data_ZY4
#
_chem_comp.id ZY4
_chem_comp.name
"N-[(1S)-1-BENZYL-2,2-DIHYDROXY-3-(TETRAHYDRO-2H-PYRAN-4-YLAMINO)PROPYL]-6-ETHYL-1-METHYL-1,3,4,6-TETRAHYDRO[1,2]THIAZEPINO[5,4,3-CD]INDOLE-8-CARBOXAMIDE 2,2-DIOXIDE"
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C29 H38 N4 O6 S"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2009-04-02
_chem_comp.pdbx_modified_date 2011-06-04
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 570.700
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code ZY4
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 2WF4
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site EBI
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
ZY4 C1 C1 C 0 1 N N N N N N 30.564 1.488 34.270 0.128 0.614 0.157 C1 ZY4 1
ZY4 N2 N2 N 0 1 N N N N N N 29.331 1.583 33.716 -0.959 -0.109 -0.176 N2 ZY4 2
ZY4 C3 C3 C 0 1 N N S N N N 29.062 2.457 32.559 -2.299 0.457 -0.001 C3 ZY4 3
ZY4 C4 C4 C 0 1 N N N N N N 28.193 3.647 33.036 -3.314 -0.675 0.162 C4 ZY4 4
ZY4 C5 C5 C 0 1 N N N N N N 28.338 1.647 31.447 -2.662 1.296 -1.227 C5 ZY4 5
ZY4 C6 C6 C 0 1 N N N N N N 29.024 4.610 33.873 -4.692 -0.085 0.469 C6 ZY4 6
ZY4 O7 O7 O 0 1 N N N N N N 31.450 2.337 34.070 -0.003 1.737 0.604 O7 ZY4 7
ZY4 C8 C8 C 0 1 Y N N N N N 30.772 0.318 35.112 1.477 0.041 -0.014 C8 ZY4 8
ZY4 C9 C9 C 0 1 Y N N N N N 31.380 0.479 36.377 2.604 0.805 0.338 C9 ZY4 9
ZY4 C10 C10 C 0 1 Y N N N N N 31.619 -0.639 37.243 3.854 0.262 0.215 C10 ZY4 10
ZY4 C11 C11 C 0 1 Y N N N N N 31.226 -1.938 36.800 3.988 -1.081 -0.213 C11 ZY4 11
ZY4 C12 C12 C 0 1 Y N N N N N 30.597 -2.100 35.495 2.877 -1.813 -0.649 C12 ZY4 12
ZY4 C13 C13 C 0 1 Y N N N N N 30.385 -0.978 34.680 1.615 -1.252 -0.516 C13 ZY4 13
ZY4 C14 C14 C 0 1 Y N N N N N 29.044 0.335 31.118 -1.736 2.482 -1.317 C14 ZY4 14
ZY4 C15 C15 C 0 1 Y N N N N N 28.309 -0.879 31.100 -0.552 2.383 -2.023 C15 ZY4 15
ZY4 C16 C16 C 0 1 Y N N N N N 28.950 -2.112 30.796 0.297 3.470 -2.105 C16 ZY4 16
ZY4 C17 C17 C 0 1 Y N N N N N 30.337 -2.144 30.508 -0.038 4.657 -1.482 C17 ZY4 17
ZY4 C18 C18 C 0 1 Y N N N N N 31.087 -0.943 30.521 -1.222 4.757 -0.776 C18 ZY4 18
ZY4 C19 C19 C 0 1 Y N N N N N 30.449 0.290 30.823 -2.074 3.671 -0.697 C19 ZY4 19
ZY4 N20 N20 N 0 1 N N N N N N 28.320 5.779 34.379 -5.667 -1.173 0.625 N20 ZY4 20
ZY4 O21 O21 O 0 1 N N N N N N 27.753 4.399 31.935 -3.380 -1.433 -1.048 O21 ZY4 21
ZY4 C39 C39 C 0 1 N N N N N N 29.107 6.768 35.128 -7.004 -0.642 0.922 C39 ZY4 22
ZY4 C42 C42 C 0 1 N N N N N N 29.768 6.163 36.384 -7.821 -1.700 1.669 C42 ZY4 23
ZY4 C43 C43 C 0 1 N N N N N N 30.549 7.226 37.189 -9.238 -1.168 1.905 C43 ZY4 24
ZY4 O1 O1 O 0 1 N N N N N N 29.678 8.326 37.494 -9.834 -0.833 0.650 O1 ZY4 25
ZY4 C45 C45 C 0 1 N N N N N N 29.073 8.983 36.368 -9.139 0.185 -0.073 C45 ZY4 26
ZY4 C46 C46 C 0 1 N N N N N N 28.232 7.963 35.574 -7.719 -0.292 -0.387 C46 ZY4 27
ZY4 C7 C7 C 0 1 Y N N N N N 31.299 -3.295 37.380 5.151 -1.920 -0.335 C7 ZY4 28
ZY4 C57 C57 C 0 1 Y N N N N N 30.734 -4.141 36.426 4.735 -3.049 -0.947 C57 ZY4 29
ZY4 N1 N1 N 0 1 Y N N N N N 30.324 -3.463 35.329 3.380 -2.992 -1.155 N1 ZY4 30
ZY4 N59 N59 N 0 1 N N N N N N 32.234 -0.388 38.467 5.044 0.959 0.439 N59 ZY4 31
ZY4 S60 S60 S 0 1 N N N N N N 31.767 -1.219 39.804 6.008 0.589 1.700 S60 ZY4 32
ZY4 C61 C61 C 0 1 N N N N N N 32.510 -2.829 39.694 6.441 -1.164 1.654 C61 ZY4 33
ZY4 C68 C68 C 0 1 N N N N N N 29.680 -4.071 34.138 2.586 -4.030 -1.817 C68 ZY4 34
ZY4 C69 C69 C 0 1 N N N N N N 28.146 -3.923 34.098 2.427 -3.684 -3.299 C69 ZY4 35
ZY4 O79 O79 O 0 1 N N N N N N 30.333 -1.354 39.762 5.185 0.850 2.829 O79 ZY4 36
ZY4 O80 O80 O 0 1 N N N N N N 32.332 -0.551 40.932 7.168 1.376 1.468 O80 ZY4 37
ZY4 C20 C20 C 0 1 N N N N N N 31.841 -3.804 38.722 6.548 -1.685 0.208 C20 ZY4 38
ZY4 O2 O2 O 0 1 N N N N N N 27.070 3.155 33.722 -2.911 -1.527 1.236 O2 ZY4 39
ZY4 C2 C2 C 0 1 N N N N N N 33.338 0.583 38.560 5.432 2.036 -0.475 C2 ZY4 40
ZY4 H2 H2 H 0 1 N N N N N N 28.582 1.045 34.103 -0.855 -1.006 -0.533 H2 ZY4 41
ZY4 H3 H3 H 0 1 N N N N N N 30.003 2.842 32.139 -2.313 1.088 0.888 H3 ZY4 42
ZY4 H51C H51C H 0 0 N N N N N N 27.320 1.416 31.793 -2.562 0.688 -2.126 H51C ZY4 43
ZY4 H52C H52C H 0 0 N N N N N N 28.335 2.262 30.535 -3.691 1.645 -1.137 H52C ZY4 44
ZY4 H61C H61C H 0 0 N N N N N N 29.400 4.050 34.742 -4.642 0.493 1.392 H61C ZY4 45
ZY4 H62C H62C H 0 0 N N N N N N 29.807 4.995 33.203 -5.000 0.565 -0.350 H62C ZY4 46
ZY4 HA HA H 0 1 N N N N N N 27.283 3.044 34.641 -2.845 -1.079 2.090 HA ZY4 47
ZY4 HB HB H 0 1 N N N N N N 27.654 5.308 32.191 -3.649 -0.918 -1.821 HB ZY4 48
ZY4 H20 H20 H 0 1 N N N N N N 27.935 6.253 33.587 -5.686 -1.762 -0.194 H20 ZY4 49
ZY4 H9 H9 H 0 1 N N N N N N 31.672 1.468 36.700 2.484 1.815 0.701 H9 ZY4 50
ZY4 H13 H13 H 0 1 N N N N N N 29.922 -1.102 33.712 0.741 -1.815 -0.807 H13 ZY4 51
ZY4 H15 H15 H 0 1 N N N N N N 27.252 -0.867 31.319 -0.291 1.455 -2.511 H15 ZY4 52
ZY4 H19 H19 H 0 1 N N N N N N 31.026 1.203 30.831 -3.001 3.750 -0.149 H19 ZY4 53
ZY4 H16 H16 H 0 1 N N N N N N 28.377 -3.027 30.785 1.222 3.392 -2.657 H16 ZY4 54
ZY4 H17 H17 H 0 1 N N N N N N 30.821 -3.082 30.279 0.626 5.507 -1.545 H17 ZY4 55
ZY4 H18 H18 H 0 1 N N N N N N 32.144 -0.964 30.301 -1.484 5.685 -0.288 H18 ZY4 56
ZY4 H39 H39 H 0 1 N N N N N N 29.892 7.109 34.437 -6.913 0.252 1.539 H39 ZY4 57
ZY4 H421 H421 H 0 0 N N N N N N 28.982 5.740 37.027 -7.869 -2.612 1.073 H421 ZY4 58
ZY4 H422 H422 H 0 0 N N N N N N 30.478 5.388 36.059 -7.349 -1.915 2.628 H422 ZY4 59
ZY4 H461 H461 H 0 0 N N N N N N 27.814 8.456 34.684 -7.173 0.500 -0.900 H461 ZY4 60
ZY4 H462 H462 H 0 0 N N N N N N 27.423 7.590 36.219 -7.765 -1.175 -1.025 H462 ZY4 61
ZY4 H431 H431 H 0 0 N N N N N N 30.919 6.780 38.124 -9.836 -1.934 2.398 H431 ZY4 62
ZY4 H432 H432 H 0 0 N N N N N N 31.401 7.586 36.594 -9.192 -0.280 2.534 H432 ZY4 63
ZY4 H451 H451 H 0 0 N N N N N N 28.424 9.798 36.723 -9.667 0.395 -1.003 H451 ZY4 64
ZY4 H452 H452 H 0 0 N N N N N N 29.858 9.398 35.719 -9.092 1.092 0.531 H452 ZY4 65
ZY4 H57 H57 H 0 1 N N N N N N 30.635 -5.210 36.548 5.372 -3.873 -1.230 H57 ZY4 66
ZY4 H201 H201 H 0 0 N N N N N N 30.979 -4.228 39.259 7.105 -2.622 0.199 H201 ZY4 67
ZY4 H202 H202 H 0 0 N N N N N N 32.656 -4.484 38.433 7.060 -0.948 -0.409 H202 ZY4 68
ZY4 H681 H681 H 0 0 N N N N N N 30.090 -3.578 33.244 3.092 -4.991 -1.721 H681 ZY4 69
ZY4 H682 H682 H 0 0 N N N N N N 29.893 -5.149 34.179 1.603 -4.089 -1.350 H682 ZY4 70
ZY4 H21C H21C H 0 0 N N N N N N 33.700 0.825 37.550 5.023 2.981 -0.117 H21C ZY4 71
ZY4 H22C H22C H 0 0 N N N N N N 32.979 1.500 39.050 6.520 2.104 -0.516 H22C ZY4 72
ZY4 H23C H23C H 0 0 N N N N N N 34.159 0.149 39.149 5.044 1.826 -1.471 H23C ZY4 73
ZY4 H611 H611 H 0 0 N N N N N N 33.549 -2.691 39.360 7.398 -1.307 2.155 H611 ZY4 74
ZY4 H612 H612 H 0 0 N N N N N N 32.409 -3.279 40.693 5.676 -1.733 2.182 H612 ZY4 75
ZY4 H691 H691 H 0 0 N N N N N N 27.754 -3.888 35.125 1.921 -2.723 -3.395 H691 ZY4 76
ZY4 H692 H692 H 0 0 N N N N N N 27.881 -2.994 33.572 3.410 -3.625 -3.766 H692 ZY4 77
ZY4 H693 H693 H 0 0 N N N N N N 27.709 -4.782 33.568 1.836 -4.456 -3.791 H693 ZY4 78
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
ZY4 C1 N2 SING N N 1
ZY4 C1 O7 DOUB N N 2
ZY4 C1 C8 SING N N 3
ZY4 N2 C3 SING N N 4
ZY4 C3 C4 SING N N 5
ZY4 C3 C5 SING N N 6
ZY4 C4 C6 SING N N 7
ZY4 C4 O21 SING N N 8
ZY4 C4 O2 SING N N 9
ZY4 C5 C14 SING N N 10
ZY4 C6 N20 SING N N 11
ZY4 C8 C9 SING Y N 12
ZY4 C8 C13 DOUB Y N 13
ZY4 C9 C10 DOUB Y N 14
ZY4 C10 C11 SING Y N 15
ZY4 C10 N59 SING N N 16
ZY4 C11 C12 DOUB Y N 17
ZY4 C11 C7 SING Y N 18
ZY4 C12 C13 SING Y N 19
ZY4 C12 N1 SING Y N 20
ZY4 C14 C15 SING Y N 21
ZY4 C14 C19 DOUB Y N 22
ZY4 C15 C16 DOUB Y N 23
ZY4 C16 C17 SING Y N 24
ZY4 C17 C18 DOUB Y N 25
ZY4 C18 C19 SING Y N 26
ZY4 N20 C39 SING N N 27
ZY4 C39 C42 SING N N 28
ZY4 C39 C46 SING N N 29
ZY4 C42 C43 SING N N 30
ZY4 C43 O1 SING N N 31
ZY4 O1 C45 SING N N 32
ZY4 C45 C46 SING N N 33
ZY4 C7 C57 DOUB Y N 34
ZY4 C7 C20 SING N N 35
ZY4 C57 N1 SING Y N 36
ZY4 N1 C68 SING N N 37
ZY4 N59 S60 SING N N 38
ZY4 N59 C2 SING N N 39
ZY4 S60 C61 SING N N 40
ZY4 S60 O79 DOUB N N 41
ZY4 S60 O80 DOUB N N 42
ZY4 C61 C20 SING N N 43
ZY4 C68 C69 SING N N 44
ZY4 N2 H2 SING N N 45
ZY4 C3 H3 SING N N 46
ZY4 C5 H51C SING N N 47
ZY4 C5 H52C SING N N 48
ZY4 C6 H61C SING N N 49
ZY4 C6 H62C SING N N 50
ZY4 O2 HA SING N N 51
ZY4 O21 HB SING N N 52
ZY4 N20 H20 SING N N 53
ZY4 C9 H9 SING N N 54
ZY4 C13 H13 SING N N 55
ZY4 C15 H15 SING N N 56
ZY4 C19 H19 SING N N 57
ZY4 C16 H16 SING N N 58
ZY4 C17 H17 SING N N 59
ZY4 C18 H18 SING N N 60
ZY4 C39 H39 SING N N 61
ZY4 C42 H421 SING N N 62
ZY4 C42 H422 SING N N 63
ZY4 C46 H461 SING N N 64
ZY4 C46 H462 SING N N 65
ZY4 C43 H431 SING N N 66
ZY4 C43 H432 SING N N 67
ZY4 C45 H451 SING N N 68
ZY4 C45 H452 SING N N 69
ZY4 C57 H57 SING N N 70
ZY4 C20 H201 SING N N 71
ZY4 C20 H202 SING N N 72
ZY4 C68 H681 SING N N 73
ZY4 C68 H682 SING N N 74
ZY4 C2 H21C SING N N 75
ZY4 C2 H22C SING N N 76
ZY4 C2 H23C SING N N 77
ZY4 C61 H611 SING N N 78
ZY4 C61 H612 SING N N 79
ZY4 C69 H691 SING N N 80
ZY4 C69 H692 SING N N 81
ZY4 C69 H693 SING N N 82
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
ZY4 SMILES ACDLabs 10.04 O=C(NC(Cc1ccccc1)C(O)(O)CNC2CCOCC2)c5cc3n(cc4c3c(N(C)S(=O)(=O)CC4)c5)CC
ZY4 SMILES_CANONICAL CACTVS 3.352 CCn1cc2CC[S](=O)(=O)N(C)c3cc(cc1c23)C(=O)N[C@@H](Cc4ccccc4)C(O)(O)CNC5CCOCC5
ZY4 SMILES CACTVS 3.352 CCn1cc2CC[S](=O)(=O)N(C)c3cc(cc1c23)C(=O)N[CH](Cc4ccccc4)C(O)(O)CNC5CCOCC5
ZY4 SMILES_CANONICAL "OpenEye OEToolkits" 1.6.1 CCn1cc2c3c1cc(cc3N(S(=O)(=O)CC2)C)C(=O)N[C@@H](Cc4ccccc4)C(CNC5CCOCC5)(O)O
ZY4 SMILES "OpenEye OEToolkits" 1.6.1 CCn1cc2c3c1cc(cc3N(S(=O)(=O)CC2)C)C(=O)NC(Cc4ccccc4)C(CNC5CCOCC5)(O)O
ZY4 InChI InChI 1.03 InChI=1S/C29H38N4O6S/c1-3-33-18-21-11-14-40(37,38)32(2)24-16-22(17-25(33)27(21)24)28(34)31-26(15-20-7-5-4-6-8-20)29(35,36)19-30-23-9-12-39-13-10-23/h4-8,16-18,23,26,30,35-36H,3,9-15,19H2,1-2H3,(H,31,34)/t26-/m0/s1
ZY4 InChIKey InChI 1.03 LMEDJLLRHRUTJN-SANMLTNESA-N
#
_pdbx_chem_comp_identifier.comp_id ZY4
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program ACDLabs
_pdbx_chem_comp_identifier.program_version 10.04
_pdbx_chem_comp_identifier.identifier
"N-[(1S)-1-benzyl-2,2-dihydroxy-3-(tetrahydro-2H-pyran-4-ylamino)propyl]-6-ethyl-1-methyl-1,3,4,6-tetrahydro[1,2]thiazepino[5,4,3-cd]indole-8-carboxamide 2,2-dioxide"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
ZY4 'Create component' 2009-04-02 EBI
ZY4 'Modify aromatic_flag' 2011-06-04 RCSB
ZY4 'Modify descriptor' 2011-06-04 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
ZY4 C1 C 10.567 1.540 1
ZY4 N2 N 10.461 0.043 2
ZY4 C3 C 11.704 -0.797 3
ZY4 C4 C 11.597 -2.293 4
ZY4 C5 C 13.053 -0.141 5
ZY4 C6 C 11.491 -3.789 6
ZY4 O7 O 11.916 2.196 7
ZY4 C8 C 9.325 2.380 8
ZY4 C9 C 9.429 3.939 9
ZY4 C10 C 8.125 4.799 10
ZY4 C11 C 6.774 4.148 11
ZY4 C12 C 6.633 2.592 12
ZY4 C13 C 7.917 1.702 13
ZY4 C14 C 14.295 -0.981 14
ZY4 C15 C 14.189 -2.477 15
ZY4 C16 C 15.431 -3.317 16
ZY4 C17 C 16.780 -2.661 17
ZY4 C18 C 16.887 -1.165 18
ZY4 C19 C 15.644 -0.325 19
ZY4 N20 N 10.142 -4.445 20
ZY4 O21 O 10.101 -2.187 21
ZY4 C39 C 10.036 -5.941 22
ZY4 C42 C 11.278 -6.782 23
ZY4 C43 C 11.172 -8.278 24
ZY4 O1 O 9.823 -8.934 25
ZY4 C45 C 8.580 -8.094 26
ZY4 C46 C 8.687 -6.598 27
ZY4 C7 C 5.422 4.799 28
ZY4 C57 C 4.452 3.677 29
ZY4 N1 N 5.165 2.376 30
ZY4 N59 N 8.459 6.261 31
ZY4 S60 S 7.524 7.434 32
ZY4 C61 C 6.024 7.434 33
ZY4 C68 C 4.497 1.033 34
ZY4 C69 C 3.000 0.940 35
ZY4 O79 O 7.524 8.934 36
ZY4 O80 O 8.696 8.369 37
ZY4 C20 C 5.088 6.261 38
ZY4 O2 O 13.094 -2.399 39
ZY4 C2 C 9.921 6.595 40
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
ZY4 C1 N2 SINGLE NONE 1
ZY4 C1 O7 DOUBLE NONE 2
ZY4 C1 C8 SINGLE NONE 3
ZY4 N2 C3 SINGLE NONE 4
ZY4 C3 C4 SINGLE NONE 5
ZY4 C3 C5 SINGLE BEGINWEDGE 6
ZY4 C4 C6 SINGLE NONE 7
ZY4 C4 O21 SINGLE NONE 8
ZY4 C4 O2 SINGLE NONE 9
ZY4 C5 C14 SINGLE NONE 10
ZY4 C6 N20 SINGLE NONE 11
ZY4 C8 C9 DOUBLE NONE 12
ZY4 C8 C13 SINGLE NONE 13
ZY4 C9 C10 SINGLE NONE 14
ZY4 C10 C11 DOUBLE NONE 15
ZY4 C10 N59 SINGLE NONE 16
ZY4 C11 C12 SINGLE NONE 17
ZY4 C11 C7 SINGLE NONE 18
ZY4 C12 C13 DOUBLE NONE 19
ZY4 C12 N1 SINGLE NONE 20
ZY4 C14 C15 DOUBLE NONE 21
ZY4 C14 C19 SINGLE NONE 22
ZY4 C15 C16 SINGLE NONE 23
ZY4 C16 C17 DOUBLE NONE 24
ZY4 C17 C18 SINGLE NONE 25
ZY4 C18 C19 DOUBLE NONE 26
ZY4 N20 C39 SINGLE NONE 27
ZY4 C39 C42 SINGLE NONE 28
ZY4 C39 C46 SINGLE NONE 29
ZY4 C42 C43 SINGLE NONE 30
ZY4 C43 O1 SINGLE NONE 31
ZY4 O1 C45 SINGLE NONE 32
ZY4 C45 C46 SINGLE NONE 33
ZY4 C7 C57 DOUBLE NONE 34
ZY4 C7 C20 SINGLE NONE 35
ZY4 C57 N1 SINGLE NONE 36
ZY4 N1 C68 SINGLE NONE 37
ZY4 N59 S60 SINGLE NONE 38
ZY4 N59 C2 SINGLE NONE 39
ZY4 S60 C61 SINGLE NONE 40
ZY4 S60 O79 DOUBLE NONE 41
ZY4 S60 O80 DOUBLE NONE 42
ZY4 C61 C20 SINGLE NONE 43
ZY4 C68 C69 SINGLE NONE 44
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
ZY4 MurckoScaffold S1 scaffold 'O=C(N[C@H](CCNC1CCOCC1)Cc1ccccc1)c1cc2c3c(c[nH]c3c1)CCS(=O)(=O)N2' InChI=1S/C26H32N4O4S/c31-26(20-15-23-25-19(17-28-23)9-13-35(32,33)30-24(25)16-20)29-22(14-18-4-2-1-3-5-18)6-10-27-21-7-11-34-12-8-21/h1-5,15-17,21-22,27-28,30H,6-14H2,(H,29,31)/t22-/m1/s1 WFXCZTQEJRUFEW-JOCHJYFZSA-N
ZY4 amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
ZY4 indole F2 fragment 'c1ccc2[nH]ccc2c1' InChI=1S/C8H7N/c1-2-4-8-7(3-1)5-6-9-8/h1-6,9H SIKJAQJRHWYJAI-UHFFFAOYSA-N
ZY4 phenyl F3 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
ZY4 pyrrole F4 fragment 'c1cc[nH]c1' InChI=1S/C4H5N/c1-2-4-5-3-1/h1-5H KAESVJOAVNADME-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
ZY4 C1 S1 1
ZY4 N2 S1 1
ZY4 C3 S1 1
ZY4 C4 S1 1
ZY4 C5 S1 1
ZY4 C6 S1 1
ZY4 O7 S1 1
ZY4 C8 S1 1
ZY4 C9 S1 1
ZY4 C10 S1 1
ZY4 C11 S1 1
ZY4 C12 S1 1
ZY4 C13 S1 1
ZY4 C14 S1 1
ZY4 C15 S1 1
ZY4 C16 S1 1
ZY4 C17 S1 1
ZY4 C18 S1 1
ZY4 C19 S1 1
ZY4 N20 S1 1
ZY4 C39 S1 1
ZY4 C42 S1 1
ZY4 C43 S1 1
ZY4 O1 S1 1
ZY4 C45 S1 1
ZY4 C46 S1 1
ZY4 C7 S1 1
ZY4 C57 S1 1
ZY4 N1 S1 1
ZY4 N59 S1 1
ZY4 S60 S1 1
ZY4 C61 S1 1
ZY4 O79 S1 1
ZY4 O80 S1 1
ZY4 C20 S1 1
ZY4 N2 F1 1
ZY4 C1 F1 1
ZY4 O7 F1 1
ZY4 C8 F1 1
ZY4 C12 F2 1
ZY4 C11 F2 1
ZY4 C7 F2 1
ZY4 C57 F2 1
ZY4 N1 F2 1
ZY4 C10 F2 1
ZY4 C9 F2 1
ZY4 C8 F2 1
ZY4 C13 F2 1
ZY4 C8 F3 1
ZY4 C9 F3 1
ZY4 C10 F3 1
ZY4 C11 F3 1
ZY4 C12 F3 1
ZY4 C13 F3 1
ZY4 C14 F3 2
ZY4 C15 F3 2
ZY4 C16 F3 2
ZY4 C17 F3 2
ZY4 C18 F3 2
ZY4 C19 F3 2
ZY4 C12 F4 1
ZY4 C11 F4 1
ZY4 C7 F4 1
ZY4 C57 F4 1
ZY4 N1 F4 1
#
_pdbe_chem_comp_rdkit_properties.comp_id ZY4
_pdbe_chem_comp_rdkit_properties.exactmw 570.251
_pdbe_chem_comp_rdkit_properties.amw 570.712
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 10
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 4
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 13
_pdbe_chem_comp_rdkit_properties.NumHBD 4
_pdbe_chem_comp_rdkit_properties.NumHBA 8
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 40
_pdbe_chem_comp_rdkit_properties.NumAtoms 78
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 11
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 1
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.483
_pdbe_chem_comp_rdkit_properties.NumRings 5
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 3
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 3
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 1
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 288.214
_pdbe_chem_comp_rdkit_properties.tpsa 133.130
_pdbe_chem_comp_rdkit_properties.CrippenClogP 0.801
_pdbe_chem_comp_rdkit_properties.CrippenMR 150.090
_pdbe_chem_comp_rdkit_properties.chi0v 19.963
_pdbe_chem_comp_rdkit_properties.chi1v 11.693
_pdbe_chem_comp_rdkit_properties.chi2v 5.779
_pdbe_chem_comp_rdkit_properties.chi3v 5.779
_pdbe_chem_comp_rdkit_properties.chi4v 3.763
_pdbe_chem_comp_rdkit_properties.chi0n 57.147
_pdbe_chem_comp_rdkit_properties.chi1n 28.964
_pdbe_chem_comp_rdkit_properties.chi2n 4.756
_pdbe_chem_comp_rdkit_properties.chi3n 4.756
_pdbe_chem_comp_rdkit_properties.chi4n 3.063
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -2.960
_pdbe_chem_comp_rdkit_properties.kappa1 7.701
_pdbe_chem_comp_rdkit_properties.kappa2 11.497
_pdbe_chem_comp_rdkit_properties.kappa3 5.888
_pdbe_chem_comp_rdkit_properties.Phi 2.213
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
ZY4 UniChem PDBe ZY4
ZY4 UniChem ZINC ZINC000038998945
ZY4 UniChem PubChem 49867920
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
ZY4 C1 -0.244 0.213 -1.856 ETKDGv3 1
ZY4 N2 0.822 0.308 -0.897 ETKDGv3 2
ZY4 C3 2.135 0.878 -1.223 ETKDGv3 3
ZY4 C4 3.157 -0.243 -1.605 ETKDGv3 4
ZY4 C5 2.605 1.805 -0.078 ETKDGv3 5
ZY4 C6 3.316 -1.333 -0.512 ETKDGv3 6
ZY4 O7 0.005 0.345 -3.086 ETKDGv3 7
ZY4 C8 -1.634 -0.038 -1.412 ETKDGv3 8
ZY4 C9 -2.542 -0.585 -2.255 ETKDGv3 9
ZY4 C10 -3.953 -0.842 -1.825 ETKDGv3 10
ZY4 C11 -4.273 -0.556 -0.541 ETKDGv3 11
ZY4 C12 -3.315 0.099 0.328 ETKDGv3 12
ZY4 C13 -2.060 0.355 -0.044 ETKDGv3 13
ZY4 C14 1.678 2.984 0.077 ETKDGv3 14
ZY4 C15 1.776 4.047 -0.743 ETKDGv3 15
ZY4 C16 0.825 5.172 -0.619 ETKDGv3 16
ZY4 C17 -0.146 5.133 0.301 ETKDGv3 17
ZY4 C18 -0.265 3.967 1.200 ETKDGv3 18
ZY4 C19 0.600 2.951 1.098 ETKDGv3 19
ZY4 N20 3.987 -0.806 0.688 ETKDGv3 20
ZY4 O21 4.417 0.334 -1.860 ETKDGv3 21
ZY4 C39 5.411 -1.182 0.776 ETKDGv3 22
ZY4 C42 5.586 -2.662 1.201 ETKDGv3 23
ZY4 C43 6.876 -2.840 2.017 ETKDGv3 24
ZY4 O1 6.900 -2.089 3.225 ETKDGv3 25
ZY4 C45 6.196 -0.852 3.162 ETKDGv3 26
ZY4 C46 6.131 -0.234 1.756 ETKDGv3 27
ZY4 C7 -5.520 -0.624 0.266 ETKDGv3 28
ZY4 C57 -5.265 -0.046 1.451 ETKDGv3 29
ZY4 N1 -3.937 0.467 1.548 ETKDGv3 30
ZY4 N59 -4.920 -1.260 -2.805 ETKDGv3 31
ZY4 S60 -6.149 -2.406 -2.398 ETKDGv3 32
ZY4 C61 -7.281 -1.592 -1.306 ETKDGv3 33
ZY4 C68 -3.280 0.882 2.787 ETKDGv3 34
ZY4 C69 -2.626 -0.314 3.470 ETKDGv3 35
ZY4 O79 -5.526 -3.608 -1.744 ETKDGv3 36
ZY4 O80 -6.882 -2.854 -3.632 ETKDGv3 37
ZY4 C20 -6.715 -1.532 0.105 ETKDGv3 38
ZY4 O2 2.686 -0.867 -2.778 ETKDGv3 39
ZY4 C2 -4.872 -0.706 -4.160 ETKDGv3 40
ZY4 H2 0.669 -0.071 0.065 ETKDGv3 41
ZY4 H3 2.030 1.526 -2.123 ETKDGv3 42
ZY4 H51C 3.634 2.174 -0.277 ETKDGv3 43
ZY4 H52C 2.632 1.253 0.883 ETKDGv3 44
ZY4 H61C 3.873 -2.197 -0.937 ETKDGv3 45
ZY4 H62C 2.317 -1.737 -0.239 ETKDGv3 46
ZY4 HA 3.422 -1.427 -3.140 ETKDGv3 47
ZY4 HB 4.323 0.915 -2.660 ETKDGv3 48
ZY4 H20 3.477 -1.125 1.545 ETKDGv3 49
ZY4 H9 -2.244 -0.863 -3.257 ETKDGv3 50
ZY4 H13 -1.387 0.873 0.622 ETKDGv3 51
ZY4 H15 2.542 4.086 -1.508 ETKDGv3 52
ZY4 H19 0.506 2.100 1.762 ETKDGv3 53
ZY4 H16 0.913 6.025 -1.280 ETKDGv3 54
ZY4 H17 -0.845 5.954 0.389 ETKDGv3 55
ZY4 H18 -1.052 3.938 1.942 ETKDGv3 56
ZY4 H39 5.895 -1.042 -0.217 ETKDGv3 57
ZY4 H421 5.630 -3.311 0.300 ETKDGv3 58
ZY4 H422 4.732 -3.005 1.824 ETKDGv3 59
ZY4 H461 5.616 0.751 1.800 ETKDGv3 60
ZY4 H462 7.169 -0.049 1.403 ETKDGv3 61
ZY4 H431 7.755 -2.562 1.395 ETKDGv3 62
ZY4 H432 6.985 -3.915 2.273 ETKDGv3 63
ZY4 H451 5.166 -1.001 3.552 ETKDGv3 64
ZY4 H452 6.699 -0.131 3.839 ETKDGv3 65
ZY4 H57 -5.947 -0.067 2.293 ETKDGv3 66
ZY4 H201 -7.533 -1.173 0.769 ETKDGv3 67
ZY4 H202 -6.446 -2.551 0.454 ETKDGv3 68
ZY4 H681 -4.029 1.333 3.472 ETKDGv3 69
ZY4 H682 -2.513 1.654 2.567 ETKDGv3 70
ZY4 H21C -5.845 -0.829 -4.678 ETKDGv3 71
ZY4 H22C -4.651 0.382 -4.118 ETKDGv3 72
ZY4 H23C -4.086 -1.222 -4.749 ETKDGv3 73
ZY4 H611 -8.233 -2.164 -1.292 ETKDGv3 74
ZY4 H612 -7.491 -0.567 -1.682 ETKDGv3 75
ZY4 H691 -2.148 0.014 4.417 ETKDGv3 76
ZY4 H692 -3.390 -1.085 3.702 ETKDGv3 77
ZY4 H693 -1.849 -0.755 2.811 ETKDGv3 78
#