data_ZQT
#
_chem_comp.id ZQT
_chem_comp.name 9H-xanthene-1,3,6,8-tetrol
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C13 H10 O5"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2023-07-03
_chem_comp.pdbx_modified_date 2024-07-12
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 246.215
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code ZQT
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 8TCM
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
ZQT C1 C1 C 0 1 Y N N N N N -17.573 -10.270 -8.590 2.453 -1.204 -0.049 C1 ZQT 1
ZQT C2 C2 C 0 1 Y N N N N N -18.388 -9.745 -7.587 3.604 -0.451 -0.219 C2 ZQT 2
ZQT C3 C3 C 0 1 Y N N N N N -19.720 -9.432 -7.890 3.541 0.933 -0.151 C3 ZQT 3
ZQT C4 C4 C 0 1 Y N N N N N -20.211 -9.650 -9.167 2.328 1.559 0.087 C4 ZQT 4
ZQT C4A C5 C 0 1 Y N N N N N -19.388 -10.190 -10.139 1.173 0.804 0.258 C4A ZQT 5
ZQT C5 C6 C 0 1 Y N N N N N -19.826 -10.961 -13.618 -2.332 1.555 0.097 C5 ZQT 6
ZQT C5A C7 C 0 1 Y N N N N N -19.177 -10.847 -12.405 -1.175 0.802 0.263 C5A ZQT 7
ZQT C6 C8 C 0 1 Y N N N N N -19.133 -11.436 -14.714 -3.545 0.928 -0.135 C6 ZQT 8
ZQT C7 C9 C 0 1 Y N N N N N -17.784 -11.752 -14.600 -3.606 -0.456 -0.203 C7 ZQT 9
ZQT C8 C10 C 0 1 Y N N N N N -17.156 -11.630 -13.374 -2.454 -1.208 -0.040 C8 ZQT 10
ZQT C8A C11 C 0 1 Y N N N N N -17.832 -11.173 -12.241 -1.237 -0.580 0.195 C8A ZQT 11
ZQT C9 C12 C 0 1 N N N N N N -17.131 -11.061 -10.923 -0.001 -1.416 0.360 C9 ZQT 12
ZQT C9A C13 C 0 1 Y N N N N N -18.046 -10.501 -9.876 1.236 -0.578 0.184 C9A ZQT 13
ZQT O1 O1 O 0 1 N N N N N N -16.247 -10.599 -8.411 2.516 -2.560 -0.116 O1 ZQT 14
ZQT O10 O2 O 0 1 N N N N N N -19.954 -10.374 -11.378 -0.001 1.439 0.490 O10 ZQT 15
ZQT O3 O3 O 0 1 N N N N N N -20.606 -8.889 -6.998 4.668 1.674 -0.317 O3 ZQT 16
ZQT O6 O4 O 0 1 N N N N N N -19.811 -11.514 -15.893 -4.674 1.667 -0.295 O6 ZQT 17
ZQT O8 O5 O 0 1 N N N N N N -15.828 -11.957 -13.213 -2.514 -2.564 -0.108 O8 ZQT 18
ZQT H2 H1 H 0 1 N N N N N N -17.999 -9.582 -6.593 4.549 -0.940 -0.404 H2 ZQT 19
ZQT H4 H2 H 0 1 N N N N N N -21.234 -9.399 -9.403 2.280 2.636 0.145 H4 ZQT 20
ZQT H5 H3 H 0 1 N N N N N N -20.865 -10.682 -13.709 -2.285 2.633 0.150 H5 ZQT 21
ZQT H7 H4 H 0 1 N N N N N N -17.230 -12.091 -15.463 -4.551 -0.947 -0.384 H7 ZQT 22
ZQT H92 H5 H 0 1 N N N N N N -16.261 -10.397 -11.033 0.009 -1.848 1.361 H92 ZQT 23
ZQT H91 H6 H 0 1 N N N N N N -16.793 -12.060 -10.609 -0.009 -2.218 -0.377 H91 ZQT 24
ZQT H1 H7 H 0 1 N N N N N N -15.892 -10.937 -9.225 2.686 -2.988 0.734 H1 ZQT 25
ZQT HO3 H8 H 0 1 N N N N N N -20.180 -8.778 -6.156 4.842 1.925 -1.235 HO3 ZQT 26
ZQT HO6 H9 H 0 1 N N N N N N -19.235 -11.852 -16.568 -4.853 1.918 -1.212 HO6 ZQT 27
ZQT H8 H10 H 0 1 N N N N N N -15.572 -11.810 -12.310 -2.383 -2.919 -0.998 H8 ZQT 28
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
ZQT C4 C4A DOUB Y N 1
ZQT C4 C3 SING Y N 2
ZQT C5 C6 SING Y N 3
ZQT C5 C5A DOUB Y N 4
ZQT C2 C3 DOUB Y N 5
ZQT C2 C1 SING Y N 6
ZQT C7 C8 SING Y N 7
ZQT C7 C6 DOUB Y N 8
ZQT C9A C1 DOUB Y N 9
ZQT C9A C9 SING N N 10
ZQT C9A C4A SING Y N 11
ZQT C8A C5A SING Y N 12
ZQT C8A C9 SING N N 13
ZQT C8A C8 DOUB Y N 14
ZQT C4A O10 SING N N 15
ZQT C5A O10 SING N N 16
ZQT C3 O3 SING N N 17
ZQT C6 O6 SING N N 18
ZQT C1 O1 SING N N 19
ZQT C8 O8 SING N N 20
ZQT C2 H2 SING N N 21
ZQT C4 H4 SING N N 22
ZQT C5 H5 SING N N 23
ZQT C7 H7 SING N N 24
ZQT C9 H92 SING N N 25
ZQT C9 H91 SING N N 26
ZQT O1 H1 SING N N 27
ZQT O3 HO3 SING N N 28
ZQT O6 HO6 SING N N 29
ZQT O8 H8 SING N N 30
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
ZQT SMILES ACDLabs 12.01 "Oc1cc(O)cc2Oc3cc(O)cc(O)c3Cc21"
ZQT InChI InChI 1.06 "InChI=1S/C13H10O5/c14-6-1-10(16)8-5-9-11(17)2-7(15)4-13(9)18-12(8)3-6/h1-4,14-17H,5H2"
ZQT InChIKey InChI 1.06 WRWDLBILCDUPOS-UHFFFAOYSA-N
ZQT SMILES_CANONICAL CACTVS 3.385 "Oc1cc(O)c2Cc3c(O)cc(O)cc3Oc2c1"
ZQT SMILES CACTVS 3.385 "Oc1cc(O)c2Cc3c(O)cc(O)cc3Oc2c1"
ZQT SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1c(cc2c(c1O)Cc3c(cc(cc3O2)O)O)O"
ZQT SMILES "OpenEye OEToolkits" 2.0.7 "c1c(cc2c(c1O)Cc3c(cc(cc3O2)O)O)O"
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
ZQT "SYSTEMATIC NAME" ACDLabs 12.01 9H-xanthene-1,3,6,8-tetrol
ZQT "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "9~{H}-xanthene-1,3,6,8-tetrol"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
ZQT 'Create component' 2023-07-03 RCSB
ZQT 'Initial release' 2024-07-17 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
ZQT C1 C 11.742 0.565 1
ZQT C2 C 13.101 -0.206 2
ZQT C3 C 13.101 -1.768 3
ZQT C4 C 11.742 -2.539 4
ZQT C4A C 10.402 -1.737 5
ZQT C5 C 6.463 -2.539 6
ZQT C5A C 7.803 -1.737 7
ZQT C6 C 5.103 -1.768 8
ZQT C7 C 5.103 -0.206 9
ZQT C8 C 6.463 0.565 10
ZQT C8A C 7.803 -0.237 11
ZQT C9 C 9.102 0.513 12
ZQT C9A C 10.402 -0.237 13
ZQT O1 O 11.725 2.065 14
ZQT O10 O 9.102 -2.487 15
ZQT O3 O 14.398 -2.523 16
ZQT O6 O 3.807 -2.523 17
ZQT O8 O 6.480 2.065 18
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
ZQT C4 C4A SINGLE NONE 1
ZQT C4 C3 DOUBLE NONE 2
ZQT C5 C6 DOUBLE NONE 3
ZQT C5 C5A SINGLE NONE 4
ZQT C2 C3 SINGLE NONE 5
ZQT C2 C1 DOUBLE NONE 6
ZQT C7 C8 DOUBLE NONE 7
ZQT C7 C6 SINGLE NONE 8
ZQT C9A C1 SINGLE NONE 9
ZQT C9A C9 SINGLE NONE 10
ZQT C9A C4A DOUBLE NONE 11
ZQT C8A C5A DOUBLE NONE 12
ZQT C8A C9 SINGLE NONE 13
ZQT C8A C8 SINGLE NONE 14
ZQT C4A O10 SINGLE NONE 15
ZQT C5A O10 SINGLE NONE 16
ZQT C3 O3 SINGLE NONE 17
ZQT C6 O6 SINGLE NONE 18
ZQT C1 O1 SINGLE NONE 19
ZQT C8 O8 SINGLE NONE 20
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
ZQT MurckoScaffold S1 scaffold c1ccc2c(c1)Cc1ccccc1O2 InChI=1S/C13H10O/c1-3-7-12-10(5-1)9-11-6-2-4-8-13(11)14-12/h1-8H,9H2 GJCOSYZMQJWQCA-UHFFFAOYSA-N
ZQT phenyl F1 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
ZQT xanthen F2 fragment c1ccc2c(c1)Cc1ccccc1O2 InChI=1S/C13H10O/c1-3-7-12-10(5-1)9-11-6-2-4-8-13(11)14-12/h1-8H,9H2 GJCOSYZMQJWQCA-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
ZQT C1 S1 1
ZQT C2 S1 1
ZQT C3 S1 1
ZQT C4 S1 1
ZQT C4A S1 1
ZQT C5 S1 1
ZQT C5A S1 1
ZQT C6 S1 1
ZQT C7 S1 1
ZQT C8 S1 1
ZQT C8A S1 1
ZQT C9 S1 1
ZQT C9A S1 1
ZQT O10 S1 1
ZQT C1 F1 1
ZQT C2 F1 1
ZQT C3 F1 1
ZQT C4 F1 1
ZQT C4A F1 1
ZQT C9A F1 1
ZQT C5 F1 2
ZQT C6 F1 2
ZQT C7 F1 2
ZQT C8 F1 2
ZQT C8A F1 2
ZQT C5A F1 2
ZQT C2 F2 1
ZQT C3 F2 1
ZQT C4 F2 1
ZQT C4A F2 1
ZQT C9A F2 1
ZQT C1 F2 1
ZQT C9 F2 1
ZQT C8A F2 1
ZQT C5A F2 1
ZQT O10 F2 1
ZQT C5 F2 1
ZQT C6 F2 1
ZQT C7 F2 1
ZQT C8 F2 1
#
_pdbe_chem_comp_rdkit_properties.comp_id ZQT
_pdbe_chem_comp_rdkit_properties.exactmw 246.053
_pdbe_chem_comp_rdkit_properties.amw 246.218
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 5
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 4
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 4
_pdbe_chem_comp_rdkit_properties.NumHBD 4
_pdbe_chem_comp_rdkit_properties.NumHBA 5
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 18
_pdbe_chem_comp_rdkit_properties.NumAtoms 28
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 5
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.077
_pdbe_chem_comp_rdkit_properties.NumRings 3
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 116.534
_pdbe_chem_comp_rdkit_properties.tpsa 90.150
_pdbe_chem_comp_rdkit_properties.CrippenClogP -0.678
_pdbe_chem_comp_rdkit_properties.CrippenMR 58.231
_pdbe_chem_comp_rdkit_properties.chi0v 8.541
_pdbe_chem_comp_rdkit_properties.chi1v 4.725
_pdbe_chem_comp_rdkit_properties.chi2v 2.271
_pdbe_chem_comp_rdkit_properties.chi3v 2.271
_pdbe_chem_comp_rdkit_properties.chi4v 1.538
_pdbe_chem_comp_rdkit_properties.chi0n 18.541
_pdbe_chem_comp_rdkit_properties.chi1n 9.358
_pdbe_chem_comp_rdkit_properties.chi2n 2.271
_pdbe_chem_comp_rdkit_properties.chi3n 2.271
_pdbe_chem_comp_rdkit_properties.chi4n 1.538
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -2.560
_pdbe_chem_comp_rdkit_properties.kappa1 4.276
_pdbe_chem_comp_rdkit_properties.kappa2 3.464
_pdbe_chem_comp_rdkit_properties.kappa3 1.484
_pdbe_chem_comp_rdkit_properties.Phi 0.823
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
ZQT UniChem ZINC ZINC000001581505
ZQT UniChem PubChem 336323
ZQT UniChem 'EPA CompTox Dashboard' DTXSID40319749
ZQT UniChem ACTor 27393-39-1
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
ZQT C1 -2.646 1.050 0.066 ETKDGv3 1
ZQT C2 -3.739 0.271 0.114 ETKDGv3 2
ZQT C3 -3.606 -1.198 0.207 ETKDGv3 3
ZQT C4 -2.387 -1.755 0.244 ETKDGv3 4
ZQT C4A -1.178 -0.907 0.192 ETKDGv3 5
ZQT C5 2.559 -1.493 0.234 ETKDGv3 6
ZQT C5A 1.267 -0.777 0.187 ETKDGv3 7
ZQT C6 3.713 -0.809 0.192 ETKDGv3 8
ZQT C7 3.689 0.665 0.098 ETKDGv3 9
ZQT C8 2.520 1.324 0.055 ETKDGv3 10
ZQT C8A 1.241 0.568 0.101 ETKDGv3 11
ZQT C9 -0.070 1.318 0.052 ETKDGv3 12
ZQT C9A -1.294 0.434 0.107 ETKDGv3 13
ZQT O1 -2.772 2.437 -0.022 ETKDGv3 14
ZQT O10 0.080 -1.513 0.232 ETKDGv3 15
ZQT O3 -4.754 -1.986 0.255 ETKDGv3 16
ZQT O6 4.938 -1.472 0.235 ETKDGv3 17
ZQT O8 2.498 2.716 -0.033 ETKDGv3 18
ZQT H2 -4.727 0.712 0.084 ETKDGv3 19
ZQT H4 -2.278 -2.830 0.312 ETKDGv3 20
ZQT H5 2.566 -2.573 0.302 ETKDGv3 21
ZQT H7 4.625 1.208 0.065 ETKDGv3 22
ZQT H92 -0.106 2.024 0.909 ETKDGv3 23
ZQT H91 -0.103 1.910 -0.887 ETKDGv3 24
ZQT H1 -3.678 2.891 -0.052 ETKDGv3 25
ZQT HO3 -4.706 -2.996 0.320 ETKDGv3 26
ZQT HO6 4.997 -2.482 0.300 ETKDGv3 27
ZQT H8 3.350 3.264 -0.067 ETKDGv3 28
#