spacer
spacer

PDBsum entry 5wdp

Go to PDB code: 
protein ligands metals links
Oncoprotein, hydrolase PDB id
5wdp

 

 

 

 

Loading ...

 
JSmol PyMol  
Contents
Protein chain
166 a.a.
Ligands
GNP
Metals
_MG ×2
_CA ×2
Waters ×114
PDB id:
5wdp
Name: Oncoprotein, hydrolase
Title: H-ras mutant l120a bound to gmp-pnp at 277k
Structure: Gtpase hras. Chain: a. Synonym: h-ras-1, ha-ras, transforming protein p21, c-h-ras, p21ras. Engineered: yes. Mutation: yes
Source: Homo sapiens. Human. Organism_taxid: 9606. Gene: hras, hras1. Expressed in: escherichia coli bl21(de3). Expression_system_taxid: 469008.
Resolution:
1.35Å     R-factor:   0.146     R-free:   0.154
Authors: J.C.Cofsky,P.Bandaru,C.L.Gee,J.Kuriyan
Key ref: P.Bandaru et al. (2017). Deconstruction of the ras switching cycle through sat mutagenesis.. Elife, 6, . PubMed id: 28686159
Date:
05-Jul-17     Release date:   19-Jul-17    
PROCHECK
Go to PROCHECK summary
 Headers
 References

Protein chain
Pfam   ArchSchema ?
P01112  (RASH_HUMAN) -  GTPase HRas from Homo sapiens
Seq:
Struc:
189 a.a.
166 a.a.*
Key:    PfamA domain  Secondary structure
* PDB and UniProt seqs differ at 1 residue position (black cross)

 Enzyme reactions 
   Enzyme class: E.C.3.6.5.2  - small monomeric GTPase.
[IntEnz]   [ExPASy]   [KEGG]   [BRENDA]
      Reaction: GTP + H2O = GDP + phosphate + H+
GTP
+ H2O
=
GDP
Bound ligand (Het Group name = GNP)
matches with 81.82% similarity
+ phosphate
+ H(+)
Molecule diagrams generated from .mol files obtained from the KEGG ftp site

 

 

spacer

spacer