data_ZAB
#
_chem_comp.id ZAB
_chem_comp.name "(3-{(Z)-[3-(AMINOMETHYL)PHENYL]DIAZENYL}PHENYL)ACETIC ACID"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C15 H15 N3 O2"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2006-06-01
_chem_comp.pdbx_modified_date 2011-06-04
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 269.299
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code ZAB
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details ?
_chem_comp.pdbx_ideal_coordinates_missing_flag Y
_chem_comp.pdbx_model_coordinates_db_code ?
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
ZAB N N N 0 1 N N N N N N 12.989 -1.403 2.743 -6.431 -0.695 -1.578 N ZAB 1
ZAB CA CA C 0 1 N N N N N N 12.924 0.030 2.566 -6.112 -0.671 -0.145 CA ZAB 2
ZAB CB CB C 0 1 Y N N N N N 13.722 0.676 3.673 -4.834 0.098 0.072 CB ZAB 3
ZAB CG2 CG2 C 0 1 Y N N N N N 13.099 1.062 4.874 -4.879 1.463 0.294 CG2 ZAB 4
ZAB CD2 CD2 C 0 1 Y N N N N N 13.862 1.633 5.908 -3.711 2.177 0.494 CD2 ZAB 5
ZAB CE CE C 0 1 Y N N N N N 15.241 1.841 5.735 -2.492 1.532 0.473 CE ZAB 6
ZAB CD1 CD1 C 0 1 Y N N N N N 15.857 1.430 4.540 -2.438 0.154 0.249 CD1 ZAB 7
ZAB CG1 CG1 C 0 1 Y N N N N N 15.108 0.827 3.522 -3.623 -0.562 0.054 CG1 ZAB 8
ZAB NG NG N 0 1 N N N N N N 17.210 1.624 4.346 -1.234 -0.492 0.226 NG ZAB 9
ZAB NI NI N 0 1 N N N N N N 17.820 2.532 4.303 -0.143 0.170 0.411 NI ZAB 10
ZAB CI CI C 0 1 Y N N N N N 17.590 3.836 3.886 1.061 -0.476 0.388 CI ZAB 11
ZAB CJ2 CJ2 C 0 1 Y N N N N N 18.506 4.811 4.304 1.115 -1.854 0.164 CJ2 ZAB 12
ZAB CK2 CK2 C 0 1 Y N N N N N 18.422 6.121 3.803 2.333 -2.499 0.142 CK2 ZAB 13
ZAB CL CL C 0 1 Y N N N N N 17.405 6.464 2.902 3.502 -1.785 0.342 CL ZAB 14
ZAB CK1 CK1 C 0 1 Y N N N N N 16.464 5.500 2.497 3.457 -0.420 0.565 CK1 ZAB 15
ZAB CJ1 CJ1 C 0 1 Y N N N N N 16.560 4.180 2.985 2.246 0.240 0.583 CJ1 ZAB 16
ZAB CM CM C 0 1 N N N N N N 15.364 5.898 1.526 4.735 0.349 0.782 CM ZAB 17
ZAB C C C 0 1 N N N N N N 14.199 6.678 2.151 5.259 0.836 -0.544 C ZAB 18
ZAB O O O 0 1 N N N N N N 14.261 7.034 3.329 6.395 1.549 -0.596 O ZAB 19
ZAB OXT OXT O 0 1 N N N N N N 13.164 7.023 1.368 4.656 0.586 -1.561 OXT ZAB 20
ZAB HN1 1HN H 0 1 N N N N N N 13.820 -1.639 3.247 -5.709 -1.239 -2.027 HN1 ZAB 21
ZAB HN2 2HN H 0 1 N N N N N N 13.004 -1.850 1.848 -7.289 -1.217 -1.675 HN2 ZAB 22
ZAB HA2 2HA H 0 1 N N N N N N 11.879 0.371 2.602 -6.923 -0.188 0.400 HA2 ZAB 23
ZAB HA3 3HA H 0 1 N N N N N N 13.346 0.307 1.589 -5.988 -1.692 0.217 HA3 ZAB 24
ZAB HG2 HG2 H 0 1 N N N N N N 12.036 0.920 5.002 -5.830 1.974 0.311 HG2 ZAB 25
ZAB HD2 HD2 H 0 1 N N N N N N 13.387 1.912 6.837 -3.753 3.242 0.667 HD2 ZAB 26
ZAB HE HE H 0 1 N N N N N N 15.823 2.313 6.513 -1.581 2.091 0.629 HE ZAB 27
ZAB HG1 HG1 H 0 1 N N N N N N 15.596 0.479 2.624 -3.590 -1.627 -0.119 HG1 ZAB 28
ZAB HJ2 HJ2 H 0 1 N N N N N N 19.279 4.555 5.013 0.203 -2.413 0.009 HJ2 ZAB 29
ZAB HK2 HK2 H 0 1 N N N N N N 19.142 6.864 4.113 2.376 -3.564 -0.031 HK2 ZAB 30
ZAB HL HL H 0 1 N N N N N N 17.343 7.471 2.517 4.453 -2.295 0.324 HL ZAB 31
ZAB HJ1 HJ1 H 0 1 N N N N N N 15.846 3.434 2.669 2.212 1.305 0.757 HJ1 ZAB 32
ZAB HM2 2HM H 0 1 N N N N N N 14.938 4.961 1.138 4.540 1.202 1.431 HM2 ZAB 33
ZAB HM3 3HM H 0 1 N N N N N N 15.816 6.536 0.752 5.475 -0.301 1.248 HM3 ZAB 34
ZAB HXT HXT H 0 1 N N N N N N 12.550 7.549 1.867 ? ? ? HXT ZAB 35
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
ZAB N CA SING N N 1
ZAB N HN1 SING N N 2
ZAB N HN2 SING N N 3
ZAB CA CB SING N N 4
ZAB CA HA2 SING N N 5
ZAB CA HA3 SING N N 6
ZAB CB CG2 SING Y N 7
ZAB CB CG1 DOUB Y N 8
ZAB CG2 CD2 DOUB Y N 9
ZAB CG2 HG2 SING N N 10
ZAB CD2 CE SING Y N 11
ZAB CD2 HD2 SING N N 12
ZAB CE CD1 DOUB Y N 13
ZAB CE HE SING N N 14
ZAB CD1 CG1 SING Y N 15
ZAB CD1 NG SING N N 16
ZAB CG1 HG1 SING N N 17
ZAB NG NI DOUB N N 18
ZAB NI CI SING N N 19
ZAB CI CJ2 SING Y N 20
ZAB CI CJ1 DOUB Y N 21
ZAB CJ2 CK2 DOUB Y N 22
ZAB CJ2 HJ2 SING N N 23
ZAB CK2 CL SING Y N 24
ZAB CK2 HK2 SING N N 25
ZAB CL CK1 DOUB Y N 26
ZAB CL HL SING N N 27
ZAB CK1 CJ1 SING Y N 28
ZAB CK1 CM SING N N 29
ZAB CJ1 HJ1 SING N N 30
ZAB CM C SING N N 31
ZAB CM HM2 SING N N 32
ZAB CM HM3 SING N N 33
ZAB C O DOUB N N 34
ZAB C OXT SING N N 35
ZAB OXT HXT SING N N 36
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
ZAB SMILES ACDLabs 10.04 O=C(O)Cc2cccc(\N=N/c1cccc(c1)CN)c2
ZAB SMILES_CANONICAL CACTVS 3.341 NCc1cccc(c1)N=Nc2cccc(CC(O)=O)c2
ZAB SMILES CACTVS 3.341 NCc1cccc(c1)N=Nc2cccc(CC(O)=O)c2
ZAB SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 c1cc(cc(c1)N=Nc2cccc(c2)CN)CC(=O)O
ZAB SMILES "OpenEye OEToolkits" 1.5.0 c1cc(cc(c1)N=Nc2cccc(c2)CN)CC(=O)O
ZAB InChI InChI 1.03 InChI=1S/C15H15N3O2/c16-10-12-4-2-6-14(8-12)18-17-13-5-1-3-11(7-13)9-15(19)20/h1-8H,9-10,16H2,(H,19,20)/b18-17-
ZAB InChIKey InChI 1.03 RHNJRPYVLIXHAK-ZCXUNETKSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
ZAB "SYSTEMATIC NAME" ACDLabs 10.04 "(3-{(Z)-[3-(aminomethyl)phenyl]diazenyl}phenyl)acetic acid"
ZAB "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "2-[3-[3-(aminomethyl)phenyl]diazenylphenyl]ethanoic acid"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
ZAB 'Create component' 2006-06-01 RCSB
ZAB 'Modify descriptor' 2011-06-04 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
ZAB N N -6.367 -2.245 1
ZAB CA C -5.068 -2.996 2
ZAB CB C -3.769 -2.247 3
ZAB CG2 C -3.768 -0.747 4
ZAB CD2 C -2.468 0.002 5
ZAB CE C -1.170 -0.749 6
ZAB CD1 C -1.171 -2.249 7
ZAB CG1 C -2.471 -2.998 8
ZAB NG N 0.128 -3.000 9
ZAB NI N 1.427 -2.251 10
ZAB CI C 1.428 -0.751 11
ZAB CJ2 C 0.130 -0.000 12
ZAB CK2 C 0.131 1.500 13
ZAB CL C 1.431 2.249 14
ZAB CK1 C 2.729 1.498 15
ZAB CJ1 C 2.728 -0.002 16
ZAB CM C 4.029 2.247 17
ZAB C C 4.030 3.747 18
ZAB O O 2.731 4.498 19
ZAB OXT O 5.330 4.496 20
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
ZAB N CA SINGLE NONE 1
ZAB CA CB SINGLE NONE 2
ZAB CB CG2 DOUBLE NONE 3
ZAB CB CG1 SINGLE NONE 4
ZAB CG2 CD2 SINGLE NONE 5
ZAB CD2 CE DOUBLE NONE 6
ZAB CE CD1 SINGLE NONE 7
ZAB CD1 CG1 DOUBLE NONE 8
ZAB CD1 NG SINGLE ENDUPRIGHT 9
ZAB NG NI DOUBLE NONE 10
ZAB NI CI SINGLE ENDDOWNRIGHT 11
ZAB CI CJ2 DOUBLE NONE 12
ZAB CI CJ1 SINGLE NONE 13
ZAB CJ2 CK2 SINGLE NONE 14
ZAB CK2 CL DOUBLE NONE 15
ZAB CL CK1 SINGLE NONE 16
ZAB CK1 CJ1 DOUBLE NONE 17
ZAB CK1 CM SINGLE NONE 18
ZAB CM C SINGLE NONE 19
ZAB C O DOUBLE NONE 20
ZAB C OXT SINGLE NONE 21
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
ZAB MurckoScaffold S1 scaffold c1ccc(/N=N\c2ccccc2)cc1 InChI=1S/C12H10N2/c1-3-7-11(8-4-1)13-14-12-9-5-2-6-10-12/h1-10H/b14-13- DMLAVOWQYNRWNQ-YPKPFQOOSA-N
ZAB phenyl F1 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
ZAB CB S1 1
ZAB CG2 S1 1
ZAB CD2 S1 1
ZAB CE S1 1
ZAB CD1 S1 1
ZAB CG1 S1 1
ZAB NG S1 1
ZAB NI S1 1
ZAB CI S1 1
ZAB CJ2 S1 1
ZAB CK2 S1 1
ZAB CL S1 1
ZAB CK1 S1 1
ZAB CJ1 S1 1
ZAB CB F1 1
ZAB CG2 F1 1
ZAB CD2 F1 1
ZAB CE F1 1
ZAB CD1 F1 1
ZAB CG1 F1 1
ZAB CI F1 2
ZAB CJ2 F1 2
ZAB CK2 F1 2
ZAB CL F1 2
ZAB CK1 F1 2
ZAB CJ1 F1 2
#
_pdbe_chem_comp_rdkit_properties.comp_id ZAB
_pdbe_chem_comp_rdkit_properties.exactmw 269.116
_pdbe_chem_comp_rdkit_properties.amw 269.304
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 5
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 3
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 6
_pdbe_chem_comp_rdkit_properties.NumHBD 2
_pdbe_chem_comp_rdkit_properties.NumHBA 5
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 20
_pdbe_chem_comp_rdkit_properties.NumAtoms 35
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 5
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.133
_pdbe_chem_comp_rdkit_properties.NumRings 2
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 137.603
_pdbe_chem_comp_rdkit_properties.tpsa 88.040
_pdbe_chem_comp_rdkit_properties.CrippenClogP 2.317
_pdbe_chem_comp_rdkit_properties.CrippenMR 74.111
_pdbe_chem_comp_rdkit_properties.chi0v 9.658
_pdbe_chem_comp_rdkit_properties.chi1v 5.029
_pdbe_chem_comp_rdkit_properties.chi2v 1.812
_pdbe_chem_comp_rdkit_properties.chi3v 1.812
_pdbe_chem_comp_rdkit_properties.chi4v 1.088
_pdbe_chem_comp_rdkit_properties.chi0n 24.658
_pdbe_chem_comp_rdkit_properties.chi1n 12.332
_pdbe_chem_comp_rdkit_properties.chi2n 1.812
_pdbe_chem_comp_rdkit_properties.chi3n 1.812
_pdbe_chem_comp_rdkit_properties.chi4n 1.088
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -2.530
_pdbe_chem_comp_rdkit_properties.kappa1 4.230
_pdbe_chem_comp_rdkit_properties.kappa2 6.583
_pdbe_chem_comp_rdkit_properties.kappa3 3.996
_pdbe_chem_comp_rdkit_properties.Phi 1.392
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
ZAB UniChem PDBe ZAB
ZAB UniChem ZINC ZINC000103562504
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
ZAB N -5.120 -0.237 -1.701 ETKDGv3 1
ZAB CA -5.220 -0.109 -0.251 ETKDGv3 2
ZAB CB -3.864 -0.288 0.374 ETKDGv3 3
ZAB CG2 -3.393 -1.517 0.649 ETKDGv3 4
ZAB CD2 -2.049 -1.683 1.238 ETKDGv3 5
ZAB CE -1.280 -0.613 1.469 ETKDGv3 6
ZAB CD1 -1.765 0.746 1.114 ETKDGv3 7
ZAB CG1 -3.005 0.896 0.626 ETKDGv3 8
ZAB NG -0.969 1.913 1.376 ETKDGv3 9
ZAB NI 0.286 2.026 1.153 ETKDGv3 10
ZAB CI 1.105 1.077 0.451 ETKDGv3 11
ZAB CJ2 0.715 0.547 -0.723 ETKDGv3 12
ZAB CK2 1.598 -0.391 -1.444 ETKDGv3 13
ZAB CL 2.801 -0.697 -0.948 ETKDGv3 14
ZAB CK1 3.257 -0.095 0.329 ETKDGv3 15
ZAB CJ1 2.452 0.765 0.978 ETKDGv3 16
ZAB CM 4.635 -0.399 0.849 ETKDGv3 17
ZAB C 5.622 0.572 0.285 ETKDGv3 18
ZAB O 5.885 1.637 0.905 ETKDGv3 19
ZAB OXT 6.216 0.319 -0.947 ETKDGv3 20
ZAB HN1 -6.087 -0.172 -2.093 ETKDGv3 21
ZAB HN2 -4.595 0.591 -2.066 ETKDGv3 22
ZAB HA2 -5.923 -0.877 0.141 ETKDGv3 23
ZAB HA3 -5.636 0.888 0.014 ETKDGv3 24
ZAB HG2 -3.993 -2.396 0.450 ETKDGv3 25
ZAB HD2 -1.693 -2.672 1.492 ETKDGv3 26
ZAB HE -0.309 -0.745 1.928 ETKDGv3 27
ZAB HG1 -3.378 1.886 0.394 ETKDGv3 28
ZAB HJ2 -0.240 0.810 -1.161 ETKDGv3 29
ZAB HK2 1.270 -0.824 -2.380 ETKDGv3 30
ZAB HL 3.446 -1.380 -1.487 ETKDGv3 31
ZAB HJ1 2.778 1.234 1.899 ETKDGv3 32
ZAB HM2 4.929 -1.431 0.559 ETKDGv3 33
ZAB HM3 4.653 -0.355 1.960 ETKDGv3 34
ZAB HXT 6.874 0.975 -1.351 ETKDGv3 35
#