data_ZPN
#
_chem_comp.id ZPN
_chem_comp.name
(2Z,4E)-N-[(S)-[(1S,2E,5S,8E,10Z,17S)-3,11-dimethyl-19-methylidene-7,13-dioxo-6,21-dioxabicyclo[15.3.1]henicosa-2,8,10-trien-5-yl](hydroxy)methyl]hexa-2,4-dienamide
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C29 H39 N O6"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms "(-)-ZAMPANOLIDE (Bound form)"
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2012-12-20
_chem_comp.pdbx_modified_date 2021-03-01
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 497.623
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code ZPN
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 4I4T
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
ZPN C1 C1 C 0 1 N N N N N N -0.054 -2.210 -39.137 -1.086 1.273 -0.057 C1 ZPN 1
ZPN O1 O1 O 0 1 N N N N N N 0.754 -3.142 -39.137 -1.184 1.359 -1.267 O1 ZPN 2
ZPN C2 C2 C 0 1 N N N N N N -0.593 -1.579 -40.331 -0.438 2.305 0.667 C2 ZPN 3
ZPN C3 C3 C 0 1 N N N N N N -0.072 -1.774 -41.555 0.347 3.179 -0.003 C3 ZPN 4
ZPN C4 C4 C 0 1 N N N N N N -0.591 -1.001 -42.668 1.046 4.256 0.695 C4 ZPN 5
ZPN C5 C5 C 0 1 N N N N N N -0.049 -1.062 -43.887 2.321 4.510 0.376 C5 ZPN 6
ZPN C21 C21 C 0 1 N N N N N N -0.404 -0.045 -44.934 3.055 5.627 1.067 C21 ZPN 7
ZPN C6 C6 C 0 1 N N N N N N 1.190 -1.877 -44.116 3.019 3.669 -0.660 C6 ZPN 8
ZPN C7 C7 C 0 1 N N N N N N 2.332 -0.915 -44.227 4.313 3.143 -0.096 C7 ZPN 9
ZPN O7 O7 O 0 1 N N N N N N 2.993 -0.862 -45.260 5.282 3.862 -0.042 O7 ZPN 10
ZPN C8 C8 C 0 1 N N N N N N 2.270 0.260 -43.298 4.402 1.724 0.402 C8 ZPN 11
ZPN C9 C9 C 0 1 N N N N N N 3.569 0.360 -42.495 4.562 0.774 -0.785 C9 ZPN 12
ZPN C10 C10 C 0 1 N N N N N N 3.480 1.616 -41.608 5.555 -0.334 -0.431 C10 ZPN 13
ZPN C11 C11 C 0 1 N N S N N N 3.800 1.468 -40.117 4.896 -1.697 -0.654 C11 ZPN 14
ZPN C12 C12 C 0 1 N N N N N N 4.170 2.871 -39.626 5.812 -2.798 -0.117 C12 ZPN 15
ZPN C13 C13 C 0 1 N N N N N N 4.236 2.904 -38.123 5.004 -3.738 0.742 C13 ZPN 16
ZPN C22 C22 C 0 1 N N N N N N 5.302 3.384 -37.487 5.502 -4.201 1.861 C22 ZPN 17
ZPN C14 C14 C 0 1 N N N N N N 3.097 2.247 -37.403 3.619 -4.141 0.304 C14 ZPN 18
ZPN C15 C15 C 0 1 N N S N N N 2.883 0.851 -38.012 2.874 -2.912 -0.222 C15 ZPN 19
ZPN O11 O11 O 0 1 N N N N N N 2.651 0.994 -39.419 3.648 -1.739 0.041 O11 ZPN 20
ZPN C16 C16 C 0 1 N N N N N N 1.688 0.203 -37.363 1.537 -2.787 0.462 C16 ZPN 21
ZPN C17 C17 C 0 1 N N N N N N 1.678 -1.038 -36.850 0.528 -2.214 -0.154 C17 ZPN 22
ZPN C23 C23 C 0 1 N N N N N N 2.904 -1.881 -36.635 0.707 -1.696 -1.558 C23 ZPN 23
ZPN C18 C18 C 0 1 N N N N N N 0.547 -1.481 -35.994 -0.806 -2.085 0.536 C18 ZPN 24
ZPN C19 C19 C 0 1 N N S N N N -0.469 -2.350 -36.766 -1.658 -1.021 -0.159 C19 ZPN 25
ZPN O19 O19 O 0 1 N N N N N N -0.870 -2.042 -38.104 -1.597 0.203 0.576 O19 ZPN 26
ZPN C20 C20 C 0 1 N N S N N N -1.492 -3.098 -35.916 -3.109 -1.499 -0.232 C20 ZPN 27
ZPN O20 O20 O 0 1 N N N N N N -2.004 -4.268 -36.540 -3.172 -2.719 -0.973 O20 ZPN 28
ZPN N20 N20 N 0 1 N N N N N N -2.533 -2.077 -35.747 -3.926 -0.481 -0.897 N20 ZPN 29
ZPN "C1'" "C1'" C 0 1 N N N N N N -3.376 -2.125 -34.693 -5.165 -0.207 -0.441 "C1'" ZPN 30
ZPN "O1'" "O1'" O 0 1 N N N N N N -3.223 -3.023 -33.847 -5.604 -0.805 0.523 "O1'" ZPN 31
ZPN "C2'" "C2'" C 0 1 N N N N N N -4.368 -1.047 -34.693 -5.980 0.809 -1.106 "C2'" ZPN 32
ZPN "C3'" "C3'" C 0 1 N N N N N N -5.409 -0.980 -33.827 -7.259 1.010 -0.717 "C3'" ZPN 33
ZPN "C4'" "C4'" C 0 1 N N N N N N -5.513 -1.770 -32.607 -7.882 0.101 0.246 "C4'" ZPN 34
ZPN "C5'" "C5'" C 0 1 N N N N N N -6.593 -1.668 -31.814 -9.097 0.370 0.728 "C5'" ZPN 35
ZPN "C6'" "C6'" C 0 1 N N N N N N -6.821 -2.507 -30.589 -9.738 -0.566 1.719 "C6'" ZPN 36
ZPN H21 H21 H 0 1 N N N N N N -1.448 -0.926 -40.230 -0.541 2.374 1.737 H21 ZPN 37
ZPN H31 H31 H 0 1 N N N N N N 0.719 -2.493 -41.707 0.453 3.082 -1.074 H31 ZPN 38
ZPN H41 H41 H 0 1 N N N N N N -1.442 -0.356 -42.505 0.573 4.807 1.482 H41 ZPN 39
ZPN H211 H211 H 0 0 N N N N N N -1.327 0.476 -44.641 2.391 6.108 1.786 H211 ZPN 40
ZPN H212 H212 H 0 0 N N N N N N 0.414 0.684 -45.029 3.923 5.224 1.588 H212 ZPN 41
ZPN H213 H213 H 0 0 N N N N N N -0.559 -0.551 -45.899 3.382 6.359 0.328 H213 ZPN 42
ZPN H62 H62 H 0 1 N N N N N N 1.094 -2.458 -45.045 2.379 2.832 -0.940 H62 ZPN 43
ZPN H61 H61 H 0 1 N N N N N N 1.353 -2.562 -43.271 3.228 4.276 -1.541 H61 ZPN 44
ZPN H81 H81 H 0 1 N N N N N N 2.132 1.181 -43.884 5.261 1.625 1.065 H81 ZPN 45
ZPN H82 H82 H 0 1 N N N N N N 1.423 0.134 -42.607 3.492 1.473 0.947 H82 ZPN 46
ZPN H91 H91 H 0 1 N N N N N N 3.690 -0.534 -41.866 3.596 0.331 -1.028 H91 ZPN 47
ZPN H92 H92 H 0 1 N Y N N N N 4.426 0.445 -43.179 4.932 1.330 -1.646 H92 ZPN 48
ZPN H102 H102 H 0 0 N N N N N N 4.179 2.358 -42.021 6.437 -0.248 -1.065 H102 ZPN 49
ZPN H162 H162 H 0 0 N N N N N N 2.452 1.999 -41.685 5.848 -0.238 0.615 H162 ZPN 50
ZPN H141 H141 H 0 0 N N N N N N 4.656 0.790 -39.986 4.722 -1.852 -1.718 H141 ZPN 51
ZPN H151 H151 H 0 0 N N N N N N 5.151 3.151 -40.037 6.247 -3.349 -0.951 H151 ZPN 52
ZPN H142 H142 H 0 0 N N N N N N 3.410 3.587 -39.971 6.607 -2.352 0.481 H142 ZPN 53
ZPN H223 H223 H 0 0 N N N N N N 5.369 3.308 -36.412 6.494 -3.910 2.172 H223 ZPN 54
ZPN H222 H222 H 0 0 N N N N N N 6.100 3.850 -38.046 4.919 -4.874 2.474 H222 ZPN 55
ZPN H121 H121 H 0 0 N N N N N N 3.337 2.154 -36.334 3.690 -4.888 -0.487 H121 ZPN 56
ZPN H122 H122 H 0 0 N N N N N N 2.184 2.849 -37.523 3.077 -4.560 1.151 H122 ZPN 57
ZPN H111 H111 H 0 0 N N N N N N 3.778 0.238 -37.829 2.721 -3.022 -1.296 H111 ZPN 58
ZPN H101 H101 H 0 0 N N N N N N 0.775 0.777 -37.306 1.414 -3.163 1.463 H101 ZPN 59
ZPN H231 H231 H 0 0 N N N N N N 2.612 -2.850 -36.204 1.749 -1.807 -1.856 H231 ZPN 60
ZPN H232 H232 H 0 0 N N N N N N 3.409 -2.046 -37.598 0.072 -2.264 -2.238 H232 ZPN 61
ZPN H233 H233 H 0 0 N N N N N N 3.588 -1.364 -35.946 0.428 -0.643 -1.595 H233 ZPN 62
ZPN H181 H181 H 0 0 N N N N N N 0.948 -2.068 -35.154 -1.325 -3.043 0.502 H181 ZPN 63
ZPN H182 H182 H 0 0 N N N N N N 0.028 -0.592 -35.606 -0.648 -1.796 1.575 H182 ZPN 64
ZPN H191 H191 H 0 0 N N N N N N 0.195 -3.198 -36.987 -1.280 -0.856 -1.168 H191 ZPN 65
ZPN H201 H201 H 0 0 N N N N N N -1.043 -3.342 -34.942 -3.487 -1.666 0.777 H201 ZPN 66
ZPN H202 H202 H 0 0 N N N N N N -2.632 -4.686 -35.963 -2.851 -2.645 -1.881 H202 ZPN 67
ZPN H203 H203 H 0 0 N N N N N N -2.619 -1.340 -36.418 -3.576 -0.004 -1.666 H203 ZPN 68
ZPN "H2'1" "H2'1" H 0 0 N N N N N N -4.264 -0.260 -35.425 -5.560 1.400 -1.907 "H2'1" ZPN 69
ZPN "H3'1" "H3'1" H 0 0 N N N N N N -6.213 -0.297 -34.056 -7.821 1.840 -1.117 "H3'1" ZPN 70
ZPN "H4'1" "H4'1" H 0 0 N N N N N N -4.714 -2.444 -32.337 -7.359 -0.788 0.567 "H4'1" ZPN 71
ZPN H6 H6 H 0 1 N N N N N N -7.344 -0.937 -32.074 -9.620 1.258 0.407 H6 ZPN 72
ZPN H7 H7 H 0 1 N N N N N N -7.777 -2.225 -30.123 -9.846 -1.554 1.270 H7 ZPN 73
ZPN H8 H8 H 0 1 N N N N N N -6.851 -3.569 -30.873 -9.112 -0.638 2.609 H8 ZPN 74
ZPN H9 H9 H 0 1 N N N N N N -6.002 -2.342 -29.874 -10.721 -0.184 1.997 H9 ZPN 75
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
ZPN O7 C7 DOUB N N 1
ZPN C21 C5 SING N N 2
ZPN C7 C6 SING N N 3
ZPN C7 C8 SING N N 4
ZPN C6 C5 SING N N 5
ZPN C5 C4 DOUB N Z 6
ZPN C8 C9 SING N N 7
ZPN C4 C3 SING N N 8
ZPN C9 C10 SING N N 9
ZPN C10 C11 SING N N 10
ZPN C3 C2 DOUB N E 11
ZPN C2 C1 SING N N 12
ZPN C11 C12 SING N N 13
ZPN C11 O11 SING N N 14
ZPN C12 C13 SING N N 15
ZPN O11 C15 SING N N 16
ZPN O1 C1 DOUB N N 17
ZPN C1 O19 SING N N 18
ZPN C13 C22 DOUB N N 19
ZPN C13 C14 SING N N 20
ZPN O19 C19 SING N N 21
ZPN C15 C14 SING N N 22
ZPN C15 C16 SING N N 23
ZPN C16 C17 DOUB N E 24
ZPN C17 C23 SING N N 25
ZPN C17 C18 SING N N 26
ZPN C19 C18 SING N N 27
ZPN C19 C20 SING N N 28
ZPN O20 C20 SING N N 29
ZPN C20 N20 SING N N 30
ZPN N20 "C1'" SING N N 31
ZPN "C2'" "C1'" SING N N 32
ZPN "C2'" "C3'" DOUB N Z 33
ZPN "C1'" "O1'" DOUB N N 34
ZPN "C3'" "C4'" SING N N 35
ZPN "C4'" "C5'" DOUB N E 36
ZPN "C5'" "C6'" SING N N 37
ZPN C2 H21 SING N N 38
ZPN C3 H31 SING N N 39
ZPN C4 H41 SING N N 40
ZPN C21 H211 SING N N 41
ZPN C21 H212 SING N N 42
ZPN C21 H213 SING N N 43
ZPN C6 H62 SING N N 44
ZPN C6 H61 SING N N 45
ZPN C8 H81 SING N N 46
ZPN C8 H82 SING N N 47
ZPN C9 H91 SING N N 48
ZPN C9 H92 SING N N 49
ZPN C10 H102 SING N N 50
ZPN C10 H162 SING N N 51
ZPN C11 H141 SING N N 52
ZPN C12 H151 SING N N 53
ZPN C12 H142 SING N N 54
ZPN C22 H223 SING N N 55
ZPN C22 H222 SING N N 56
ZPN C14 H121 SING N N 57
ZPN C14 H122 SING N N 58
ZPN C15 H111 SING N N 59
ZPN C16 H101 SING N N 60
ZPN C23 H231 SING N N 61
ZPN C23 H232 SING N N 62
ZPN C23 H233 SING N N 63
ZPN C18 H181 SING N N 64
ZPN C18 H182 SING N N 65
ZPN C19 H191 SING N N 66
ZPN C20 H201 SING N N 67
ZPN O20 H202 SING N N 68
ZPN N20 H203 SING N N 69
ZPN "C2'" "H2'1" SING N N 70
ZPN "C3'" "H3'1" SING N N 71
ZPN "C4'" "H4'1" SING N N 72
ZPN "C5'" H6 SING N N 73
ZPN "C6'" H7 SING N N 74
ZPN "C6'" H8 SING N N 75
ZPN "C6'" H9 SING N N 76
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
ZPN SMILES ACDLabs 12.01 O=C(/C=C\C=C\C)NC(O)C1OC(=O)C=CC=C(CC(=O)CCCC2OC(C=C(C)C1)CC(=C)/C2)C
ZPN InChI InChI 1.03 InChI=1S/C29H39NO6/c1-5-6-7-13-27(32)30-29(34)26-19-22(4)18-25-17-21(3)16-24(35-25)12-9-11-23(31)15-20(2)10-8-14-28(33)36-26/h5-8,10,13-14,18,24-26,29,34H,3,9,11-12,15-17,19H2,1-2,4H3,(H,30,32)/b6-5+,13-7-,14-8+,20-10-,22-18+/t24-,25-,26-,29-/m0/s1
ZPN InChIKey InChI 1.03 KNEMNZWQWFRUIB-KZVIXHMTSA-N
ZPN SMILES_CANONICAL CACTVS 3.370 C\C=C\C=C/C(=O)N[C@@H](O)[C@@H]1CC(=C/[C@@H]2CC(=C)C[C@H](CCCC(=O)CC(=C\C=C\C(=O)O1)/C)O2)/C
ZPN SMILES CACTVS 3.370 CC=CC=CC(=O)N[CH](O)[CH]1CC(=C[CH]2CC(=C)C[CH](CCCC(=O)CC(=CC=CC(=O)O1)C)O2)C
ZPN SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 C/C=C/C=C\C(=O)N[C@H]([C@@H]1C/C(=C/[C@@H]2CC(=C)C[C@@H](O2)CCCC(=O)C/C(=C\C=C\C(=O)O1)/C)/C)O
ZPN SMILES "OpenEye OEToolkits" 1.7.6 CC=CC=CC(=O)NC(C1CC(=CC2CC(=C)CC(O2)CCCC(=O)CC(=CC=CC(=O)O1)C)C)O
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
ZPN "SYSTEMATIC NAME" ACDLabs 12.01 (2Z,4E)-N-[(S)-[(1S,2E,5S,8E,10Z,17S)-3,11-dimethyl-19-methylidene-7,13-dioxo-6,21-dioxabicyclo[15.3.1]henicosa-2,8,10-trien-5-yl](hydroxy)methyl]hexa-2,4-dienamide
ZPN "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 (2Z,4E)-N-[(S)-[(1S,7Z,9E,13S,15E,17S)-7,15-dimethyl-19-methylidene-5,11-bis(oxidanylidene)-12,21-dioxabicyclo[15.3.1]henicosa-7,9,15-trien-13-yl]-oxidanyl-methyl]hexa-2,4-dienamide
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
ZPN 'Create component' 2012-12-20 RCSB
ZPN 'Other modification' 2013-01-17 RCSB
ZPN 'Initial release' 2013-01-18 RCSB
ZPN 'Modify synonyms' 2021-03-01 PDBE
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id ZPN
_pdbx_chem_comp_synonyms.name "(-)-ZAMPANOLIDE (Bound form)"
_pdbx_chem_comp_synonyms.provenance ?
_pdbx_chem_comp_synonyms.type ?
#
_pdbe_chem_comp_synonyms.comp_id ZPN
_pdbe_chem_comp_synonyms.name '(-)-ZAMPANOLIDE (Bound form)'
_pdbe_chem_comp_synonyms.provenance wwPDB
_pdbe_chem_comp_synonyms.type ?
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
ZPN C1 C 11.724 1.215 1
ZPN O1 O 13.023 0.465 2
ZPN C2 C 11.724 2.715 3
ZPN C3 C 10.425 3.465 4
ZPN C4 C 10.425 4.965 5
ZPN C5 C 9.126 5.715 6
ZPN C21 C 9.126 7.215 7
ZPN C6 C 7.827 4.965 8
ZPN C7 C 6.528 5.715 9
ZPN O7 O 6.528 7.215 10
ZPN C8 C 5.229 4.965 11
ZPN C9 C 5.229 3.465 12
ZPN C10 C 3.930 2.715 13
ZPN C11 C 3.930 1.215 14
ZPN C12 C 5.229 1.965 15
ZPN C13 C 6.528 1.215 16
ZPN C22 C 7.827 1.965 17
ZPN C14 C 6.528 -0.285 18
ZPN C15 C 5.229 -1.035 19
ZPN O11 O 3.930 -0.285 20
ZPN C16 C 6.528 -1.785 21
ZPN C17 C 7.827 -1.035 22
ZPN C23 C 7.827 0.465 23
ZPN C18 C 9.126 -1.785 24
ZPN C19 C 10.425 -1.035 25
ZPN O19 O 10.425 0.465 26
ZPN C20 C 11.724 -1.785 27
ZPN O20 O 13.023 -1.035 28
ZPN N20 N 11.724 -3.285 29
ZPN "C1'" C 13.023 -4.035 30
ZPN "O1'" O 14.322 -3.285 31
ZPN "C2'" C 13.023 -5.535 32
ZPN "C3'" C 14.322 -6.285 33
ZPN "C4'" C 15.621 -5.535 34
ZPN "C5'" C 16.921 -6.285 35
ZPN "C6'" C 18.220 -5.535 36
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
ZPN O7 C7 DOUBLE NONE 1
ZPN C21 C5 SINGLE ENDUPRIGHT 2
ZPN C7 C6 SINGLE NONE 3
ZPN C7 C8 SINGLE NONE 4
ZPN C6 C5 SINGLE ENDDOWNRIGHT 5
ZPN C5 C4 DOUBLE NONE 6
ZPN C8 C9 SINGLE NONE 7
ZPN C4 C3 SINGLE ENDUPRIGHT 8
ZPN C9 C10 SINGLE NONE 9
ZPN C10 C11 SINGLE NONE 10
ZPN C3 C2 DOUBLE NONE 11
ZPN C2 C1 SINGLE ENDUPRIGHT 12
ZPN C11 C12 SINGLE NONE 13
ZPN C11 O11 SINGLE NONE 14
ZPN C12 C13 SINGLE NONE 15
ZPN O11 C15 SINGLE NONE 16
ZPN O1 C1 DOUBLE NONE 17
ZPN C1 O19 SINGLE NONE 18
ZPN C13 C22 DOUBLE NONE 19
ZPN C13 C14 SINGLE NONE 20
ZPN O19 C19 SINGLE NONE 21
ZPN C15 C14 SINGLE NONE 22
ZPN C15 C16 SINGLE ENDUPRIGHT 23
ZPN C16 C17 DOUBLE NONE 24
ZPN C17 C23 SINGLE ENDDOWNRIGHT 25
ZPN C17 C18 SINGLE ENDUPRIGHT 26
ZPN C19 C18 SINGLE BEGINDASH 27
ZPN C19 C20 SINGLE NONE 28
ZPN C20 O20 SINGLE BEGINDASH 29
ZPN C20 N20 SINGLE NONE 30
ZPN N20 "C1'" SINGLE NONE 31
ZPN "C2'" "C1'" SINGLE ENDUPRIGHT 32
ZPN "C2'" "C3'" DOUBLE NONE 33
ZPN "C1'" "O1'" DOUBLE NONE 34
ZPN "C3'" "C4'" SINGLE ENDUPRIGHT 35
ZPN "C4'" "C5'" DOUBLE NONE 36
ZPN "C5'" "C6'" SINGLE ENDUPRIGHT 37
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
ZPN MurckoScaffold S1 scaffold 'C=C1C[C@@H]2CCCC(=O)C/C=C\C=C\C(=O)OCC/C=C/[C@H](C1)O2' InChI=1S/C20H26O4/c1-16-14-18-10-5-6-13-23-20(22)12-4-2-3-8-17(21)9-7-11-19(15-16)24-18/h2-5,10,12,18-19H,1,6-9,11,13-15H2/b3-2-,10-5+,12-4+/t18-,19+/m1/s1 DKKIOTKSHWGVQJ-HUOBHNCQSA-N
ZPN amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
ZPN C1 S1 1
ZPN O1 S1 1
ZPN C2 S1 1
ZPN C3 S1 1
ZPN C4 S1 1
ZPN C5 S1 1
ZPN C6 S1 1
ZPN C7 S1 1
ZPN O7 S1 1
ZPN C8 S1 1
ZPN C9 S1 1
ZPN C10 S1 1
ZPN C11 S1 1
ZPN C12 S1 1
ZPN C13 S1 1
ZPN C22 S1 1
ZPN C14 S1 1
ZPN C15 S1 1
ZPN O11 S1 1
ZPN C16 S1 1
ZPN C17 S1 1
ZPN C18 S1 1
ZPN C19 S1 1
ZPN O19 S1 1
ZPN N20 F1 1
ZPN "C1'" F1 1
ZPN "O1'" F1 1
ZPN "C2'" F1 1
#
_pdbe_chem_comp_rdkit_properties.comp_id ZPN
_pdbe_chem_comp_rdkit_properties.exactmw 497.278
_pdbe_chem_comp_rdkit_properties.amw 497.632
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 7
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 2
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 8
_pdbe_chem_comp_rdkit_properties.NumHBD 2
_pdbe_chem_comp_rdkit_properties.NumHBA 6
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 36
_pdbe_chem_comp_rdkit_properties.NumAtoms 75
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 7
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 1
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.483
_pdbe_chem_comp_rdkit_properties.NumRings 2
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 2
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 4
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 268.803
_pdbe_chem_comp_rdkit_properties.tpsa 101.930
_pdbe_chem_comp_rdkit_properties.CrippenClogP 4.551
_pdbe_chem_comp_rdkit_properties.CrippenMR 139.764
_pdbe_chem_comp_rdkit_properties.chi0v 17.397
_pdbe_chem_comp_rdkit_properties.chi1v 8.830
_pdbe_chem_comp_rdkit_properties.chi2v 2.987
_pdbe_chem_comp_rdkit_properties.chi3v 2.987
_pdbe_chem_comp_rdkit_properties.chi4v 1.777
_pdbe_chem_comp_rdkit_properties.chi0n 56.397
_pdbe_chem_comp_rdkit_properties.chi1n 28.186
_pdbe_chem_comp_rdkit_properties.chi2n 2.987
_pdbe_chem_comp_rdkit_properties.chi3n 2.987
_pdbe_chem_comp_rdkit_properties.chi4n 1.777
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -3.030
_pdbe_chem_comp_rdkit_properties.kappa1 6.329
_pdbe_chem_comp_rdkit_properties.kappa2 15.163
_pdbe_chem_comp_rdkit_properties.kappa3 11.140
_pdbe_chem_comp_rdkit_properties.Phi 2.666
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
ZPN UniChem ChEMBL CHEMBL4289824
ZPN UniChem PDBe ZPN
ZPN UniChem ZINC ZINC000095920530
ZPN UniChem PubChem 70680599
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
ZPN C1 0.295 -3.038 2.025 ETKDGv3 1
ZPN O1 1.215 -3.727 2.544 ETKDGv3 2
ZPN C2 -0.985 -3.693 1.719 ETKDGv3 3
ZPN C3 -2.035 -3.052 1.195 ETKDGv3 4
ZPN C4 -3.290 -3.801 0.956 ETKDGv3 5
ZPN C5 -4.510 -3.264 0.753 ETKDGv3 6
ZPN C21 -5.674 -4.213 0.624 ETKDGv3 7
ZPN C6 -4.790 -1.775 0.703 ETKDGv3 8
ZPN C7 -5.184 -1.333 -0.687 ETKDGv3 9
ZPN O7 -6.131 -1.871 -1.244 ETKDGv3 10
ZPN C8 -4.505 -0.173 -1.368 ETKDGv3 11
ZPN C9 -3.900 -0.575 -2.726 ETKDGv3 12
ZPN C10 -2.543 -1.300 -2.594 ETKDGv3 13
ZPN C11 -1.329 -0.393 -2.885 ETKDGv3 14
ZPN C12 -1.225 0.747 -1.839 ETKDGv3 15
ZPN C13 0.021 1.544 -2.075 ETKDGv3 16
ZPN C22 0.144 2.796 -1.611 ETKDGv3 17
ZPN C14 1.115 0.895 -2.861 ETKDGv3 18
ZPN C15 1.073 -0.632 -2.625 ETKDGv3 19
ZPN O11 -0.171 -1.225 -2.993 ETKDGv3 20
ZPN C16 1.391 -1.044 -1.196 ETKDGv3 21
ZPN C17 2.577 -0.886 -0.557 ETKDGv3 22
ZPN C23 3.771 -0.238 -1.220 ETKDGv3 23
ZPN C18 2.772 -1.483 0.830 ETKDGv3 24
ZPN C19 1.763 -1.030 1.923 ETKDGv3 25
ZPN O19 0.497 -1.677 1.754 ETKDGv3 26
ZPN C20 1.559 0.496 2.023 ETKDGv3 27
ZPN O20 0.755 0.947 0.967 ETKDGv3 28
ZPN N20 2.841 1.204 2.007 ETKDGv3 29
ZPN "C1'" 3.669 1.334 3.173 ETKDGv3 30
ZPN "O1'" 3.429 0.642 4.198 ETKDGv3 31
ZPN "C2'" 4.855 2.211 3.171 ETKDGv3 32
ZPN "C3'" 4.915 3.421 2.597 ETKDGv3 33
ZPN "C4'" 3.751 4.125 2.021 ETKDGv3 34
ZPN "C5'" 3.912 5.222 1.279 ETKDGv3 35
ZPN "C6'" 2.734 5.934 0.697 ETKDGv3 36
ZPN H21 -1.068 -4.749 1.956 ETKDGv3 37
ZPN H31 -1.954 -2.001 0.958 ETKDGv3 38
ZPN H41 -3.223 -4.883 1.003 ETKDGv3 39
ZPN H211 -6.641 -3.669 0.570 ETKDGv3 40
ZPN H212 -5.715 -4.886 1.507 ETKDGv3 41
ZPN H213 -5.560 -4.825 -0.296 ETKDGv3 42
ZPN H62 -3.948 -1.168 1.085 ETKDGv3 43
ZPN H61 -5.639 -1.557 1.386 ETKDGv3 44
ZPN H81 -3.733 0.270 -0.708 ETKDGv3 45
ZPN H82 -5.270 0.614 -1.541 ETKDGv3 46
ZPN H91 -3.792 0.336 -3.355 ETKDGv3 47
ZPN H92 -4.615 -1.230 -3.271 ETKDGv3 48
ZPN H102 -2.434 -1.769 -1.592 ETKDGv3 49
ZPN H162 -2.528 -2.132 -3.333 ETKDGv3 50
ZPN H141 -1.489 0.074 -3.883 ETKDGv3 51
ZPN H151 -1.209 0.332 -0.809 ETKDGv3 52
ZPN H142 -2.101 1.421 -1.944 ETKDGv3 53
ZPN H223 -0.656 3.257 -1.041 ETKDGv3 54
ZPN H222 1.048 3.370 -1.790 ETKDGv3 55
ZPN H121 2.100 1.323 -2.601 ETKDGv3 56
ZPN H122 0.948 1.102 -3.940 ETKDGv3 57
ZPN H111 1.844 -1.086 -3.282 ETKDGv3 58
ZPN H101 0.601 -1.582 -0.683 ETKDGv3 59
ZPN H231 3.860 -0.544 -2.282 ETKDGv3 60
ZPN H232 4.717 -0.537 -0.723 ETKDGv3 61
ZPN H233 3.697 0.865 -1.144 ETKDGv3 62
ZPN H181 2.739 -2.588 0.734 ETKDGv3 63
ZPN H182 3.792 -1.248 1.203 ETKDGv3 64
ZPN H191 2.183 -1.353 2.902 ETKDGv3 65
ZPN H201 1.032 0.711 2.982 ETKDGv3 66
ZPN H202 0.507 1.884 1.181 ETKDGv3 67
ZPN H203 3.154 1.643 1.113 ETKDGv3 68
ZPN "H2'1" 5.738 1.849 3.683 ETKDGv3 69
ZPN "H3'1" 5.868 3.938 2.612 ETKDGv3 70
ZPN "H4'1" 2.748 3.766 2.216 ETKDGv3 71
ZPN H6 4.905 5.607 1.079 ETKDGv3 72
ZPN H7 2.171 5.250 0.026 ETKDGv3 73
ZPN H8 3.078 6.810 0.108 ETKDGv3 74
ZPN H9 2.064 6.287 1.509 ETKDGv3 75
#