data_ZZ1
#
_chem_comp.id ZZ1
_chem_comp.name 4-METHYL-2H-CHROMEN-2-ONE
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C10 H8 O2"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms 4-METHYLUMBELLIFERYL
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2006-03-24
_chem_comp.pdbx_modified_date 2020-06-17
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 160.169
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code ZZ1
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details ?
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 2CIP
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
ZZ1 O8 O8 O 0 1 N N N N N N 11.439 37.677 12.114 3.058 -1.197 0.000 O8 ZZ1 1
ZZ1 C8 C8 C 0 1 Y N N N N N 12.169 38.016 13.094 1.967 -0.656 0.000 C8 ZZ1 2
ZZ1 O1 O1 O 0 1 Y N N N N N 13.339 37.303 13.305 0.861 -1.415 0.000 O1 ZZ1 3
ZZ1 C11 C11 C 0 1 Y N N N N N 14.220 37.578 14.319 -0.372 -0.864 0.000 C11 ZZ1 4
ZZ1 C10 C10 C 0 1 Y N N N N N 15.377 36.816 14.452 -1.508 -1.664 0.000 C10 ZZ1 5
ZZ1 C1 C1 C 0 1 Y N N N N N 16.327 37.122 15.447 -2.757 -1.080 0.000 C1 ZZ1 6
ZZ1 C2 C2 C 0 1 Y N N N N N 16.073 38.170 16.311 -2.893 0.301 -0.001 C2 ZZ1 7
ZZ1 C3 C3 C 0 1 Y N N N N N 14.910 38.941 16.174 -1.790 1.107 -0.001 C3 ZZ1 8
ZZ1 C4 C4 C 0 1 Y N N N N N 13.979 38.657 15.173 -0.514 0.535 0.005 C4 ZZ1 9
ZZ1 C5 C5 C 0 1 Y N N N N N 12.714 39.444 14.971 0.690 1.371 0.000 C5 ZZ1 10
ZZ1 C6 C6 C 0 1 N N N N N N 12.379 40.608 15.869 0.588 2.875 0.000 C6 ZZ1 11
ZZ1 C7 C7 C 0 1 Y N N N N N 11.853 39.092 13.936 1.899 0.754 0.000 C7 ZZ1 12
ZZ1 H10 H10 H 0 1 N N N N N N 15.552 35.965 13.773 -1.413 -2.739 0.000 H10 ZZ1 13
ZZ1 H1 H1 H 0 1 N N N N N N 17.257 36.535 15.535 -3.639 -1.704 0.000 H1 ZZ1 14
ZZ1 H2 H2 H 0 1 N N N N N N 16.791 38.402 17.115 -3.879 0.743 -0.001 H2 ZZ1 15
ZZ1 H3 H3 H 0 1 N N N N N N 14.729 39.782 16.865 -1.902 2.181 -0.002 H3 ZZ1 16
ZZ1 H6C1 1H6C H 0 0 N N N N N N 13.069 40.890 16.698 1.589 3.307 0.000 H6C1 ZZ1 17
ZZ1 H6C2 2H6C H 0 0 N N N N N N 11.363 40.442 16.297 0.051 3.202 -0.891 H6C2 ZZ1 18
ZZ1 H6C3 3H6C H 0 0 N N N N N N 12.208 41.507 15.232 0.051 3.202 0.889 H6C3 ZZ1 19
ZZ1 H7 H7 H 0 1 N N N N N N 10.921 39.660 13.778 2.806 1.340 0.000 H7 ZZ1 20
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
ZZ1 O8 C8 DOUB N N 1
ZZ1 C8 O1 SING Y N 2
ZZ1 C8 C7 SING Y N 3
ZZ1 O1 C11 SING Y N 4
ZZ1 C11 C10 DOUB Y N 5
ZZ1 C11 C4 SING Y N 6
ZZ1 C10 C1 SING Y N 7
ZZ1 C10 H10 SING N N 8
ZZ1 C1 C2 DOUB Y N 9
ZZ1 C1 H1 SING N N 10
ZZ1 C2 C3 SING Y N 11
ZZ1 C2 H2 SING N N 12
ZZ1 C3 C4 DOUB Y N 13
ZZ1 C3 H3 SING N N 14
ZZ1 C4 C5 SING Y N 15
ZZ1 C5 C6 SING N N 16
ZZ1 C5 C7 DOUB Y N 17
ZZ1 C6 H6C1 SING N N 18
ZZ1 C6 H6C2 SING N N 19
ZZ1 C6 H6C3 SING N N 20
ZZ1 C7 H7 SING N N 21
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
ZZ1 SMILES ACDLabs 10.04 O=C2Oc1ccccc1C(=C2)C
ZZ1 SMILES_CANONICAL CACTVS 3.341 CC1=CC(=O)Oc2ccccc12
ZZ1 SMILES CACTVS 3.341 CC1=CC(=O)Oc2ccccc12
ZZ1 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 CC1=CC(=O)Oc2c1cccc2
ZZ1 SMILES "OpenEye OEToolkits" 1.5.0 CC1=CC(=O)Oc2c1cccc2
ZZ1 InChI InChI 1.03 InChI=1S/C10H8O2/c1-7-6-10(11)12-9-5-3-2-4-8(7)9/h2-6H,1H3
ZZ1 InChIKey InChI 1.03 PSGQCCSGKGJLRL-UHFFFAOYSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
ZZ1 "SYSTEMATIC NAME" ACDLabs 10.04 4-methyl-2H-chromen-2-one
ZZ1 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 4-methylchromen-2-one
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
ZZ1 'Create component' 2006-03-24 RCSB
ZZ1 'Modify descriptor' 2011-06-04 RCSB
ZZ1 'Modify synonyms' 2020-06-05 PDBE
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id ZZ1
_pdbx_chem_comp_synonyms.name 4-METHYLUMBELLIFERYL
_pdbx_chem_comp_synonyms.provenance ?
_pdbx_chem_comp_synonyms.type ?
#
_pdbe_chem_comp_drugbank_details.comp_id ZZ1
_pdbe_chem_comp_drugbank_details.drugbank_id DB08785
_pdbe_chem_comp_drugbank_details.type 'small molecule'
_pdbe_chem_comp_drugbank_details.name 4-Methylcoumarin
_pdbe_chem_comp_drugbank_details.description ?
_pdbe_chem_comp_drugbank_details.cas_number 607-71-6
_pdbe_chem_comp_drugbank_details.mechanism_of_action ?
#
loop_
_pdbe_chem_comp_synonyms.comp_id
_pdbe_chem_comp_synonyms.name
_pdbe_chem_comp_synonyms.provenance
_pdbe_chem_comp_synonyms.type
ZZ1 4-METHYLUMBELLIFERYL wwPDB ?
ZZ1 4-Methyl-2H-1-benzopyran-2-one DrugBank ?
#
_pdbe_chem_comp_drugbank_classification.comp_id ZZ1
_pdbe_chem_comp_drugbank_classification.drugbank_id DB08785
_pdbe_chem_comp_drugbank_classification.parent 'Coumarins and derivatives'
_pdbe_chem_comp_drugbank_classification.kingdom 'Organic compounds'
_pdbe_chem_comp_drugbank_classification.class 'Coumarins and derivatives'
_pdbe_chem_comp_drugbank_classification.superclass 'Phenylpropanoids and polyketides'
_pdbe_chem_comp_drugbank_classification.description
'This compound belongs to the class of organic compounds known as coumarins and derivatives. These are polycyclic aromatic compounds containing a 1-benzopyran moiety with a ketone group at the C2 carbon atom (1-benzopyran-2-one).'
#
_pdbe_chem_comp_drugbank_targets.comp_id ZZ1
_pdbe_chem_comp_drugbank_targets.drugbank_id DB08785
_pdbe_chem_comp_drugbank_targets.name 'Endoglucanase H'
_pdbe_chem_comp_drugbank_targets.organism
'Clostridium thermocellum (strain ATCC 27405 / DSM 1237 / NBRC 103400 / NCIMB 10682 / NRRL B-4536 / VPI 7372)'
_pdbe_chem_comp_drugbank_targets.uniprot_id P16218
_pdbe_chem_comp_drugbank_targets.pharmacologically_active unknown
_pdbe_chem_comp_drugbank_targets.ordinal 1
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
ZZ1 O8 O 9.597 -2.224 1
ZZ1 C8 C 8.298 -1.474 2
ZZ1 O1 O 6.999 -2.224 3
ZZ1 C11 C 5.700 -1.474 4
ZZ1 C10 C 4.359 -2.276 5
ZZ1 C1 C 3.000 -1.505 6
ZZ1 C2 C 3.000 0.057 7
ZZ1 C3 C 4.359 0.828 8
ZZ1 C4 C 5.700 0.026 9
ZZ1 C5 C 6.999 0.776 10
ZZ1 C6 C 6.999 2.276 11
ZZ1 C7 C 8.298 0.026 12
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
ZZ1 O8 C8 DOUBLE NONE 1
ZZ1 C8 O1 SINGLE NONE 2
ZZ1 C8 C7 SINGLE NONE 3
ZZ1 O1 C11 SINGLE NONE 4
ZZ1 C11 C10 DOUBLE NONE 5
ZZ1 C11 C4 SINGLE NONE 6
ZZ1 C10 C1 SINGLE NONE 7
ZZ1 C1 C2 DOUBLE NONE 8
ZZ1 C2 C3 SINGLE NONE 9
ZZ1 C3 C4 DOUBLE NONE 10
ZZ1 C4 C5 SINGLE NONE 11
ZZ1 C5 C6 SINGLE NONE 12
ZZ1 C5 C7 DOUBLE NONE 13
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
ZZ1 MurckoScaffold S1 scaffold O=c1ccc2ccccc2o1 InChI=1S/C9H6O2/c10-9-6-5-7-3-1-2-4-8(7)11-9/h1-6H ZYGHJZDHTFUPRJ-UHFFFAOYSA-N
ZZ1 phenyl F1 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
ZZ1 O8 S1 1
ZZ1 C8 S1 1
ZZ1 O1 S1 1
ZZ1 C11 S1 1
ZZ1 C10 S1 1
ZZ1 C1 S1 1
ZZ1 C2 S1 1
ZZ1 C3 S1 1
ZZ1 C4 S1 1
ZZ1 C5 S1 1
ZZ1 C7 S1 1
ZZ1 C11 F1 1
ZZ1 C10 F1 1
ZZ1 C1 F1 1
ZZ1 C2 F1 1
ZZ1 C3 F1 1
ZZ1 C4 F1 1
#
_pdbe_chem_comp_rdkit_properties.comp_id ZZ1
_pdbe_chem_comp_rdkit_properties.exactmw 160.052
_pdbe_chem_comp_rdkit_properties.amw 160.172
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 2
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 0
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 1
_pdbe_chem_comp_rdkit_properties.NumHBD 0
_pdbe_chem_comp_rdkit_properties.NumHBA 2
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 12
_pdbe_chem_comp_rdkit_properties.NumAtoms 20
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 2
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.100
_pdbe_chem_comp_rdkit_properties.NumRings 2
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 80.684
_pdbe_chem_comp_rdkit_properties.tpsa 30.210
_pdbe_chem_comp_rdkit_properties.CrippenClogP 2.518
_pdbe_chem_comp_rdkit_properties.CrippenMR 44.857
_pdbe_chem_comp_rdkit_properties.chi0v 5.816
_pdbe_chem_comp_rdkit_properties.chi1v 3.112
_pdbe_chem_comp_rdkit_properties.chi2v 1.325
_pdbe_chem_comp_rdkit_properties.chi3v 1.325
_pdbe_chem_comp_rdkit_properties.chi4v 0.836
_pdbe_chem_comp_rdkit_properties.chi0n 13.816
_pdbe_chem_comp_rdkit_properties.chi1n 7.112
_pdbe_chem_comp_rdkit_properties.chi2n 1.325
_pdbe_chem_comp_rdkit_properties.chi3n 1.325
_pdbe_chem_comp_rdkit_properties.chi4n 0.836
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.570
_pdbe_chem_comp_rdkit_properties.kappa1 2.457
_pdbe_chem_comp_rdkit_properties.kappa2 2.483
_pdbe_chem_comp_rdkit_properties.kappa3 1.013
_pdbe_chem_comp_rdkit_properties.Phi 0.508
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
ZZ1 UniChem ChEMBL CHEMBL12279
ZZ1 UniChem DrugBank DB08785
ZZ1 UniChem PDBe ZZ1
ZZ1 UniChem 'Probes And Drugs' PD004533
ZZ1 UniChem ChemicalBook CB7931228
ZZ1 UniChem ZINC ZINC000000300858
ZZ1 UniChem eMolecules 730476
ZZ1 UniChem fdasrs 2YZ8R79U9H
ZZ1 UniChem SureChEMBL SCHEMBL66891
ZZ1 UniChem HMDB HMDB0246508
ZZ1 UniChem 'PubChem TPHARMA' 15462218
ZZ1 UniChem PubChem 11833
ZZ1 UniChem Mcule MCULE-1243494784
ZZ1 UniChem NMRShiftDB 70115469
ZZ1 UniChem ACTor 607-71-6
ZZ1 UniChem Nikkaji J48.498I
ZZ1 UniChem 'EPA CompTox Dashboard' DTXSID00209516
ZZ1 UniChem BRENDA 186464
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
ZZ1 O8 -1.894 3.370 -0.494 ETKDGv3 1
ZZ1 C8 -1.274 2.286 -0.335 ETKDGv3 2
ZZ1 O1 0.122 2.284 -0.315 ETKDGv3 3
ZZ1 C11 0.837 1.099 -0.140 ETKDGv3 4
ZZ1 C10 2.176 1.119 -0.124 ETKDGv3 5
ZZ1 C1 2.931 -0.136 0.060 ETKDGv3 6
ZZ1 C2 2.279 -1.294 0.212 ETKDGv3 7
ZZ1 C3 0.801 -1.323 0.195 ETKDGv3 8
ZZ1 C4 0.100 -0.183 0.027 ETKDGv3 9
ZZ1 C5 -1.392 -0.147 0.001 ETKDGv3 10
ZZ1 C6 -2.201 -1.408 0.164 ETKDGv3 11
ZZ1 C7 -2.025 1.027 -0.171 ETKDGv3 12
ZZ1 H10 2.710 2.053 -0.246 ETKDGv3 13
ZZ1 H1 4.013 -0.116 0.073 ETKDGv3 14
ZZ1 H2 2.833 -2.214 0.347 ETKDGv3 15
ZZ1 H3 0.308 -2.278 0.320 ETKDGv3 16
ZZ1 H6C1 -1.948 -2.122 -0.648 ETKDGv3 17
ZZ1 H6C2 -3.294 -1.214 0.122 ETKDGv3 18
ZZ1 H6C3 -1.974 -1.873 1.146 ETKDGv3 19
ZZ1 H7 -3.108 1.070 -0.192 ETKDGv3 20
#