB HBB SING N N 28
YTT CBB HBBA SING N N 29
YTT CD3 HD3 SING N N 30
YTT CE3 HE3 SING N N 31
YTT OHB HOHB SING N N 32
YTT CE4 HE4 SING N N 33
YTT CD4 HD4 SING N N 34
YTT NB HNB SING N N 35
YTT NA HNA SING N N 36
YTT CAA HAA SING N N 37
YTT CBA HBA SING N N 38
YTT CBA HBAA SING N N 39
YTT CD2 HD2 SING N N 40
YTT CE2 HE2 SING N N 41
YTT OHA HOHA SING N N 42
YTT CE1 HE1 SING N N 43
YTT CD1 HD1 SING N N 44
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
YTT SMILES ACDLabs 10.04 O=C1NC(C(=O)NC1Cc2ccc(O)cc2)Cc3ccc(O)cc3
YTT SMILES_CANONICAL CACTVS 3.341 Oc1ccc(C[C@@H]2NC(=O)[C@H](Cc3ccc(O)cc3)NC2=O)cc1
YTT SMILES CACTVS 3.341 Oc1ccc(C[CH]2NC(=O)[CH](Cc3ccc(O)cc3)NC2=O)cc1
YTT SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 c1cc(ccc1C[C@H]2C(=O)N[C@H](C(=O)N2)Cc3ccc(cc3)O)O
YTT SMILES "OpenEye OEToolkits" 1.5.0 c1cc(ccc1CC2C(=O)NC(C(=O)N2)Cc3ccc(cc3)O)O
YTT InChI InChI 1.03 InChI=1S/C18H18N2O4/c21-13-5-1-11(2-6-13)9-15-17(23)20-16(18(24)19-15)10-12-3-7-14(22)8-4-12/h1-8,15-16,21-22H,9-10H2,(H,19,24)(H,20,23)/t15-,16-/m0/s1
YTT InChIKey InChI 1.03 NGPCLOGFGKJCBP-HOTGVXAUSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
YTT "SYSTEMATIC NAME" ACDLabs 10.04 (3S,6S)-3,6-bis(4-hydroxybenzyl)piperazine-2,5-dione
YTT "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 (3S,6S)-3,6-bis[(4-hydroxyphenyl)methyl]piperazine-2,5-dione
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
YTT 'Create component' 2009-03-12 PDBJ
YTT 'Modify aromatic_flag' 2011-06-04 RCSB
YTT 'Modify descriptor' 2011-06-04 RCSB
YTT 'Modify synonyms' 2021-03-13 RCSB
#
loop_
_pdbx_chem_comp_synonyms.ordinal
_pdbx_chem_comp_synonyms.comp_id
_pdbx_chem_comp_synonyms.name
_pdbx_chem_comp_synonyms.provenance
_pdbx_chem_comp_synonyms.type
1 YTT cyclo(tyrosyl-tyrosyl) PDB ?
2 YTT Cyclo(tyr-tyr) PDB ?
#
_pdbe_chem_comp_drugbank_details.comp_id YTT
_pdbe_chem_comp_drugbank_details.drugbank_id DB08761
_pdbe_chem_comp_drugbank_details.type 'small molecule'
_pdbe_chem_comp_drugbank_details.name (3S,6S)-3,6-bis(4-hydroxybenzyl)piperazine-2,5-dione
_pdbe_chem_comp_drugbank_details.description ?
_pdbe_chem_comp_drugbank_details.cas_number ?
_pdbe_chem_comp_drugbank_details.mechanism_of_action ?
#
loop_
_pdbe_chem_comp_synonyms.comp_id
_pdbe_chem_comp_synonyms.name
_pdbe_chem_comp_synonyms.provenance
_pdbe_chem_comp_synonyms.type
YTT cyclo(tyrosyl-tyrosyl) wwPDB ?
YTT Cyclo(tyr-tyr) wwPDB ?
#
_pdbe_chem_comp_drugbank_classification.comp_id YTT
_pdbe_chem_comp_drugbank_classification.drugbank_id DB08761
_pdbe_chem_comp_drugbank_classification.parent 'Alpha amino acids and derivatives'
_pdbe_chem_comp_drugbank_classification.kingdom 'Organic compounds'
_pdbe_chem_comp_drugbank_classification.class 'Carboxylic acids and derivatives'
_pdbe_chem_comp_drugbank_classification.superclass 'Organic acids and derivatives'
_pdbe_chem_comp_drugbank_classification.description
'This compound belongs to the class of organic compounds known as alpha amino acids and derivatives. These are amino acids in which the amino group is attached to the carbon atom immediately adjacent to the carboxylate group (alpha carbon), or a derivative thereof.'
#
_pdbe_chem_comp_drugbank_targets.comp_id YTT
_pdbe_chem_comp_drugbank_targets.drugbank_id DB08761
_pdbe_chem_comp_drugbank_targets.name 'Mycocyclosin synthase'
_pdbe_chem_comp_drugbank_targets.organism 'Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)'
_pdbe_chem_comp_drugbank_targets.uniprot_id P9WPP7
_pdbe_chem_comp_drugbank_targets.pharmacologically_active unknown
_pdbe_chem_comp_drugbank_targets.ordinal 1
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
YTT OB O 4.299 1.500 1
YTT CB C 5.598 0.750 2
YTT CAB C 5.598 -0.750 3
YTT CBB C 4.299 -1.500 4
YTT CGB C 4.299 -3.000 5
YTT CD3 C 3.000 -3.750 6
YTT CE3 C 3.000 -5.250 7
YTT CZB C 4.299 -6.000 8
YTT OHB O 4.299 -7.500 9
YTT CE4 C 5.598 -5.250 10
YTT CD4 C 5.598 -3.750 11
YTT NB N 6.897 -1.500 12
YTT NA N 6.897 1.500 13
YTT CAA C 8.196 0.750 14
YTT CA C 8.196 -0.750 15
YTT OA O 9.495 -1.500 16
YTT CBA C 9.495 1.500 17
YTT CGA C 9.495 3.000 18
YTT CD2 C 10.794 3.750 19
YTT CE2 C 10.794 5.250 20
YTT CZA C 9.495 6.000 21
YTT OHA O 9.495 7.500 22
YTT CE1 C 8.196 5.250 23
YTT CD1 C 8.196 3.750 24
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
YTT OB CB DOUBLE NONE 1
YTT CB CAB SINGLE NONE 2
YTT CB NA SINGLE NONE 3
YTT CAB CBB SINGLE BEGINWEDGE 4
YTT CAB NB SINGLE NONE 5
YTT CBB CGB SINGLE NONE 6
YTT CGB CD3 DOUBLE NONE 7
YTT CGB CD4 SINGLE NONE 8
YTT CD3 CE3 SINGLE NONE 9
YTT CE3 CZB DOUBLE NONE 10
YTT CZB OHB SINGLE NONE 11
YTT CZB CE4 SINGLE NONE 12
YTT CE4 CD4 DOUBLE NONE 13
YTT NB CA SINGLE NONE 14
YTT NA CAA SINGLE NONE 15
YTT CAA CA SINGLE NONE 16
YTT CAA CBA SINGLE BEGINWEDGE 17
YTT CA OA DOUBLE NONE 18
YTT CBA CGA SINGLE NONE 19
YTT CGA CD2 DOUBLE NONE 20
YTT CGA CD1 SINGLE NONE 21
YTT CD2 CE2 SINGLE NONE 22
YTT CE2 CZA DOUBLE NONE 23
YTT CZA OHA SINGLE NONE 24
YTT CZA CE1 SINGLE NONE 25
YTT CE1 CD1 DOUBLE NONE 26
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
YTT MurckoScaffold S1 scaffold 'O=C1N[C@@H](Cc2ccccc2)C(=O)N[C@H]1Cc1ccccc1' InChI=1S/C18H18N2O2/c21-17-15(11-13-7-3-1-4-8-13)19-18(22)16(20-17)12-14-9-5-2-6-10-14/h1-10,15-16H,11-12H2,(H,19,22)(H,20,21)/t15-,16-/m0/s1 JUAPMRSLDANLAS-HOTGVXAUSA-N
YTT amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
YTT peptide F2 fragment NCC=O InChI=1S/C2H5NO/c3-1-2-4/h2H,1,3H2 LYIIBVSRGJSHAV-UHFFFAOYSA-N
YTT phenyl F3 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
YTT piperazine F4 fragment C1CNCCN1 InChI=1S/C4H10N2/c1-2-6-4-3-5-1/h5-6H,1-4H2 GLUUGHFHXGJENI-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
YTT OB S1 1
YTT CB S1 1
YTT CAB S1 1
YTT CBB S1 1
YTT CGB S1 1
YTT CD3 S1 1
YTT CE3 S1 1
YTT CZB S1 1
YTT CE4 S1 1
YTT CD4 S1 1
YTT NB S1 1
YTT NA S1 1
YTT CAA S1 1
YTT CA S1 1
YTT OA S1 1
YTT CBA S1 1
YTT CGA S1 1
YTT CD2 S1 1
YTT CE2 S1 1
YTT CZA S1 1
YTT CE1 S1 1
YTT CD1 S1 1
YTT NB F1 1
YTT CA F1 1
YTT OA F1 1
YTT CAA F1 1
YTT NA F1 2
YTT CB F1 2
YTT OB F1 2
YTT CAB F1 2
YTT OB F2 1
YTT CB F2 1
YTT CAB F2 1
YTT NB F2 1
YTT OA F2 2
YTT CA F2 2
YTT CAA F2 2
YTT NA F2 2
YTT CGB F3 1
YTT CD3 F3 1
YTT CE3 F3 1
YTT CZB F3 1
YTT CE4 F3 1
YTT CD4 F3 1
YTT CGA F3 2
YTT CD2 F3 2
YTT CE2 F3 2
YTT CZA F3 2
YTT CE1 F3 2
YTT CD1 F3 2
YTT NB F4 1
YTT CAB F4 1
YTT CB F4 1
YTT NA F4 1
YTT CAA F4 1
YTT CA F4 1
#
_pdbe_chem_comp_rdkit_properties.comp_id YTT
_pdbe_chem_comp_rdkit_properties.exactmw 326.127
_pdbe_chem_comp_rdkit_properties.amw 326.352
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 6
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 4
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 6
_pdbe_chem_comp_rdkit_properties.NumHBD 4
_pdbe_chem_comp_rdkit_properties.NumHBA 4
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 24
_pdbe_chem_comp_rdkit_properties.NumAtoms 42
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 6
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 2
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.222
_pdbe_chem_comp_rdkit_properties.NumRings 3
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 2
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 164.262
_pdbe_chem_comp_rdkit_properties.tpsa 98.660
_pdbe_chem_comp_rdkit_properties.CrippenClogP -0.168
_pdbe_chem_comp_rdkit_properties.CrippenMR 85.731
_pdbe_chem_comp_rdkit_properties.chi0v 11.527
_pdbe_chem_comp_rdkit_properties.chi1v 6.211
_pdbe_chem_comp_rdkit_properties.chi2v 2.523
_pdbe_chem_comp_rdkit_properties.chi3v 2.523
_pdbe_chem_comp_rdkit_properties.chi4v 1.531
_pdbe_chem_comp_rdkit_properties.chi0n 29.527
_pdbe_chem_comp_rdkit_properties.chi1n 14.922
_pdbe_chem_comp_rdkit_properties.chi2n 2.523
_pdbe_chem_comp_rdkit_properties.chi3n 2.523
_pdbe_chem_comp_rdkit_properties.chi4n 1.531
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -3.020
_pdbe_chem_comp_rdkit_properties.kappa1 4.987
_pdbe_chem_comp_rdkit_properties.kappa2 6.617
_pdbe_chem_comp_rdkit_properties.kappa3 3.654
_pdbe_chem_comp_rdkit_properties.Phi 1.375
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
YTT UniChem ChEMBL CHEMBL189558
YTT UniChem DrugBank DB08761
YTT UniChem PDBe YTT
YTT UniChem ChEBI 65063
YTT UniChem NMRShiftDB 60027576
YTT UniChem BRENDA 28799
YTT UniChem Rhea 65063
YTT UniChem SureChEMBL SCHEMBL13399579
YTT UniChem 'PubChem TPHARMA' 16353436
YTT UniChem PubChem 11267350
YTT UniChem Nikkaji J2.653.044J
YTT UniChem BindingDb 50505734
YTT UniChem MetaboLights MTBLC65063
YTT UniChem 'Probes And Drugs' PD004555
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
YTT OB -0.407 2.788 -1.363 ETKDGv3 1
YTT CB -0.242 2.034 -0.367 ETKDGv3 2
YTT CAB 1.149 1.604 0.013 ETKDGv3 3
YTT CBB 1.650 0.501 -0.935 ETKDGv3 4
YTT CGB 3.082 0.133 -0.647 ETKDGv3 5
YTT CD3 3.379 -0.925 0.130 ETKDGv3 6
YTT CE3 4.788 -1.254 0.433 ETKDGv3 7
YTT CZB 5.779 -0.493 -0.057 ETKDGv3 8
YTT OHB 7.112 -0.789 0.221 ETKDGv3 9
YTT CE4 5.456 0.677 -0.900 ETKDGv3 10
YTT CD4 4.181 0.976 -1.179 ETKDGv3 11
YTT NB 1.197 1.154 1.407 ETKDGv3 12
YTT NA -1.382 1.590 0.377 ETKDGv3 13
YTT CAA -1.299 0.604 1.457 ETKDGv3 14
YTT CA 0.063 0.617 2.096 ETKDGv3 15
YTT OA 0.210 0.137 3.252 ETKDGv3 16
YTT CBA -1.638 -0.805 0.940 ETKDGv3 17
YTT CGA -3.032 -0.867 0.373 ETKDGv3 18
YTT CD2 -4.096 -1.019 1.181 ETKDGv3 19
YTT CE2 -5.462 -1.045 0.618 ETKDGv3 20
YTT CZA -5.650 -0.905 -0.704 ETKDGv3 21
YTT OHA -6.931 -0.926 -1.251 ETKDGv3 22
YTT CE1 -4.484 -0.724 -1.595 ETKDGv3 23
YTT CD1 -3.245 -0.705 -1.087 ETKDGv3 24
YTT HAB 1.815 2.490 -0.088 ETKDGv3 25
YTT HBB 1.582 0.860 -1.986 ETKDGv3 26
YTT HBBA 1.000 -0.395 -0.862 ETKDGv3 27
YTT HD3 2.594 -1.543 0.547 ETKDGv3 28
YTT HE3 5.010 -2.113 1.054 ETKDGv3 29
YTT HOHB 7.374 -1.582 0.795 ETKDGv3 30
YTT HE4 6.254 1.296 -1.291 ETKDGv3 31
YTT HD4 3.954 1.838 -1.794 ETKDGv3 32
YTT HNB 2.122 1.150 1.894 ETKDGv3 33
YTT HNA -2.328 1.922 0.081 ETKDGv3 34
YTT HAA -2.041 0.883 2.239 ETKDGv3 35
YTT HBA -1.548 -1.539 1.772 ETKDGv3 36
YTT HBAA -0.908 -1.113 0.163 ETKDGv3 37
YTT HD2 -3.966 -1.120 2.252 ETKDGv3 38
YTT HE2 -6.307 -1.176 1.281 ETKDGv3 39
YTT HOHA -7.756 -1.047 -0.674 ETKDGv3 40
YTT HE1 -4.633 -0.604 -2.660 ETKDGv3 41
YTT HD1 -2.398 -0.564 -1.747 ETKDGv3 42
#