data_YVN
#
_chem_comp.id YVN
_chem_comp.name N-({(1R,2R,3S)-2-(methylcarbamoyl)-3-[4-(phosphonooxy)phenyl]cyclopropyl}carbonyl)-L-valyl-L-aspartamide
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C21 H30 N5 O9 P"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2006-08-01
_chem_comp.pdbx_modified_date 2011-06-04
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 527.465
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code YVN
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 2HUW
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
YVN OBH OBH O 0 1 N N N N N N 22.387 81.731 22.758 7.426 1.758 -1.189 OBH YVN 1
YVN PBF PBF P 0 1 N N N N N N 22.449 82.515 24.159 7.242 2.106 0.237 PBF YVN 2
YVN OBI OBI O 0 1 N N N N N N 22.401 84.075 23.784 8.668 2.470 0.889 OBI YVN 3
YVN OBG OBG O 0 1 N N N N N N 23.656 82.154 24.943 6.258 3.374 0.357 OBG YVN 4
YVN OBE OBE O 0 1 N N N N N N 21.060 82.159 24.908 6.599 0.852 1.017 OBE YVN 5
YVN CBD CBD C 0 1 Y N N N N N 20.691 83.087 25.847 5.440 0.398 0.473 CBD YVN 6
YVN CBC CBC C 0 1 Y N N N N N 21.374 83.189 27.082 4.225 0.923 0.888 CBC YVN 7
YVN CBB CBB C 0 1 Y N N N N N 20.870 84.029 28.101 3.047 0.459 0.334 CBB YVN 8
YVN CBJ CBJ C 0 1 Y N N N N N 19.520 83.834 25.637 5.470 -0.587 -0.503 CBJ YVN 9
YVN CBK CBK C 0 1 Y N N N N N 19.018 84.674 26.650 4.290 -1.047 -1.055 CBK YVN 10
YVN CBA CBA C 0 1 Y N N N N N 19.684 84.772 27.888 3.079 -0.527 -0.635 CBA YVN 11
YVN CAZ CAZ C 0 1 N N S N N N 19.062 85.611 29.038 1.794 -1.031 -1.237 CAZ YVN 12
YVN CAF CAF C 0 1 N N R N N N 19.777 86.917 29.471 1.249 -2.366 -0.726 CAF YVN 13
YVN CAC CAC C 0 1 N N N N N N 21.080 87.312 28.760 2.039 -3.076 0.343 CAC YVN 14
YVN OAD OAD O 0 1 N N N N N N 21.113 87.503 27.546 2.976 -2.520 0.875 OAD YVN 15
YVN NAB NAB N 0 1 N N N N N N 22.128 87.466 29.569 1.705 -4.330 0.707 NAB YVN 16
YVN CAA CAA C 0 1 N N N N N N 22.752 88.631 29.634 2.473 -5.020 1.746 CAA YVN 17
YVN CAG CAG C 0 1 N N R N N N 18.514 86.994 28.628 0.555 -1.058 -0.340 CAG YVN 18
YVN CAH CAH C 0 1 N N N N N N 17.274 87.492 29.375 -0.776 -0.761 -0.981 CAH YVN 19
YVN OAI OAI O 0 1 N N N N N N 17.120 87.270 30.576 -0.836 -0.512 -2.166 OAI YVN 20
YVN NAJ NAJ N 0 1 N N N N N N 16.404 88.162 28.615 -1.900 -0.771 -0.237 NAJ YVN 21
YVN CAK CAK C 0 1 N N S N N N 15.147 88.761 29.125 -3.194 -0.482 -0.860 CAK YVN 22
YVN CAW CAW C 0 1 N N N N N N 14.324 89.308 27.937 -3.762 -1.764 -1.472 CAW YVN 23
YVN CAX CAX C 0 1 N N N N N N 13.027 89.978 28.413 -2.873 -2.213 -2.633 CAX YVN 24
YVN CAY CAY C 0 1 N N N N N N 15.151 90.311 27.127 -3.805 -2.862 -0.408 CAY YVN 25
YVN CAL CAL C 0 1 N N N N N N 14.308 87.758 29.952 -4.147 0.043 0.182 CAL YVN 26
YVN OAM OAM O 0 1 N N N N N N 13.775 88.116 31.000 -3.846 -0.000 1.356 OAM YVN 27
YVN NAN NAN N 0 1 N N N N N N 14.208 86.521 29.457 -5.334 0.561 -0.190 NAN YVN 28
YVN CAO CAO C 0 1 N N S N N N 13.419 85.485 30.155 -6.218 1.161 0.812 CAO YVN 29
YVN CAT CAT C 0 1 N N N N N N 14.336 84.491 30.889 -7.053 0.084 1.455 CAT YVN 30
YVN OAV OAV O 0 1 N N N N N N 13.903 83.409 31.288 -6.923 -1.071 1.110 OAV YVN 31
YVN NAU NAU N 0 1 N N N N N N 15.593 84.890 31.048 -7.945 0.405 2.413 NAU YVN 32
YVN CAP CAP C 0 1 N N N N N N 12.503 84.751 29.154 -7.136 2.182 0.136 CAP YVN 33
YVN CAQ CAQ C 0 1 N N N N N N 13.286 84.026 28.044 -6.309 3.323 -0.401 CAQ YVN 34
YVN OAS OAS O 0 1 N N N N N N 14.447 84.334 27.774 -5.105 3.319 -0.257 OAS YVN 35
YVN NAR NAR N 0 1 N N N N N N 12.613 83.059 27.428 -6.908 4.346 -1.041 NAR YVN 36
YVN HOBI HOBI H 0 0 N N N N N N 22.392 84.592 24.581 9.114 3.217 0.468 HOBI YVN 37
YVN HOBG HOBG H 0 0 N N N N N N 24.402 82.077 24.360 6.091 3.658 1.267 HOBG YVN 38
YVN HBC HBC H 0 1 N N N N N N 22.280 82.625 27.246 4.199 1.693 1.645 HBC YVN 39
YVN HBB HBB H 0 1 N N N N N N 21.391 84.104 29.044 2.101 0.868 0.657 HBB YVN 40
YVN HBJ HBJ H 0 1 N N N N N N 19.001 83.764 24.692 6.415 -0.994 -0.832 HBJ YVN 41
YVN HBK HBK H 0 1 N N N N N N 18.118 85.246 26.477 4.312 -1.814 -1.815 HBK YVN 42
YVN HAZ HAZ H 0 1 N N N N N N 18.688 84.726 29.574 1.646 -0.798 -2.292 HAZ YVN 43
YVN HAF HAF H 0 1 N N N N N N 20.109 87.317 30.441 0.743 -3.011 -1.443 HAF YVN 44
YVN HNAB HNAB H 0 0 N N N N N N 22.443 86.699 30.128 0.955 -4.775 0.282 HNAB YVN 45
YVN HAA1 HAA1 H 0 0 N N N N N N 22.925 88.897 30.687 2.420 -4.453 2.675 HAA1 YVN 46
YVN HAA2 HAA2 H 0 0 N N N N N N 23.717 88.560 29.111 2.058 -6.016 1.904 HAA2 YVN 47
YVN HAA3 HAA3 H 0 0 N N N N N N 22.133 89.405 29.158 3.513 -5.106 1.432 HAA3 YVN 48
YVN HAG HAG H 0 1 N N N N N N 18.238 87.451 27.666 0.670 -0.711 0.687 HAG YVN 49
YVN HNAJ HNAJ H 0 0 N N N N N N 16.613 88.266 27.643 -1.852 -0.970 0.712 HNAJ YVN 50
YVN HAK HAK H 0 1 N N N N N N 15.414 89.583 29.806 -3.061 0.266 -1.641 HAK YVN 51
YVN HAW HAW H 0 1 N N N N N N 14.060 88.452 27.299 -4.771 -1.574 -1.839 HAW YVN 52
YVN HAX1 HAX1 H 0 0 N N N N N N 13.074 90.138 29.500 -1.891 -2.494 -2.252 HAX1 YVN 53
YVN HAX2 HAX2 H 0 0 N N N N N N 12.907 90.946 27.905 -3.329 -3.070 -3.129 HAX2 YVN 54
YVN HAX3 HAX3 H 0 0 N N N N N N 12.171 89.330 28.175 -2.766 -1.395 -3.346 HAX3 YVN 55
YVN HAY1 HAY1 H 0 0 N N N N N N 15.349 91.203 27.740 -4.438 -2.542 0.420 HAY1 YVN 56
YVN HAY2 HAY2 H 0 0 N N N N N N 16.105 89.848 26.834 -4.210 -3.775 -0.844 HAY2 YVN 57
YVN HAY3 HAY3 H 0 0 N N N N N N 14.593 90.603 26.225 -2.796 -3.051 -0.041 HAY3 YVN 58
YVN HNAN HNAN H 0 0 N N N N N N 14.674 86.293 28.602 -5.603 0.536 -1.122 HNAN YVN 59
YVN HAO HAO H 0 1 N N N N N N 12.790 85.978 30.911 -5.619 1.660 1.573 HAO YVN 60
YVN HAU1 HAU1 H 0 0 N N N N N N 16.078 84.162 31.533 -8.050 1.329 2.688 HAU1 YVN 61
YVN HAU2 HAU2 H 0 0 N N N N N N 15.983 85.758 30.739 -8.483 -0.288 2.827 HAU2 YVN 62
YVN HAP1 HAP1 H 0 0 N N N N N N 11.915 84.004 29.707 -7.670 1.704 -0.685 HAP1 YVN 63
YVN HAP2 HAP2 H 0 0 N N N N N N 11.867 85.507 28.671 -7.852 2.564 0.863 HAP2 YVN 64
YVN HAR1 HAR1 H 0 0 N N N N N N 13.221 82.669 26.737 -7.871 4.350 -1.156 HAR1 YVN 65
YVN HAR2 HAR2 H 0 0 N N N N N N 11.674 82.775 27.620 -6.376 5.080 -1.386 HAR2 YVN 66
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
YVN OBH PBF DOUB N N 1
YVN PBF OBI SING N N 2
YVN PBF OBE SING N N 3
YVN PBF OBG SING N N 4
YVN OBI HOBI SING N N 5
YVN OBG HOBG SING N N 6
YVN OBE CBD SING N N 7
YVN CBD CBJ DOUB Y N 8
YVN CBD CBC SING Y N 9
YVN CBC CBB DOUB Y N 10
YVN CBC HBC SING N N 11
YVN CBB CBA SING Y N 12
YVN CBB HBB SING N N 13
YVN CBJ CBK SING Y N 14
YVN CBJ HBJ SING N N 15
YVN CBK CBA DOUB Y N 16
YVN CBK HBK SING N N 17
YVN CBA CAZ SING N N 18
YVN CAZ CAG SING N N 19
YVN CAZ CAF SING N N 20
YVN CAZ HAZ SING N N 21
YVN CAF CAG SING N N 22
YVN CAF CAC SING N N 23
YVN CAF HAF SING N N 24
YVN CAC OAD DOUB N N 25
YVN CAC NAB SING N N 26
YVN NAB CAA SING N N 27
YVN NAB HNAB SING N N 28
YVN CAA HAA1 SING N N 29
YVN CAA HAA2 SING N N 30
YVN CAA HAA3 SING N N 31
YVN CAG CAH SING N N 32
YVN CAG HAG SING N N 33
YVN CAH NAJ SING N N 34
YVN CAH OAI DOUB N N 35
YVN NAJ CAK SING N N 36
YVN NAJ HNAJ SING N N 37
YVN CAK CAW SING N N 38
YVN CAK CAL SING N N 39
YVN CAK HAK SING N N 40
YVN CAW CAY SING N N 41
YVN CAW CAX SING N N 42
YVN CAW HAW SING N N 43
YVN CAX HAX1 SING N N 44
YVN CAX HAX2 SING N N 45
YVN CAX HAX3 SING N N 46
YVN CAY HAY1 SING N N 47
YVN CAY HAY2 SING N N 48
YVN CAY HAY3 SING N N 49
YVN CAL NAN SING N N 50
YVN CAL OAM DOUB N N 51
YVN NAN CAO SING N N 52
YVN NAN HNAN SING N N 53
YVN CAO CAP SING N N 54
YVN CAO CAT SING N N 55
YVN CAO HAO SING N N 56
YVN CAT NAU SING N N 57
YVN CAT OAV DOUB N N 58
YVN NAU HAU1 SING N N 59
YVN NAU HAU2 SING N N 60
YVN CAP CAQ SING N N 61
YVN CAP HAP1 SING N N 62
YVN CAP HAP2 SING N N 63
YVN CAQ NAR SING N N 64
YVN CAQ OAS DOUB N N 65
YVN NAR HAR1 SING N N 66
YVN NAR HAR2 SING N N 67
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
YVN SMILES ACDLabs 10.04 O=C(N)CC(C(=O)N)NC(=O)C(NC(=O)C2C(C(=O)NC)C2c1ccc(OP(=O)(O)O)cc1)C(C)C
YVN SMILES_CANONICAL CACTVS 3.341 CNC(=O)[C@H]1[C@@H]([C@H]1c2ccc(O[P](O)(O)=O)cc2)C(=O)N[C@@H](C(C)C)C(=O)N[C@@H](CC(N)=O)C(N)=O
YVN SMILES CACTVS 3.341 CNC(=O)[CH]1[CH]([CH]1c2ccc(O[P](O)(O)=O)cc2)C(=O)N[CH](C(C)C)C(=O)N[CH](CC(N)=O)C(N)=O
YVN SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 CC(C)[C@@H](C(=O)N[C@@H](CC(=O)N)C(=O)N)NC(=O)[C@@H]1[C@H]([C@H]1C(=O)NC)c2ccc(cc2)OP(=O)(O)O
YVN SMILES "OpenEye OEToolkits" 1.5.0 CC(C)C(C(=O)NC(CC(=O)N)C(=O)N)NC(=O)C1C(C1C(=O)NC)c2ccc(cc2)OP(=O)(O)O
YVN InChI InChI 1.03 InChI=1S/C21H30N5O9P/c1-9(2)17(21(31)25-12(18(23)28)8-13(22)27)26-20(30)16-14(15(16)19(29)24-3)10-4-6-11(7-5-10)35-36(32,33)34/h4-7,9,12,14-17H,8H2,1-3H3,(H2,22,27)(H2,23,28)(H,24,29)(H,25,31)(H,26,30)(H2,32,33,34)/t12-,14-,15+,16+,17-/m0/s1
YVN InChIKey InChI 1.03 LVYNAUCEOQBVSW-RDDKANTKSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
YVN "SYSTEMATIC NAME" ACDLabs 10.04 N-({(1R,2R,3S)-2-(methylcarbamoyl)-3-[4-(phosphonooxy)phenyl]cyclopropyl}carbonyl)-L-valyl-L-aspartamide
YVN "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[4-[(1S,2R,3R)-2-[[(2S)-1-[[(2S)-1,4-diamino-1,4-dioxo-butan-2-yl]amino]-3-methyl-1-oxo-butan-2-yl]carbamoyl]-3-(methylcarbamoyl)cyclopropyl]phenyl] dihydrogen phosphate"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
YVN 'Create component' 2006-08-01 RCSB
YVN 'Modify descriptor' 2011-06-04 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
YVN OBH O 13.649 -9.274 1
YVN PBF P 12.350 -8.524 2
YVN OBI O 11.600 -9.823 3
YVN OBG O 13.100 -7.226 4
YVN OBE O 11.051 -7.774 5
YVN CBD C 11.051 -6.274 6
YVN CBC C 12.350 -5.524 7
YVN CBB C 12.350 -4.024 8
YVN CBJ C 9.752 -5.524 9
YVN CBK C 9.752 -4.024 10
YVN CBA C 11.051 -3.275 11
YVN CAZ C 11.051 -1.774 12
YVN CAF C 11.801 -0.475 13
YVN CAC C 13.100 0.275 14
YVN OAD O 14.399 -0.475 15
YVN NAB N 13.100 1.774 16
YVN CAA C 14.399 2.525 17
YVN CAG C 10.301 -0.475 18
YVN CAH C 9.002 0.275 19
YVN OAI O 7.702 -0.475 20
YVN NAJ N 9.002 1.774 21
YVN CAK C 7.702 2.525 22
YVN CAW C 6.404 1.774 23
YVN CAX C 6.404 0.275 24
YVN CAY C 5.104 2.525 25
YVN CAL C 7.702 4.024 26
YVN OAM O 9.002 4.774 27
YVN NAN N 6.404 4.774 28
YVN CAO C 6.404 6.274 29
YVN CAT C 5.104 7.024 30
YVN OAV O 3.805 6.274 31
YVN NAU N 5.104 8.524 32
YVN CAP C 7.702 7.024 33
YVN CAQ C 7.702 8.524 34
YVN OAS O 9.002 9.274 35
YVN NAR N 6.404 9.274 36
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
YVN OBH PBF DOUBLE NONE 1
YVN PBF OBI SINGLE NONE 2
YVN PBF OBE SINGLE NONE 3
YVN PBF OBG SINGLE NONE 4
YVN OBE CBD SINGLE NONE 5
YVN CBD CBJ DOUBLE NONE 6
YVN CBD CBC SINGLE NONE 7
YVN CBC CBB DOUBLE NONE 8
YVN CBB CBA SINGLE NONE 9
YVN CBJ CBK SINGLE NONE 10
YVN CBK CBA DOUBLE NONE 11
YVN CAZ CBA SINGLE BEGINDASH 12
YVN CAZ CAG SINGLE NONE 13
YVN CAZ CAF SINGLE NONE 14
YVN CAF CAG SINGLE NONE 15
YVN CAF CAC SINGLE BEGINDASH 16
YVN CAC OAD DOUBLE NONE 17
YVN CAC NAB SINGLE NONE 18
YVN NAB CAA SINGLE NONE 19
YVN CAG CAH SINGLE BEGINWEDGE 20
YVN CAH NAJ SINGLE NONE 21
YVN CAH OAI DOUBLE NONE 22
YVN CAK NAJ SINGLE BEGINWEDGE 23
YVN CAK CAW SINGLE NONE 24
YVN CAK CAL SINGLE NONE 25
YVN CAW CAY SINGLE NONE 26
YVN CAW CAX SINGLE NONE 27
YVN CAL NAN SINGLE NONE 28
YVN CAL OAM DOUBLE NONE 29
YVN NAN CAO SINGLE NONE 30
YVN CAO CAP SINGLE BEGINDASH 31
YVN CAO CAT SINGLE NONE 32
YVN CAT NAU SINGLE NONE 33
YVN CAT OAV DOUBLE NONE 34
YVN CAP CAQ SINGLE NONE 35
YVN CAQ NAR SINGLE NONE 36
YVN CAQ OAS DOUBLE NONE 37
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
YVN MurckoScaffold S1 scaffold c1ccc(C2CC2)cc1 InChI=1S/C9H10/c1-2-4-8(5-3-1)9-6-7-9/h1-5,9H,6-7H2 VFSFCYAQBIPUSL-UHFFFAOYSA-N
YVN amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
YVN cyclopropane F2 fragment C1CC1 InChI=1S/C3H6/c1-2-3-1/h1-3H2 LVZWSLJZHVFIQJ-UHFFFAOYSA-N
YVN peptide F3 fragment NCC=O InChI=1S/C2H5NO/c3-1-2-4/h2H,1,3H2 LYIIBVSRGJSHAV-UHFFFAOYSA-N
YVN phenyl F4 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
YVN phosphate F5 fragment O=P(O)(O)O InChI=1S/H3O4P/c1-5(2,3)4/h(H3,1,2,3,4) NBIIXXVUZAFLBC-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
YVN CBD S1 1
YVN CBC S1 1
YVN CBB S1 1
YVN CBJ S1 1
YVN CBK S1 1
YVN CBA S1 1
YVN CAZ S1 1
YVN CAF S1 1
YVN CAG S1 1
YVN NAB F1 1
YVN CAC F1 1
YVN OAD F1 1
YVN CAF F1 1
YVN NAJ F1 2
YVN CAH F1 2
YVN OAI F1 2
YVN CAG F1 2
YVN NAN F1 3
YVN CAL F1 3
YVN OAM F1 3
YVN CAK F1 3
YVN NAU F1 4
YVN CAT F1 4
YVN OAV F1 4
YVN CAO F1 4
YVN NAR F1 5
YVN CAQ F1 5
YVN OAS F1 5
YVN CAP F1 5
YVN CAZ F2 1
YVN CAG F2 1
YVN CAF F2 1
YVN OAM F3 1
YVN CAL F3 1
YVN CAK F3 1
YVN NAJ F3 1
YVN OAV F3 2
YVN CAT F3 2
YVN CAO F3 2
YVN NAN F3 2
YVN CBD F4 1
YVN CBJ F4 1
YVN CBK F4 1
YVN CBA F4 1
YVN CBB F4 1
YVN CBC F4 1
YVN OBI F5 1
YVN PBF F5 1
YVN OBH F5 1
YVN OBE F5 1
YVN OBG F5 1
#
_pdbe_chem_comp_rdkit_properties.comp_id YVN
_pdbe_chem_comp_rdkit_properties.exactmw 527.178
_pdbe_chem_comp_rdkit_properties.amw 527.471
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 14
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 9
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 17
_pdbe_chem_comp_rdkit_properties.NumHBD 7
_pdbe_chem_comp_rdkit_properties.NumHBA 9
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 36
_pdbe_chem_comp_rdkit_properties.NumAtoms 66
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 15
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 5
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.476
_pdbe_chem_comp_rdkit_properties.NumRings 2
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 5
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 249.017
_pdbe_chem_comp_rdkit_properties.tpsa 240.240
_pdbe_chem_comp_rdkit_properties.CrippenClogP -2.297
_pdbe_chem_comp_rdkit_properties.CrippenMR 123.731
_pdbe_chem_comp_rdkit_properties.chi0v 17.752
_pdbe_chem_comp_rdkit_properties.chi1v 9.954
_pdbe_chem_comp_rdkit_properties.chi2v 3.972
_pdbe_chem_comp_rdkit_properties.chi3v 3.972
_pdbe_chem_comp_rdkit_properties.chi4v 2.573
_pdbe_chem_comp_rdkit_properties.chi0n 46.858
_pdbe_chem_comp_rdkit_properties.chi1n 22.941
_pdbe_chem_comp_rdkit_properties.chi2n 3.566
_pdbe_chem_comp_rdkit_properties.chi3n 3.566
_pdbe_chem_comp_rdkit_properties.chi4n 2.258
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -3.480
_pdbe_chem_comp_rdkit_properties.kappa1 8.008
_pdbe_chem_comp_rdkit_properties.kappa2 11.503
_pdbe_chem_comp_rdkit_properties.kappa3 7.507
_pdbe_chem_comp_rdkit_properties.Phi 2.559
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
YVN UniChem PDBe YVN
YVN UniChem ZINC ZINC000016052137
YVN UniChem 'PubChem TPHARMA' 15481414
YVN UniChem PubChem 9547990
YVN UniChem Nikkaji J1.872.386G
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
YVN OBH 7.841 -3.247 0.278 ETKDGv3 1
YVN PBF 8.359 -2.040 1.027 ETKDGv3 2
YVN OBI 10.044 -1.972 0.883 ETKDGv3 3
YVN OBG 7.944 -2.160 2.663 ETKDGv3 4
YVN OBE 7.677 -0.607 0.361 ETKDGv3 5
YVN CBD 6.303 -0.330 0.320 ETKDGv3 6
YVN CBC 5.277 -1.259 0.869 ETKDGv3 7
YVN CBB 3.977 -0.952 0.790 ETKDGv3 8
YVN CBJ 5.904 0.823 -0.234 ETKDGv3 9
YVN CBK 4.470 1.166 -0.311 ETKDGv3 10
YVN CBA 3.540 0.306 0.135 ETKDGv3 11
YVN CAZ 2.079 0.685 0.084 ETKDGv3 12
YVN CAF 1.383 0.673 -1.293 ETKDGv3 13
YVN CAC 2.222 0.290 -2.484 ETKDGv3 14
YVN OAD 2.227 -0.900 -2.905 ETKDGv3 15
YVN NAB 2.975 1.296 -3.169 ETKDGv3 16
YVN CAA 3.886 0.966 -4.258 ETKDGv3 17
YVN CAG 1.121 -0.450 -0.288 ETKDGv3 18
YVN CAH -0.227 -0.444 0.393 ETKDGv3 19
YVN OAI -0.726 -1.557 0.709 ETKDGv3 20
YVN NAJ -0.954 0.767 0.685 ETKDGv3 21
YVN CAK -2.302 0.734 1.269 ETKDGv3 22
YVN CAW -2.747 2.152 1.734 ETKDGv3 23
YVN CAX -3.952 2.080 2.683 ETKDGv3 24
YVN CAY -3.048 3.109 0.568 ETKDGv3 25
YVN CAL -3.277 0.116 0.294 ETKDGv3 26
YVN OAM -3.157 0.350 -0.940 ETKDGv3 27
YVN NAN -4.339 -0.725 0.774 ETKDGv3 28
YVN CAO -5.266 -1.458 -0.097 ETKDGv3 29
YVN CAT -4.501 -2.393 -1.001 ETKDGv3 30
YVN OAV -4.354 -2.130 -2.226 ETKDGv3 31
YVN NAU -3.894 -3.565 -0.459 ETKDGv3 32
YVN CAP -6.194 -0.500 -0.874 ETKDGv3 33
YVN CAQ -6.987 0.372 0.054 ETKDGv3 34
YVN OAS -6.693 1.591 0.173 ETKDGv3 35
YVN NAR -8.066 -0.173 0.814 ETKDGv3 36
YVN HOBI 10.209 -1.811 -0.080 ETKDGv3 37
YVN HOBG 8.408 -2.974 2.982 ETKDGv3 38
YVN HBC 5.563 -2.184 1.349 ETKDGv3 39
YVN HBB 3.245 -1.627 1.215 ETKDGv3 40
YVN HBJ 6.635 1.517 -0.632 ETKDGv3 41
YVN HBK 4.181 2.119 -0.735 ETKDGv3 42
YVN HAZ 1.711 1.435 0.814 ETKDGv3 43
YVN HAF 0.580 1.423 -1.440 ETKDGv3 44
YVN HNAB 2.888 2.293 -2.869 ETKDGv3 45
YVN HAA1 3.322 0.497 -5.092 ETKDGv3 46
YVN HAA2 4.378 1.889 -4.631 ETKDGv3 47
YVN HAA3 4.666 0.264 -3.895 ETKDGv3 48
YVN HAG 1.580 -1.435 -0.524 ETKDGv3 49
YVN HNAJ -0.502 1.692 0.521 ETKDGv3 50
YVN HAK -2.251 0.087 2.173 ETKDGv3 51
YVN HAW -1.908 2.592 2.319 ETKDGv3 52
YVN HAX1 -4.845 1.679 2.161 ETKDGv3 53
YVN HAX2 -3.721 1.428 3.552 ETKDGv3 54
YVN HAX3 -4.194 3.093 3.070 ETKDGv3 55
YVN HAY1 -3.220 4.135 0.957 ETKDGv3 56
YVN HAY2 -2.195 3.153 -0.141 ETKDGv3 57
YVN HAY3 -3.957 2.791 0.015 ETKDGv3 58
YVN HNAN -4.428 -0.871 1.805 ETKDGv3 59
YVN HAO -5.915 -2.095 0.545 ETKDGv3 60
YVN HAU1 -3.348 -4.209 -1.074 ETKDGv3 61
YVN HAU2 -3.980 -3.787 0.557 ETKDGv3 62
YVN HAP1 -6.903 -1.096 -1.489 ETKDGv3 63
YVN HAP2 -5.609 0.136 -1.572 ETKDGv3 64
YVN HAR1 -8.608 0.433 1.468 ETKDGv3 65
YVN HAR2 -8.326 -1.180 0.722 ETKDGv3 66
#