data_ZRE
#
_chem_comp.id ZRE
_chem_comp.name "7-fluoro-2-oxo-1,2,3,4-tetrahydroquinoline-6-carboxylic acid"
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C10 H8 F N O3"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2023-07-03
_chem_comp.pdbx_modified_date 2024-03-01
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 209.174
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code ZRE
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 8TCY
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
ZRE C14 C1 C 0 1 Y N N N N N 20.550 170.321 23.010 1.269 -1.178 -0.010 C14 ZRE 1
ZRE C13 C2 C 0 1 Y N N N N N 21.555 171.187 23.395 -0.054 -1.565 0.045 C13 ZRE 2
ZRE C12 C3 C 0 1 N N N N N N 22.109 170.014 26.955 -1.826 1.778 0.267 C12 ZRE 3
ZRE C11 C4 C 0 1 N N N N N N 22.373 171.437 27.367 -3.058 1.288 -0.495 C11 ZRE 4
ZRE C02 C5 C 0 1 N N N N N N 18.936 168.386 23.486 3.010 0.603 -0.033 C02 ZRE 5
ZRE C04 C6 C 0 1 Y N N N N N 20.033 169.351 23.894 1.599 0.183 0.025 C04 ZRE 6
ZRE C05 C7 C 0 1 Y N N N N N 20.522 169.242 25.177 0.585 1.142 0.116 C05 ZRE 7
ZRE C06 C8 C 0 1 Y N N N N N 21.543 170.115 25.547 -0.732 0.746 0.169 C06 ZRE 8
ZRE C07 C9 C 0 1 Y N N N N N 22.059 171.066 24.693 -1.058 -0.607 0.134 C07 ZRE 9
ZRE C09 C10 C 0 1 N N N N N N 23.346 172.238 26.545 -3.377 -0.127 -0.096 C09 ZRE 10
ZRE F15 F1 F 0 1 N N N N N N 20.083 170.460 21.744 2.244 -2.109 -0.091 F15 ZRE 11
ZRE N08 N1 N 0 1 N N N N N N 23.131 171.991 25.123 -2.394 -1.001 0.189 N08 ZRE 12
ZRE O01 O1 O 0 1 N N N N N N 18.045 168.025 24.314 3.325 1.913 0.001 O01 ZRE 13
ZRE O03 O2 O 0 1 N N N N N N 18.943 167.974 22.312 3.889 -0.232 -0.112 O03 ZRE 14
ZRE O10 O3 O 0 1 N N N N N N 24.141 172.974 27.042 -4.534 -0.485 -0.031 O10 ZRE 15
ZRE H1 H1 H 0 1 N N N N N N 21.939 171.933 22.715 -0.311 -2.614 0.017 H1 ZRE 16
ZRE H2 H2 H 0 1 N N N N N N 21.381 169.543 27.632 -1.480 2.716 -0.167 H2 ZRE 17
ZRE H3 H3 H 0 1 N N N N N N 23.042 169.431 26.957 -2.085 1.935 1.314 H3 ZRE 18
ZRE H4 H4 H 0 1 N N N N N N 22.756 171.414 28.398 -3.907 1.930 -0.261 H4 ZRE 19
ZRE H5 H5 H 0 1 N N N N N N 21.410 171.969 27.345 -2.860 1.326 -1.566 H5 ZRE 20
ZRE H6 H6 H 0 1 N N N N N N 20.130 168.510 25.868 0.835 2.192 0.143 H6 ZRE 21
ZRE H7 H7 H 0 1 N N N N N N 23.706 172.445 24.442 -2.617 -1.912 0.434 H7 ZRE 22
ZRE H8 H8 H 0 1 N N N N N N 17.440 167.429 23.889 4.264 2.140 -0.040 H8 ZRE 23
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
ZRE F15 C14 SING N N 1
ZRE O03 C02 DOUB N N 2
ZRE C14 C13 DOUB Y N 3
ZRE C14 C04 SING Y N 4
ZRE C13 C07 SING Y N 5
ZRE C02 C04 SING N N 6
ZRE C02 O01 SING N N 7
ZRE C04 C05 DOUB Y N 8
ZRE C07 N08 SING N N 9
ZRE C07 C06 DOUB Y N 10
ZRE N08 C09 SING N N 11
ZRE C05 C06 SING Y N 12
ZRE C06 C12 SING N N 13
ZRE C09 O10 DOUB N N 14
ZRE C09 C11 SING N N 15
ZRE C12 C11 SING N N 16
ZRE C13 H1 SING N N 17
ZRE C12 H2 SING N N 18
ZRE C12 H3 SING N N 19
ZRE C11 H4 SING N N 20
ZRE C11 H5 SING N N 21
ZRE C05 H6 SING N N 22
ZRE N08 H7 SING N N 23
ZRE O01 H8 SING N N 24
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
ZRE SMILES ACDLabs 12.01 "O=C(O)c1cc2CCC(=O)Nc2cc1F"
ZRE InChI InChI 1.06 "InChI=1S/C10H8FNO3/c11-7-4-8-5(1-2-9(13)12-8)3-6(7)10(14)15/h3-4H,1-2H2,(H,12,13)(H,14,15)"
ZRE InChIKey InChI 1.06 SAJMBBKTNYDWGD-UHFFFAOYSA-N
ZRE SMILES_CANONICAL CACTVS 3.385 "OC(=O)c1cc2CCC(=O)Nc2cc1F"
ZRE SMILES CACTVS 3.385 "OC(=O)c1cc2CCC(=O)Nc2cc1F"
ZRE SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1c2c(cc(c1C(=O)O)F)NC(=O)CC2"
ZRE SMILES "OpenEye OEToolkits" 2.0.7 "c1c2c(cc(c1C(=O)O)F)NC(=O)CC2"
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
ZRE "SYSTEMATIC NAME" ACDLabs 12.01 "7-fluoro-2-oxo-1,2,3,4-tetrahydroquinoline-6-carboxylic acid"
ZRE "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "7-fluoranyl-2-oxidanylidene-3,4-dihydro-1~{H}-quinoline-6-carboxylic acid"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
ZRE 'Create component' 2023-07-03 RCSB
ZRE 'Initial release' 2024-03-06 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
ZRE C14 C 5.598 -1.242 1
ZRE C13 C 6.897 -1.992 2
ZRE C12 C 9.537 1.060 3
ZRE C11 C 10.896 0.290 4
ZRE C02 C 4.299 1.008 5
ZRE C04 C 5.598 0.259 6
ZRE C05 C 6.897 1.008 7
ZRE C06 C 8.196 0.259 8
ZRE C07 C 8.196 -1.242 9
ZRE C09 C 10.896 -1.273 10
ZRE F15 F 4.299 -1.992 11
ZRE N08 N 9.537 -2.044 12
ZRE O01 O 3.000 0.259 13
ZRE O03 O 4.299 2.508 14
ZRE O10 O 12.192 -2.028 15
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
ZRE F15 C14 SINGLE NONE 1
ZRE O03 C02 DOUBLE NONE 2
ZRE C14 C13 DOUBLE NONE 3
ZRE C14 C04 SINGLE NONE 4
ZRE C13 C07 SINGLE NONE 5
ZRE C02 C04 SINGLE NONE 6
ZRE C02 O01 SINGLE NONE 7
ZRE C04 C05 DOUBLE NONE 8
ZRE C07 N08 SINGLE NONE 9
ZRE C07 C06 DOUBLE NONE 10
ZRE N08 C09 SINGLE NONE 11
ZRE C05 C06 SINGLE NONE 12
ZRE C06 C12 SINGLE NONE 13
ZRE C09 O10 DOUBLE NONE 14
ZRE C09 C11 SINGLE NONE 15
ZRE C12 C11 SINGLE NONE 16
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
ZRE MurckoScaffold S1 scaffold O=C1CCc2ccccc2N1 InChI=1S/C9H9NO/c11-9-6-5-7-3-1-2-4-8(7)10-9/h1-4H,5-6H2,(H,10,11) TZOYXRMEFDYWDQ-UHFFFAOYSA-N
ZRE amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
ZRE phenyl F2 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
ZRE C14 S1 1
ZRE C13 S1 1
ZRE C12 S1 1
ZRE C11 S1 1
ZRE C04 S1 1
ZRE C05 S1 1
ZRE C06 S1 1
ZRE C07 S1 1
ZRE C09 S1 1
ZRE N08 S1 1
ZRE O10 S1 1
ZRE N08 F1 1
ZRE C09 F1 1
ZRE O10 F1 1
ZRE C11 F1 1
ZRE C14 F2 1
ZRE C13 F2 1
ZRE C07 F2 1
ZRE C06 F2 1
ZRE C05 F2 1
ZRE C04 F2 1
#
_pdbe_chem_comp_rdkit_properties.comp_id ZRE
_pdbe_chem_comp_rdkit_properties.exactmw 209.049
_pdbe_chem_comp_rdkit_properties.amw 209.176
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 4
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 2
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 1
_pdbe_chem_comp_rdkit_properties.NumHBD 2
_pdbe_chem_comp_rdkit_properties.NumHBA 3
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 15
_pdbe_chem_comp_rdkit_properties.NumAtoms 23
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 5
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 1
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.200
_pdbe_chem_comp_rdkit_properties.NumRings 2
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 96.103
_pdbe_chem_comp_rdkit_properties.tpsa 66.400
_pdbe_chem_comp_rdkit_properties.CrippenClogP 0.919
_pdbe_chem_comp_rdkit_properties.CrippenMR 48.954
_pdbe_chem_comp_rdkit_properties.chi0v 7.050
_pdbe_chem_comp_rdkit_properties.chi1v 3.749
_pdbe_chem_comp_rdkit_properties.chi2v 1.646
_pdbe_chem_comp_rdkit_properties.chi3v 1.646
_pdbe_chem_comp_rdkit_properties.chi4v 1.028
_pdbe_chem_comp_rdkit_properties.chi0n 15.050
_pdbe_chem_comp_rdkit_properties.chi1n 7.604
_pdbe_chem_comp_rdkit_properties.chi2n 1.646
_pdbe_chem_comp_rdkit_properties.chi3n 1.646
_pdbe_chem_comp_rdkit_properties.chi4n 1.028
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.910
_pdbe_chem_comp_rdkit_properties.kappa1 3.921
_pdbe_chem_comp_rdkit_properties.kappa2 3.343
_pdbe_chem_comp_rdkit_properties.kappa3 1.677
_pdbe_chem_comp_rdkit_properties.Phi 0.874
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
ZRE UniChem ZINC ZINC000035348144
ZRE UniChem SureChEMBL SCHEMBL16992626
ZRE UniChem PubChem 43453281
ZRE UniChem Mcule MCULE-1095790968
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
ZRE C14 1.856 0.827 -0.914 ETKDGv3 1
ZRE C13 0.639 1.258 -1.269 ETKDGv3 2
ZRE C12 -1.659 -0.684 1.130 ETKDGv3 3
ZRE C11 -2.920 -0.727 0.256 ETKDGv3 4
ZRE C02 3.355 -0.665 0.568 ETKDGv3 5
ZRE C04 2.009 -0.192 0.162 ETKDGv3 6
ZRE C05 0.903 -0.672 0.765 ETKDGv3 7
ZRE C06 -0.446 -0.208 0.363 ETKDGv3 8
ZRE C07 -0.569 0.727 -0.603 ETKDGv3 9
ZRE C09 -3.048 0.536 -0.539 ETKDGv3 10
ZRE F15 2.941 1.336 -1.550 ETKDGv3 11
ZRE N08 -1.866 1.200 -0.996 ETKDGv3 12
ZRE O01 4.495 -0.162 -0.052 ETKDGv3 13
ZRE O03 3.482 -1.528 1.479 ETKDGv3 14
ZRE O10 -4.184 0.975 -0.859 ETKDGv3 15
ZRE H1 0.538 2.000 -2.051 ETKDGv3 16
ZRE H2 -1.476 -1.700 1.542 ETKDGv3 17
ZRE H3 -1.828 0.006 1.984 ETKDGv3 18
ZRE H4 -3.814 -0.866 0.902 ETKDGv3 19
ZRE H5 -2.855 -1.586 -0.447 ETKDGv3 20
ZRE H6 0.982 -1.406 1.558 ETKDGv3 21
ZRE H7 -1.951 2.011 -1.649 ETKDGv3 22
ZRE H8 5.418 -0.480 0.219 ETKDGv3 23
#