data_ZV7
#
_chem_comp.id ZV7
_chem_comp.name '2-chloro-N-(3-oxopropyl)acetohydrazide'
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula 'C5 H9 Cl N2 O2'
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2023-04-06
_chem_comp.pdbx_modified_date 2024-09-27
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 164.590
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code ZV7
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 8S9Z
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
_chem_comp.pdbx_pcm Y
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
ZV7 C26 C1 C 0 1 N N N Y N N -13.775 -14.008 -14.981 -1.507 0.611 -0.684 C26 ZV7 1
ZV7 C28 C2 C 0 1 N N N Y N Y -15.214 -15.885 -14.937 -3.684 -0.331 0.041 C28 ZV7 2
ZV7 C27 C3 C 0 1 N N N Y N N -14.503 -14.951 -15.894 -2.316 0.094 0.508 C27 ZV7 3
ZV7 C29 C4 C 0 1 N N N N N N -13.470 -11.794 -15.970 0.836 0.137 -0.215 C29 ZV7 4
ZV7 C30 C5 C 0 1 N N N N N N -12.643 -10.707 -16.607 2.204 0.563 0.252 C30 ZV7 5
ZV7 N2 N1 N 0 1 N N N Y Y N -11.589 -13.300 -15.880 0.035 2.311 0.179 N2 ZV7 6
ZV7 N4 N2 N 0 1 N N N Y N N -12.917 -13.008 -15.642 -0.177 1.025 -0.230 N4 ZV7 7
ZV7 O6 O1 O 0 1 N N N Y N Y -14.891 -15.931 -13.742 -4.080 -1.448 0.273 O6 ZV7 8
ZV7 O7 O2 O 0 1 N N N N N N -14.657 -11.624 -15.734 0.648 -1.005 -0.578 O7 ZV7 9
ZV7 CL1 CL1 CL 0 0 N N N N N N -13.201 -10.468 -18.253 3.336 -0.838 0.155 CL1 ZV7 10
ZV7 H1 H1 H 0 1 N N N Y N N -14.526 -13.468 -14.386 -1.408 -0.182 -1.426 H1 ZV7 11
ZV7 H2 H2 H 0 1 N N N Y N N -13.140 -14.608 -14.313 -2.021 1.463 -1.130 H2 ZV7 12
ZV7 H3 H3 H 0 1 N N N Y N Y -16.011 -16.517 -15.300 -4.309 0.362 -0.501 H3 ZV7 13
ZV7 H4 H4 H 0 1 N N N Y N N -15.224 -14.410 -16.525 -1.802 -0.758 0.954 H4 ZV7 14
ZV7 H5 H5 H 0 1 N N N Y N N -13.798 -15.503 -16.533 -2.415 0.887 1.250 H5 ZV7 15
ZV7 H6 H6 H 0 1 N N N N N N -11.584 -11.004 -16.615 2.570 1.370 -0.383 H6 ZV7 16
ZV7 H7 H7 H 0 1 N N N N N N -12.758 -9.773 -16.038 2.144 0.911 1.283 H7 ZV7 17
ZV7 H8 H8 H 0 1 N N N Y Y N -11.391 -14.230 -15.569 -0.812 2.856 0.112 H8 ZV7 18
ZV7 H9 H9 H 0 1 N Y N Y Y N -11.403 -13.230 -16.860 0.408 2.336 1.116 H9 ZV7 19
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
ZV7 CL1 C30 SING N N 1
ZV7 C30 C29 SING N N 2
ZV7 C29 O7 DOUB N N 3
ZV7 C29 N4 SING N N 4
ZV7 C27 C26 SING N N 5
ZV7 C27 C28 SING N N 6
ZV7 N2 N4 SING N N 7
ZV7 N4 C26 SING N N 8
ZV7 C28 O6 DOUB N N 9
ZV7 C26 H1 SING N N 10
ZV7 C26 H2 SING N N 11
ZV7 C28 H3 SING N N 12
ZV7 C27 H4 SING N N 13
ZV7 C27 H5 SING N N 14
ZV7 C30 H6 SING N N 15
ZV7 C30 H7 SING N N 16
ZV7 N2 H8 SING N N 17
ZV7 N2 H9 SING N N 18
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
ZV7 SMILES ACDLabs 12.01 'ClCC(=O)N(N)CCC=O'
ZV7 InChI InChI 1.06 'InChI=1S/C5H9ClN2O2/c6-4-5(10)8(7)2-1-3-9/h3H,1-2,4,7H2'
ZV7 InChIKey InChI 1.06 QFHNLZAUZFBCAM-UHFFFAOYSA-N
ZV7 SMILES_CANONICAL CACTVS 3.385 'NN(CCC=O)C(=O)CCl'
ZV7 SMILES CACTVS 3.385 'NN(CCC=O)C(=O)CCl'
ZV7 SMILES_CANONICAL 'OpenEye OEToolkits' 2.0.7 'C(CN(C(=O)CCl)N)C=O'
ZV7 SMILES 'OpenEye OEToolkits' 2.0.7 'C(CN(C(=O)CCl)N)C=O'
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
ZV7 'SYSTEMATIC NAME' ACDLabs 12.01 '2-chloro-N-(3-oxopropyl)acetohydrazide'
ZV7 'SYSTEMATIC NAME' 'OpenEye OEToolkits' 2.0.7 '2-chloranyl-~{N}-(3-oxidanylidenepropyl)ethanehydrazide'
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
ZV7 'Create component' 2023-04-06 RCSB
ZV7 'Initial release' 2024-04-03 RCSB
ZV7 'Modify backbone' 2024-09-25 PDBE
ZV7 'Modify PCM' 2024-09-27 PDBE
#
_pdbx_chem_comp_pcm.pcm_id 1
_pdbx_chem_comp_pcm.comp_id ZV7
_pdbx_chem_comp_pcm.modified_residue_id ?
_pdbx_chem_comp_pcm.type None
_pdbx_chem_comp_pcm.category 'Non-standard residue'
_pdbx_chem_comp_pcm.position 'Amino-acid side chain and backbone'
_pdbx_chem_comp_pcm.polypeptide_position 'Any position'
_pdbx_chem_comp_pcm.comp_id_linking_atom ?
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom ?
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ?
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ?
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.09.6 'Core functionality.'
pdbeccdutils 0.8.6 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
ZV7 C26 C -0.909 -0.376 1
ZV7 C28 C -3.507 -0.378 2
ZV7 C27 C -2.209 0.373 3
ZV7 C29 C 1.689 -0.374 4
ZV7 C30 C 2.987 0.377 5
ZV7 N2 N 0.388 1.875 6
ZV7 N4 N 0.389 0.375 7
ZV7 O6 O -4.807 0.371 8
ZV7 O7 O 1.690 -1.874 9
ZV7 CL1 Cl 4.287 -0.372 10
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
ZV7 CL1 C30 SINGLE NONE 1
ZV7 C30 C29 SINGLE NONE 2
ZV7 C29 O7 DOUBLE NONE 3
ZV7 C29 N4 SINGLE NONE 4
ZV7 C27 C26 SINGLE NONE 5
ZV7 C27 C28 SINGLE NONE 6
ZV7 N2 N4 SINGLE NONE 7
ZV7 N4 C26 SINGLE NONE 8
ZV7 C28 O6 DOUBLE NONE 9
#
_pdbe_chem_comp_substructure.comp_id ZV7
_pdbe_chem_comp_substructure.substructure_name amide
_pdbe_chem_comp_substructure.id F1
_pdbe_chem_comp_substructure.substructure_type fragment
_pdbe_chem_comp_substructure.substructure_smiles CC(N)=O
_pdbe_chem_comp_substructure.substructure_inchis InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4)
_pdbe_chem_comp_substructure.substructure_inchikeys DLFVBJFMPXGRIB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
ZV7 N4 F1 1
ZV7 C29 F1 1
ZV7 O7 F1 1
ZV7 C30 F1 1
#
_pdbe_chem_comp_rdkit_properties.comp_id ZV7
_pdbe_chem_comp_rdkit_properties.exactmw 164.035
_pdbe_chem_comp_rdkit_properties.amw 164.592
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 4
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 2
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 5
_pdbe_chem_comp_rdkit_properties.NumHBD 1
_pdbe_chem_comp_rdkit_properties.NumHBA 3
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 10
_pdbe_chem_comp_rdkit_properties.NumAtoms 19
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 5
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 1
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.600
_pdbe_chem_comp_rdkit_properties.NumRings 0
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 76.656
_pdbe_chem_comp_rdkit_properties.tpsa 63.400
_pdbe_chem_comp_rdkit_properties.CrippenClogP -0.483
_pdbe_chem_comp_rdkit_properties.CrippenMR 37.301
_pdbe_chem_comp_rdkit_properties.chi0v 5.345
_pdbe_chem_comp_rdkit_properties.chi1v 2.372
_pdbe_chem_comp_rdkit_properties.chi2v 0.648
_pdbe_chem_comp_rdkit_properties.chi3v 0.648
_pdbe_chem_comp_rdkit_properties.chi4v 0.247
_pdbe_chem_comp_rdkit_properties.chi0n 13.589
_pdbe_chem_comp_rdkit_properties.chi1n 6.389
_pdbe_chem_comp_rdkit_properties.chi2n 0.486
_pdbe_chem_comp_rdkit_properties.chi3n 0.486
_pdbe_chem_comp_rdkit_properties.chi4n 0.167
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -0.610
_pdbe_chem_comp_rdkit_properties.kappa1 2.186
_pdbe_chem_comp_rdkit_properties.kappa2 5.197
_pdbe_chem_comp_rdkit_properties.kappa3 3.422
_pdbe_chem_comp_rdkit_properties.Phi 1.136
#
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
ZV7 C26 0.545 0.456 -0.517 ETKDGv3 1
ZV7 C28 2.683 0.922 0.687 ETKDGv3 2
ZV7 C27 1.583 -0.074 0.476 ETKDGv3 3
ZV7 C29 -1.707 -0.501 0.210 ETKDGv3 4
ZV7 C30 -1.918 0.579 1.239 ETKDGv3 5
ZV7 N2 -0.447 -1.469 -1.679 ETKDGv3 6
ZV7 N4 -0.554 -0.502 -0.663 ETKDGv3 7
ZV7 O6 3.433 1.219 -0.230 ETKDGv3 8
ZV7 O7 -2.586 -1.395 0.067 ETKDGv3 9
ZV7 CL1 -3.232 0.177 2.380 ETKDGv3 10
ZV7 H1 0.161 1.449 -0.197 ETKDGv3 11
ZV7 H2 1.033 0.605 -1.505 ETKDGv3 12
ZV7 H3 2.825 1.374 1.663 ETKDGv3 13
ZV7 H4 1.099 -0.286 1.453 ETKDGv3 14
ZV7 H5 2.017 -1.023 0.094 ETKDGv3 15
ZV7 H6 -2.176 1.528 0.724 ETKDGv3 16
ZV7 H7 -0.996 0.731 1.833 ETKDGv3 17
ZV7 H8 -0.478 -2.413 -1.229 ETKDGv3 18
ZV7 H9 -1.283 -1.376 -2.300 ETKDGv3 19
#