data_ZID
#
_chem_comp.id ZID
_chem_comp.name "ISONICOTINIC-ACETYL-NICOTINAMIDE-ADENINE DINUCLEOTIDE"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C27 H30 N8 O15 P2"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 1999-07-08
_chem_comp.pdbx_modified_date 2012-01-05
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 768.519
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code ZID
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 1ZID
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site EBI
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
ZID PA AP P 0 1 N N S N N N -1.211 34.450 11.310 2.398 0.575 -2.273 PA ZID 1
ZID O1A AO1 O 0 1 N N N N N N -1.704 33.054 11.081 3.089 -0.077 -3.408 O1A ZID 2
ZID O2A AO2 O 0 1 N N N N N N -0.131 35.015 10.469 1.546 1.830 -2.812 O2A ZID 3
ZID O5B AO5* O 0 1 N N N N N N -0.645 34.600 12.854 3.488 1.086 -1.203 O5B ZID 4
ZID C5B AC5* C 0 1 N N N N N N -1.072 33.749 13.971 4.571 1.952 -1.549 C5B ZID 5
ZID C4B AC4* C 0 1 N N R N N N -0.275 32.544 14.450 5.412 2.239 -0.303 C4B ZID 6
ZID O4B AO4* O 0 1 N N N N N N -0.971 31.290 14.695 6.059 1.034 0.138 O4B ZID 7
ZID C3B AC3* C 0 1 N N S N N N 0.939 32.136 13.672 6.519 3.256 -0.641 C3B ZID 8
ZID O3B AO3* O 0 1 N N N N N N 2.010 32.906 14.147 6.380 4.431 0.160 O3B ZID 9
ZID C2B AC2* C 0 1 N N R N N N 1.169 30.704 14.129 7.833 2.516 -0.295 C2B ZID 10
ZID O2B AO2* O 0 1 N N N N N N 2.511 30.380 14.508 8.759 3.394 0.349 O2B ZID 11
ZID C1B AC1* C 0 1 N N R N N N 0.148 30.581 15.244 7.340 1.418 0.682 C1B ZID 12
ZID N9A AN9 N 0 1 Y N N N N N 0.145 29.084 15.680 8.262 0.279 0.687 N9A ZID 13
ZID C8A AC8 C 0 1 Y N N N N N -0.742 28.077 15.535 8.191 -0.819 -0.118 C8A ZID 14
ZID N7A AN7 N 0 1 Y N N N N N -0.709 27.234 16.588 9.169 -1.633 0.154 N7A ZID 15
ZID C5A AC5 C 0 1 Y N N N N N 0.232 27.734 17.349 9.927 -1.111 1.148 C5A ZID 16
ZID C6A AC6 C 0 1 Y N N N N N 0.659 27.255 18.622 11.080 -1.528 1.835 C6A ZID 17
ZID N6A AN6 N 0 1 N N N N N N 0.180 26.264 18.992 11.688 -2.733 1.531 N6A ZID 18
ZID N1A AN1 N 0 1 Y N N N N N 1.575 27.977 19.306 11.571 -0.739 2.784 N1A ZID 19
ZID C2A AC2 C 0 1 Y N N N N N 2.070 29.147 18.840 10.998 0.413 3.082 C2A ZID 20
ZID N3A AN3 N 0 1 Y N N N N N 1.692 29.655 17.663 9.918 0.844 2.465 N3A ZID 21
ZID C4A AC4 C 0 1 Y N N N N N 0.727 28.928 16.859 9.358 0.125 1.497 C4A ZID 22
ZID O3 O3 O 0 1 N N N N N N -2.523 35.286 10.963 1.409 -0.481 -1.567 O3 ZID 23
ZID PN NP P 0 1 N N N N N N -3.118 36.681 11.428 0.418 -1.625 -2.118 PN ZID 24
ZID O1N NO1 O 0 1 N N N N N N -4.151 37.217 10.468 -0.306 -1.114 -3.384 O1N ZID 25
ZID O2N NO2 O -1 1 N N N N N N -1.889 37.422 11.754 1.234 -2.890 -2.466 O2N ZID 26
ZID O5D NO5* O 0 1 N N N N N N -3.826 36.266 12.816 -0.670 -1.983 -0.986 O5D ZID 27
ZID C5D NC5* C 0 1 N N N N N N -3.458 36.829 14.076 -1.753 -2.888 -1.206 C5D ZID 28
ZID C4D NC4* C 0 1 N N R N N N -4.655 36.736 15.022 -2.591 -3.000 0.069 C4D ZID 29
ZID O4D NO4* O 0 1 N N N N N N -5.449 37.872 14.662 -3.238 -1.745 0.341 O4D ZID 30
ZID C3D NC3* C 0 1 N N S N N N -5.554 35.504 14.868 -3.699 -4.054 -0.123 C3D ZID 31
ZID O3D NO3* O 0 1 N N N N N N -5.985 34.922 16.094 -3.559 -5.107 0.834 O3D ZID 32
ZID C2D NC2* C 0 1 N N R N N N -6.710 36.054 14.037 -5.013 -3.273 0.121 C2D ZID 33
ZID O2D NO2* O 0 1 N N N N N N -7.984 35.417 13.998 -5.937 -4.053 0.882 O2D ZID 34
ZID C1D NC1* C 0 1 N N R N N N -6.813 37.466 14.522 -4.518 -2.051 0.936 C1D ZID 35
ZID N1N NN1 N 1 1 Y N N N N N -7.483 38.295 13.494 -5.439 -0.922 0.785 N1N ZID 36
ZID C2N NC2 C 0 1 Y N N N N N -7.080 38.282 12.150 -6.254 -0.628 1.778 C2N ZID 37
ZID C3N NC3 C 0 1 Y N N N N N -7.946 38.771 11.172 -7.145 0.438 1.675 C3N ZID 38
ZID C7N NC7 C 0 1 N N N N N N -7.559 38.833 9.680 -8.058 0.767 2.791 C7N ZID 39
ZID O7N NO7 O 0 1 N N N N N N -6.700 39.613 9.237 -8.757 1.759 2.732 O7N ZID 40
ZID N7N NN7 N 0 1 N N N N N N -8.255 37.983 8.923 -8.115 -0.035 3.873 N7N ZID 41
ZID C4N NC4 C 0 1 Y N N N N N -9.221 39.238 11.538 -7.161 1.198 0.486 C4N ZID 42
ZID C5N NC5 C 0 1 Y N N N N N -9.507 39.446 12.888 -6.276 0.840 -0.533 C5N ZID 43
ZID C6N NC6 C 0 1 Y N N N N N -8.657 38.958 13.874 -5.423 -0.232 -0.338 C6N ZID 44
ZID C7Z ZC7 C 0 1 N N N N N N -10.206 38.134 11.102 -8.089 2.340 0.324 C7Z ZID 45
ZID O7Z ZO7 O 0 1 N N N N N N -9.781 36.962 11.055 -7.675 3.478 0.423 O7Z ZID 46
ZID N1Z ZN1 N 0 1 Y N N N N N -14.325 38.866 10.210 -12.170 1.645 -0.487 N1Z ZID 47
ZID C2Z ZC2 C 0 1 Y N N N N N -13.537 39.921 10.436 -11.726 2.886 -0.462 C2Z ZID 48
ZID C3Z ZC3 C 0 1 Y N N N N N -12.192 39.709 10.718 -10.398 3.160 -0.201 C3Z ZID 49
ZID C4Z ZC4 C 0 1 Y N N N N N -11.674 38.407 10.758 -9.521 2.096 0.040 C4Z ZID 50
ZID C5Z ZC5 C 0 1 Y N N N N N -12.519 37.339 10.465 -10.035 0.795 0.003 C5Z ZID 51
ZID C6Z ZC6 C 0 1 Y N N N N N -13.861 37.617 10.183 -11.378 0.614 -0.266 C6Z ZID 52
ZID HOA2 2HOA H 0 0 N N N N N N 0.181 35.900 10.614 1.066 2.306 -2.121 HOA2 ZID 53
ZID H51A AH51 H 0 0 N N N N N N -1.233 34.412 14.852 5.193 1.472 -2.304 H51A ZID 54
ZID H52A AH52 H 0 0 N N N N N N -2.105 33.396 13.744 4.176 2.888 -1.944 H52A ZID 55
ZID H4B AH4* H 0 1 N N N N N N 0.001 33.038 15.410 4.776 2.630 0.491 H4B ZID 56
ZID H3B AH3* H 0 1 N N N N N N 0.838 32.250 12.567 6.491 3.513 -1.700 H3B ZID 57
ZID HO3A AHO3 H 0 0 N N N N N N 2.779 32.647 13.653 7.051 5.106 -0.011 HO3A ZID 58
ZID H2B AH2* H 0 1 N N N N N N 1.036 29.960 13.309 8.277 2.073 -1.187 H2B ZID 59
ZID HO2A AHO2 H 0 0 N N N N N N 2.654 29.485 14.793 9.027 4.148 -0.192 HO2A ZID 60
ZID H1B AH1* H 0 1 N N N N N N 0.279 31.042 16.250 7.224 1.823 1.687 H1B ZID 61
ZID H8A AH8 H 0 1 N N N N N N -1.409 27.957 14.665 7.434 -0.988 -0.870 H8A ZID 62
ZID H61A AH61 H 0 0 N N N N N N 0.485 25.921 19.902 11.320 -3.300 0.835 H61A ZID 63
ZID H62A AH62 H 0 0 N N N N N N 0.312 25.536 18.289 12.483 -3.010 2.012 H62A ZID 64
ZID H2A AH2 H 0 1 N N N N N N 2.807 29.706 19.440 11.430 1.023 3.860 H2A ZID 65
ZID H51N NH51 H 0 0 N N N N N N -2.540 36.359 14.501 -2.377 -2.517 -2.019 H51N ZID 66
ZID H52N NH52 H 0 0 N N N N N N -3.068 37.869 13.981 -1.359 -3.870 -1.469 H52N ZID 67
ZID H4D NH4* H 0 1 N N N N N N -4.269 36.681 16.066 -1.954 -3.278 0.909 H4D ZID 68
ZID H3D NH3* H 0 1 N N N N N N -5.017 34.648 14.395 -3.673 -4.455 -1.136 H3D ZID 69
ZID HO3N NHO3 H 0 0 N N N N N N -6.542 34.158 15.998 -4.230 -5.799 0.758 HO3N ZID 70
ZID H2D NH2* H 0 1 N N N N N N -6.448 35.880 12.967 -5.458 -2.957 -0.823 H2D ZID 71
ZID HO2N NHO2 H 0 0 N N N N N N -8.703 35.759 13.480 -6.206 -4.875 0.451 HO2N ZID 72
ZID H1D NH1* H 0 1 N N N N N N -7.397 37.568 15.465 -4.399 -2.313 1.987 H1D ZID 73
ZID H2N NH2 H 0 1 N N N N N N -6.089 37.890 11.864 -6.230 -1.219 2.681 H2N ZID 74
ZID H71N NH71 H 0 0 N N N N N N -8.960 37.342 9.286 -7.557 -0.827 3.920 H71N ZID 75
ZID H72N NH72 H 0 0 N N N N N N -7.999 38.024 7.936 -8.714 0.181 4.606 H72N ZID 76
ZID H5N NH5 H 0 1 N N N N N N -10.414 40.001 13.178 -6.256 1.395 -1.459 H5N ZID 77
ZID H6N NH6 H 0 1 N N N N N N -8.909 39.094 14.939 -4.733 -0.510 -1.122 H6N ZID 78
ZID H2Z ZH2 H 0 1 N N N N N N -13.980 40.929 10.391 -12.411 3.700 -0.649 H2Z ZID 79
ZID H3Z ZH3 H 0 1 N N N N N N -11.535 40.574 10.910 -10.042 4.179 -0.183 H3Z ZID 80
ZID H5Z ZH5 H 0 1 N N N N N N -12.137 36.304 10.456 -9.393 -0.054 0.183 H5Z ZID 81
ZID H6Z ZH6 H 0 1 N N N N N N -14.581 36.820 9.929 -11.785 -0.386 -0.296 H6Z ZID 82
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
ZID PA O1A DOUB N N 1
ZID PA O2A SING N N 2
ZID PA O5B SING N N 3
ZID PA O3 SING N N 4
ZID O2A HOA2 SING N N 5
ZID O5B C5B SING N N 6
ZID C5B C4B SING N N 7
ZID C5B H51A SING N N 8
ZID C5B H52A SING N N 9
ZID C4B O4B SING N N 10
ZID C4B C3B SING N N 11
ZID C4B H4B SING N N 12
ZID O4B C1B SING N N 13
ZID C3B O3B SING N N 14
ZID C3B C2B SING N N 15
ZID C3B H3B SING N N 16
ZID O3B HO3A SING N N 17
ZID C2B O2B SING N N 18
ZID C2B C1B SING N N 19
ZID C2B H2B SING N N 20
ZID O2B HO2A SING N N 21
ZID C1B N9A SING N N 22
ZID C1B H1B SING N N 23
ZID N9A C8A SING Y N 24
ZID N9A C4A SING Y N 25
ZID C8A N7A DOUB Y N 26
ZID C8A H8A SING N N 27
ZID N7A C5A SING Y N 28
ZID C5A C6A SING Y N 29
ZID C5A C4A DOUB Y N 30
ZID C6A N6A SING N N 31
ZID C6A N1A DOUB Y N 32
ZID N6A H61A SING N N 33
ZID N6A H62A SING N N 34
ZID N1A C2A SING Y N 35
ZID C2A N3A DOUB Y N 36
ZID C2A H2A SING N N 37
ZID N3A C4A SING Y N 38
ZID O3 PN SING N N 39
ZID PN O1N DOUB N N 40
ZID PN O2N SING N N 41
ZID PN O5D SING N N 42
ZID O5D C5D SING N N 43
ZID C5D C4D SING N N 44
ZID C5D H51N SING N N 45
ZID C5D H52N SING N N 46
ZID C4D O4D SING N N 47
ZID C4D C3D SING N N 48
ZID C4D H4D SING N N 49
ZID O4D C1D SING N N 50
ZID C3D O3D SING N N 51
ZID C3D C2D SING N N 52
ZID C3D H3D SING N N 53
ZID O3D HO3N SING N N 54
ZID C2D O2D SING N N 55
ZID C2D C1D SING N N 56
ZID C2D H2D SING N N 57
ZID O2D HO2N SING N N 58
ZID C1D N1N SING N N 59
ZID C1D H1D SING N N 60
ZID N1N C2N SING Y N 61
ZID N1N C6N DOUB Y N 62
ZID C2N C3N DOUB Y N 63
ZID C2N H2N SING N N 64
ZID C3N C7N SING N N 65
ZID C3N C4N SING Y N 66
ZID C7N O7N DOUB N N 67
ZID C7N N7N SING N N 68
ZID N7N H71N SING N N 69
ZID N7N H72N SING N N 70
ZID C4N C5N DOUB Y N 71
ZID C4N C7Z SING N N 72
ZID C5N C6N SING Y N 73
ZID C5N H5N SING N N 74
ZID C6N H6N SING N N 75
ZID C7Z O7Z DOUB N N 76
ZID C7Z C4Z SING N N 77
ZID N1Z C2Z DOUB Y N 78
ZID N1Z C6Z SING Y N 79
ZID C2Z C3Z SING Y N 80
ZID C2Z H2Z SING N N 81
ZID C3Z C4Z DOUB Y N 82
ZID C3Z H3Z SING N N 83
ZID C4Z C5Z SING Y N 84
ZID C5Z C6Z DOUB Y N 85
ZID C5Z H5Z SING N N 86
ZID C6Z H6Z SING N N 87
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
ZID InChI InChI 1.03 InChI=1S/C27H30N8O15P2/c28-23-17-25(32-10-31-23)35(11-33-17)27-22(40)20(38)16(49-27)9-47-52(44,45)50-51(42,43)46-8-15-19(37)21(39)26(48-15)34-6-3-13(14(7-34)24(29)41)18(36)12-1-4-30-5-2-12/h1-7,10-11,15-16,19-22,26-27,37-40H,8-9H2,(H5-,28,29,31,32,41,42,43,44,45)/t15-,16-,19-,20-,21-,22-,26-,27-/m1/s1
ZID InChIKey InChI 1.03 SURAWYIAXPVHGO-XDBKRARRSA-N
ZID SMILES_CANONICAL CACTVS 3.385 NC(=O)c1c[n+](ccc1C(=O)c2ccncc2)[C@@H]3O[C@H](CO[P]([O-])(=O)O[P](O)(=O)OC[C@H]4O[C@H]([C@H](O)[C@@H]4O)n5cnc6c(N)ncnc56)[C@@H](O)[C@H]3O
ZID SMILES CACTVS 3.385 NC(=O)c1c[n+](ccc1C(=O)c2ccncc2)[CH]3O[CH](CO[P]([O-])(=O)O[P](O)(=O)OC[CH]4O[CH]([CH](O)[CH]4O)n5cnc6c(N)ncnc56)[CH](O)[CH]3O
ZID SMILES_CANONICAL "OpenEye OEToolkits" 1.7.5 c1cnccc1C(=O)c2cc[n+](cc2C(=O)N)[C@H]3[C@@H]([C@@H]([C@H](O3)COP(=O)([O-])O[P@@](=O)(O)OC[C@@H]4[C@H]([C@H]([C@@H](O4)n5cnc6c5ncnc6N)O)O)O)O
ZID SMILES "OpenEye OEToolkits" 1.7.5 c1cnccc1C(=O)c2cc[n+](cc2C(=O)N)C3C(C(C(O3)COP(=O)([O-])OP(=O)(O)OCC4C(C(C(O4)n5cnc6c5ncnc6N)O)O)O)O
#
_pdbx_chem_comp_identifier.comp_id ZID
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 1.5.0
_pdbx_chem_comp_identifier.identifier
"[(2R,3S,4R,5R)-5-(3-aminocarbonyl-4-pyridin-4-ylcarbonyl-pyridin-1-ium-1-yl)-3,4-dihydroxy-oxolan-2-yl]methyl [[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-dihydroxy-oxolan-2-yl]methoxy-hydroxy-phosphoryl] phosphate"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
ZID 'Create component' 1999-07-08 EBI
ZID 'Modify descriptor' 2011-06-04 RCSB
ZID 'Modify descriptor' 2012-01-05 RCSB
ZID 'Modify coordinates' 2012-01-05 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
ZID PA P 7.571 -0.213 1
ZID O1A O 8.998 0.248 2
ZID O2A O 6.144 -0.674 3
ZID O5B O 8.032 -1.640 4
ZID C5B C 7.027 -2.753 5
ZID C4B C 7.487 -4.181 6
ZID O4B O 6.604 -5.393 7
ZID C3B C 8.913 -4.647 8
ZID O3B O 10.129 -3.767 9
ZID C2B C 8.911 -6.146 10
ZID O2B O 10.123 -7.030 11
ZID C1B C 7.483 -6.607 12
ZID N9A N 7.018 -8.033 13
ZID C8A C 7.893 -9.241 14
ZID N7A N 7.018 -10.447 15
ZID C5A C 5.598 -9.991 16
ZID C6A C 4.299 -10.741 17
ZID N6A N 4.299 -12.240 18
ZID N1A N 3.000 -9.991 19
ZID C2A C 3.000 -8.491 20
ZID N3A N 4.299 -7.740 21
ZID C4A C 5.598 -8.491 22
ZID O3 O 7.110 1.215 23
ZID PN P 8.116 2.328 24
ZID O1N O 7.003 3.333 25
ZID O2N O 9.229 1.322 26
ZID O5D O 9.121 3.441 27
ZID C5D C 8.660 4.868 28
ZID C4D C 9.666 5.981 29
ZID O4D O 11.157 5.822 30
ZID C3D C 9.357 7.449 31
ZID O3D O 7.987 8.061 32
ZID C2D C 10.657 8.196 33
ZID O2D O 10.816 9.688 34
ZID C1D C 11.770 7.191 35
ZID N1N N 13.238 7.500 36
ZID C2N C 14.239 6.384 37
ZID C3N C 15.707 6.693 38
ZID C7N C 16.709 5.577 39
ZID O7N O 18.177 5.886 40
ZID N7N N 16.243 4.151 41
ZID C4N C 16.173 8.119 42
ZID C5N C 15.171 9.235 43
ZID C6N C 13.704 8.926 44
ZID C7Z C 17.641 8.428 45
ZID O7Z O 18.643 7.312 46
ZID N1Z N 19.039 12.705 47
ZID C2Z C 17.571 12.396 48
ZID C3Z C 17.105 10.970 49
ZID C4Z C 18.107 9.854 50
ZID C5Z C 19.575 10.163 51
ZID C6Z C 20.041 11.589 52
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
ZID PA O1A DOUBLE NONE 1
ZID PA O2A SINGLE BEGINWEDGE 2
ZID PA O5B SINGLE NONE 3
ZID PA O3 SINGLE NONE 4
ZID O5B C5B SINGLE NONE 5
ZID C4B C5B SINGLE BEGINDASH 6
ZID C4B O4B SINGLE NONE 7
ZID C4B C3B SINGLE NONE 8
ZID O4B C1B SINGLE NONE 9
ZID C3B O3B SINGLE BEGINWEDGE 10
ZID C3B C2B SINGLE NONE 11
ZID C2B O2B SINGLE BEGINWEDGE 12
ZID C2B C1B SINGLE NONE 13
ZID C1B N9A SINGLE BEGINDASH 14
ZID N9A C8A SINGLE NONE 15
ZID N9A C4A SINGLE NONE 16
ZID C8A N7A DOUBLE NONE 17
ZID N7A C5A SINGLE NONE 18
ZID C5A C6A SINGLE NONE 19
ZID C5A C4A DOUBLE NONE 20
ZID C6A N6A SINGLE NONE 21
ZID C6A N1A DOUBLE NONE 22
ZID N1A C2A SINGLE NONE 23
ZID C2A N3A DOUBLE NONE 24
ZID N3A C4A SINGLE NONE 25
ZID O3 PN SINGLE NONE 26
ZID PN O1N DOUBLE NONE 27
ZID PN O2N SINGLE BEGINDASH 28
ZID PN O5D SINGLE NONE 29
ZID O5D C5D SINGLE NONE 30
ZID C4D C5D SINGLE BEGINDASH 31
ZID C4D O4D SINGLE NONE 32
ZID C4D C3D SINGLE NONE 33
ZID O4D C1D SINGLE NONE 34
ZID C3D O3D SINGLE BEGINWEDGE 35
ZID C3D C2D SINGLE NONE 36
ZID C2D O2D SINGLE BEGINWEDGE 37
ZID C2D C1D SINGLE NONE 38
ZID C1D N1N SINGLE BEGINDASH 39
ZID N1N C2N DOUBLE NONE 40
ZID N1N C6N SINGLE NONE 41
ZID C2N C3N SINGLE NONE 42
ZID C3N C7N SINGLE NONE 43
ZID C3N C4N DOUBLE NONE 44
ZID C7N O7N DOUBLE NONE 45
ZID C7N N7N SINGLE NONE 46
ZID C4N C5N SINGLE NONE 47
ZID C4N C7Z SINGLE NONE 48
ZID C5N C6N DOUBLE NONE 49
ZID C7Z O7Z DOUBLE NONE 50
ZID C7Z C4Z SINGLE NONE 51
ZID N1Z C2Z DOUBLE NONE 52
ZID N1Z C6Z SINGLE NONE 53
ZID C2Z C3Z SINGLE NONE 54
ZID C3Z C4Z DOUBLE NONE 55
ZID C4Z C5Z SINGLE NONE 56
ZID C5Z C6Z DOUBLE NONE 57
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
ZID MurckoScaffold S1 scaffold 'O=C(c1ccncc1)c1cc[n+]([C@H]2CC[C@@H](CO[PH](=O)O[PH](=O)OC[C@@H]3CC[C@H](n4cnc5cncnc54)O3)O2)cc1' InChI=1S/C26H29N6O8P2/c33-25(18-5-9-27-10-6-18)19-7-11-31(12-8-19)23-3-1-20(38-23)14-36-41(34)40-42(35)37-15-21-2-4-24(39-21)32-17-30-22-13-28-16-29-26(22)32/h5-13,16-17,20-21,23-24,41-42H,1-4,14-15H2/q+1/t20-,21-,23+,24+/m0/s1 XSHZUPCQYMRKFT-NEUULRRLSA-N
ZID adenine F1 fragment 'Nc1ncnc2nc[nH]c12' InChI=1S/C5H5N5/c6-4-3-5(9-1-7-3)10-2-8-4/h1-2H,(H3,6,7,8,9,10) GFFGJBXGBJISGV-UHFFFAOYSA-N
ZID amide F2 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
ZID imidazole F3 fragment 'c1c[nH]cn1' InChI=1S/C3H4N2/c1-2-5-3-4-1/h1-3H,(H,4,5) RAXXELZNTBOGNW-UHFFFAOYSA-N
ZID phosphate F4 fragment O=P(O)(O)O InChI=1S/H3O4P/c1-5(2,3)4/h(H3,1,2,3,4) NBIIXXVUZAFLBC-UHFFFAOYSA-N
ZID purine F5 fragment 'c1ncc2[nH]cnc2n1' InChI=1S/C5H4N4/c1-4-5(8-2-6-1)9-3-7-4/h1-3H,(H,6,7,8,9) KDCGOANMDULRCW-UHFFFAOYSA-N
ZID pyridine F6 fragment c1ccncc1 InChI=1S/C5H5N/c1-2-4-6-5-3-1/h1-5H JUJWROOIHBZHMG-UHFFFAOYSA-N
ZID pyrimidine F7 fragment c1cncnc1 InChI=1S/C4H4N2/c1-2-5-4-6-3-1/h1-4H CZPWVGJYEJSRLH-UHFFFAOYSA-N
ZID ribose F8 fragment OCC1OCC(O)C1O InChI=1S/C5H10O4/c6-1-4-5(8)3(7)2-9-4/h3-8H,1-2H2 KZVAAIRBJJYZOW-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
ZID PA S1 1
ZID O1A S1 1
ZID O5B S1 1
ZID C5B S1 1
ZID C4B S1 1
ZID O4B S1 1
ZID C3B S1 1
ZID C2B S1 1
ZID C1B S1 1
ZID N9A S1 1
ZID C8A S1 1
ZID N7A S1 1
ZID C5A S1 1
ZID C6A S1 1
ZID N1A S1 1
ZID C2A S1 1
ZID N3A S1 1
ZID C4A S1 1
ZID O3 S1 1
ZID PN S1 1
ZID O1N S1 1
ZID O5D S1 1
ZID C5D S1 1
ZID C4D S1 1
ZID O4D S1 1
ZID C3D S1 1
ZID C2D S1 1
ZID C1D S1 1
ZID N1N S1 1
ZID C2N S1 1
ZID C3N S1 1
ZID C4N S1 1
ZID C5N S1 1
ZID C6N S1 1
ZID C7Z S1 1
ZID O7Z S1 1
ZID N1Z S1 1
ZID C2Z S1 1
ZID C3Z S1 1
ZID C4Z S1 1
ZID C5Z S1 1
ZID C6Z S1 1
ZID N1A F1 1
ZID C6A F1 1
ZID C5A F1 1
ZID C4A F1 1
ZID N3A F1 1
ZID C2A F1 1
ZID N9A F1 1
ZID C8A F1 1
ZID N7A F1 1
ZID N6A F1 1
ZID N7N F2 1
ZID C7N F2 1
ZID O7N F2 1
ZID C3N F2 1
ZID C5A F3 1
ZID C4A F3 1
ZID N9A F3 1
ZID C8A F3 1
ZID N7A F3 1
ZID O2A F4 1
ZID PA F4 1
ZID O1A F4 1
ZID O5B F4 1
ZID O3 F4 1
ZID O3 F4 2
ZID PN F4 2
ZID O1N F4 2
ZID O2N F4 2
ZID O5D F4 2
ZID N7A F5 1
ZID C8A F5 1
ZID N9A F5 1
ZID C4A F5 1
ZID C5A F5 1
ZID C6A F5 1
ZID N1A F5 1
ZID C2A F5 1
ZID N3A F5 1
ZID C2N F6 1
ZID C3N F6 1
ZID C4N F6 1
ZID C5N F6 1
ZID C6N F6 1
ZID N1N F6 1
ZID C2Z F6 2
ZID C3Z F6 2
ZID C4Z F6 2
ZID C5Z F6 2
ZID C6Z F6 2
ZID N1Z F6 2
ZID C5A F7 1
ZID C6A F7 1
ZID N1A F7 1
ZID C2A F7 1
ZID N3A F7 1
ZID C4A F7 1
ZID C2B F8 1
ZID C3B F8 1
ZID C4B F8 1
ZID O4B F8 1
ZID C1B F8 1
ZID C5B F8 1
ZID O5B F8 1
ZID O3B F8 1
ZID O2B F8 1
ZID C2D F8 2
ZID C3D F8 2
ZID C4D F8 2
ZID O4D F8 2
ZID C1D F8 2
ZID C5D F8 2
ZID O5D F8 2
ZID O3D F8 2
ZID O2D F8 2
#
_pdbe_chem_comp_rdkit_properties.comp_id ZID
_pdbe_chem_comp_rdkit_properties.exactmw 768.131
_pdbe_chem_comp_rdkit_properties.amw 768.526
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 23
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 9
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 19
_pdbe_chem_comp_rdkit_properties.NumHBD 7
_pdbe_chem_comp_rdkit_properties.NumHBA 21
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 52
_pdbe_chem_comp_rdkit_properties.NumAtoms 82
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 25
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 1
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.370
_pdbe_chem_comp_rdkit_properties.NumRings 6
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 4
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 2
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 6
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 4
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 10
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 333.572
_pdbe_chem_comp_rdkit_properties.tpsa 351.050
_pdbe_chem_comp_rdkit_properties.CrippenClogP -3.995
_pdbe_chem_comp_rdkit_properties.CrippenMR 161.000
_pdbe_chem_comp_rdkit_properties.chi0v 25.885
_pdbe_chem_comp_rdkit_properties.chi1v 15.659
_pdbe_chem_comp_rdkit_properties.chi2v 8.064
_pdbe_chem_comp_rdkit_properties.chi3v 8.064
_pdbe_chem_comp_rdkit_properties.chi4v 5.327
_pdbe_chem_comp_rdkit_properties.chi0n 54.096
_pdbe_chem_comp_rdkit_properties.chi1n 27.068
_pdbe_chem_comp_rdkit_properties.chi2n 5.834
_pdbe_chem_comp_rdkit_properties.chi3n 5.834
_pdbe_chem_comp_rdkit_properties.chi4n 3.691
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -4.190
_pdbe_chem_comp_rdkit_properties.kappa1 15.277
_pdbe_chem_comp_rdkit_properties.kappa2 14.677
_pdbe_chem_comp_rdkit_properties.kappa3 7.628
_pdbe_chem_comp_rdkit_properties.Phi 4.312
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
ZID UniChem PDBe ZID
ZID UniChem PubChem 5289618
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
ZID PA 2.183 -0.512 1.638 ETKDGv3 1
ZID O1A 2.245 0.137 0.272 ETKDGv3 2
ZID O2A 1.036 0.299 2.584 ETKDGv3 3
ZID O5B 3.701 -0.360 2.399 ETKDGv3 4
ZID C5B 4.633 -1.149 1.696 ETKDGv3 5
ZID C4B 6.030 -0.949 2.294 ETKDGv3 6
ZID O4B 6.938 -1.831 1.670 ETKDGv3 7
ZID C3B 6.542 0.480 2.118 ETKDGv3 8
ZID O3B 6.196 1.295 3.209 ETKDGv3 9
ZID C2B 8.036 0.283 2.025 ETKDGv3 10
ZID O2B 8.674 0.432 3.273 ETKDGv3 11
ZID C1B 8.166 -1.153 1.503 ETKDGv3 12
ZID N9A 8.534 -1.160 0.088 ETKDGv3 13
ZID C8A 7.694 -0.797 -1.019 ETKDGv3 14
ZID N7A 8.351 -0.402 -2.071 ETKDGv3 15
ZID C5A 9.716 -0.480 -1.678 ETKDGv3 16
ZID C6A 10.907 0.019 -2.376 ETKDGv3 17
ZID N6A 10.837 0.493 -3.720 ETKDGv3 18
ZID N1A 12.042 0.026 -1.728 ETKDGv3 19
ZID C2A 12.127 -0.433 -0.355 ETKDGv3 20
ZID N3A 11.062 -0.863 0.268 ETKDGv3 21
ZID C4A 9.819 -0.896 -0.444 ETKDGv3 22
ZID O3 1.783 -2.162 1.487 ETKDGv3 23
ZID PN 0.155 -2.260 0.999 ETKDGv3 24
ZID O1N -0.743 -1.902 2.164 ETKDGv3 25
ZID O2N -0.163 -3.855 0.534 ETKDGv3 26
ZID O5D -0.136 -1.218 -0.321 ETKDGv3 27
ZID C5D -1.491 -1.326 -0.688 ETKDGv3 28
ZID C4D -1.783 -0.356 -1.839 ETKDGv3 29
ZID O4D -3.103 -0.572 -2.300 ETKDGv3 30
ZID C3D -1.629 1.109 -1.404 ETKDGv3 31
ZID O3D -1.028 1.858 -2.430 ETKDGv3 32
ZID C2D -3.058 1.543 -1.202 ETKDGv3 33
ZID O2D -3.258 2.898 -1.515 ETKDGv3 34
ZID C1D -3.810 0.643 -2.170 ETKDGv3 35
ZID N1N -5.187 0.401 -1.705 ETKDGv3 36
ZID C2N -5.437 -0.479 -0.767 ETKDGv3 37
ZID C3N -6.816 -0.696 -0.264 ETKDGv3 38
ZID C7N -7.012 -1.682 0.823 ETKDGv3 39
ZID O7N -6.389 -2.777 0.787 ETKDGv3 40
ZID N7N -7.851 -1.393 1.943 ETKDGv3 41
ZID C4N -7.827 0.030 -0.798 ETKDGv3 42
ZID C5N -7.514 1.034 -1.839 ETKDGv3 43
ZID C6N -6.256 1.202 -2.253 ETKDGv3 44
ZID C7Z -9.251 -0.204 -0.455 ETKDGv3 45
ZID O7Z -9.691 -1.386 -0.462 ETKDGv3 46
ZID N1Z -11.962 2.968 0.504 ETKDGv3 47
ZID C2Z -10.683 3.173 0.629 ETKDGv3 48
ZID C3Z -9.724 2.100 0.303 ETKDGv3 49
ZID C4Z -10.177 0.910 -0.135 ETKDGv3 50
ZID C5Z -11.643 0.708 -0.256 ETKDGv3 51
ZID C6Z -12.479 1.706 0.052 ETKDGv3 52
ZID HOA2 1.127 -0.099 3.486 ETKDGv3 53
ZID H51A 4.371 -2.226 1.794 ETKDGv3 54
ZID H52A 4.663 -0.879 0.616 ETKDGv3 55
ZID H4B 5.992 -1.204 3.377 ETKDGv3 56
ZID H3B 6.179 0.923 1.159 ETKDGv3 57
ZID HO3A 5.287 1.648 3.025 ETKDGv3 58
ZID H2B 8.477 1.022 1.319 ETKDGv3 59
ZID HO2A 8.293 -0.239 3.899 ETKDGv3 60
ZID H1B 8.949 -1.702 2.071 ETKDGv3 61
ZID H8A 6.613 -0.819 -0.982 ETKDGv3 62
ZID H61A 9.931 0.489 -4.239 ETKDGv3 63
ZID H62A 11.693 0.849 -4.200 ETKDGv3 64
ZID H2A 13.077 -0.405 0.162 ETKDGv3 65
ZID H51N -2.162 -1.076 0.166 ETKDGv3 66
ZID H52N -1.714 -2.359 -1.040 ETKDGv3 67
ZID H4D -1.079 -0.587 -2.670 ETKDGv3 68
ZID H3D -1.054 1.231 -0.455 ETKDGv3 69
ZID HO3N -0.054 1.673 -2.379 ETKDGv3 70
ZID H2D -3.371 1.333 -0.152 ETKDGv3 71
ZID HO2N -2.864 3.418 -0.766 ETKDGv3 72
ZID H1D -3.829 1.120 -3.177 ETKDGv3 73
ZID H2N -4.630 -1.054 -0.327 ETKDGv3 74
ZID H71N -8.262 -0.442 2.078 ETKDGv3 75
ZID H72N -8.004 -2.113 2.684 ETKDGv3 76
ZID H5N -8.304 1.631 -2.279 ETKDGv3 77
ZID H6N -6.047 1.944 -3.014 ETKDGv3 78
ZID H2Z -10.324 4.133 0.974 ETKDGv3 79
ZID H3Z -8.667 2.286 0.441 ETKDGv3 80
ZID H5Z -12.043 -0.239 -0.599 ETKDGv3 81
ZID H6Z -13.549 1.566 -0.039 ETKDGv3 82
#