Course at EMBL-EBI
Bioinformatics for Principal Investigators
This course has been designed to provide Principal Investigators (PI's) working in the life sciences with an introduction to the challenges of working with biological data as a research leader.
Starting with a look at where bioinformatics and data science fits into their research teams, the course will enable PI’s to take a strategic look at the requirements for undertaking such work and how bioinformatics capacity can be developed from personnel through to computational needs. It will additionally provide guidance on strategies for managing data, and the importance of data sharing; how to work with computational collaborators and what resources are available across the life sciences to support such work.
During this course we will not be teaching hands-on bioinformatics analysis, but we will be signposting appropriate training resources to upskill you and your team.
This course is organised in parallel with Managing a Bioinformatics Core Facility to maximise opportunities for networking. Shared sessions are highlighted in bold in the course programme.
In-person course
We plan to deliver this course in an in-person manner onsite at our training suite at EMBL-EBI, Hinxton. Please be aware that we are continually evaluating the ongoing pandemic situation and, as such, may need to change the format of courses at short notice. Your safety is paramount to us; you can read our COVID guidance policy for more information. All information is correct at time of publishing.
Who is this course for?
This course is aimed at both new and established investigators who lead a research team which currently uses bioinformatics, or where bioinformatics will be a component in future research. No prior knowledge of bioinformatics, or experience of analysis is required for this course. Applications are invited from investigators working in all settings, including academic, clinical, and industrial organisations.
What will I learn?
Learning outcomes
After this course you should be able to:
- Define the potential and pitfalls of bioinformatics use in your research
- Identify your team needs in terms of bioinformatics use and support
- Develop appropriate plans for the management and sharing of data
- Support the development of bioinformatics skills within your team
Trainers
Alex Bateman
EMBL-EBI Cath Brooksbank
EMBL-EBI Sarah Butcher
EMBL-EBI Patricia Carvajal Lopez
EMBL-EBI Alexandra Holinski
EMBL-EBI Maira Ihsan
EMBL-EBI Lee Larcombe
AMPHIMATIC Alexey Larionov
Crainfield University Paula Martinez Lavanchy
4TU.ResearchData Sarah Morgan
EMBL-EBI Dayane Rodrigues Araujo
EMBL-EBI Gabriella Rustici
AstraZeneca Enrique Sapena Ventura
EMBL-EBI Fuqi Xu
EMBL-EBI Galabina Yordanova
EMBL-EBI Eirini Zormpa
4TU.ResearchData
Programme
Time
Topic
Trainer
Day 1 - 8 June, 2022
12:00 - 13:00
Arrival, registration, and lunch
13:00 - 13:30
Course introduction and introduction to EMBL-EBI
Sarah Morgan
13:30 - 14:30
Brief introductions and participants perspectives - challenges and expectations
Sarah Morgan
14:30 - 15:30
What is a bioinformatician?
Lee Larcombe
15:30 - 14:00
Coffee break
16:00 - 17:00
The science of bioinformatics
Alex Bateman
17:00 - 18:00
Initiatives to support life sciences
EMBL-EBI training team
18:00 - 19:00
Accomodation check-in
19:00
Dinner and drinks
Red Lion, Hinxton
Day 2 - 9 June 2022
9:00 - 9:30
Morning chat
9:30 - 11:00
The importance of managing data quality and content – ensuring reproducibility
Dayane Araujo, Alexandra Holinski, Maira Ihsan
11:00 - 11:30
Coffee break
11:30 - 13:00
Describing your data – standards and ontologies
Fuqi Xu, Galabina Yordanova, Enrique Sapena Ventura
13:00 - 14:00
Lunch break
14:00 - 15:30
Planning your data management
Paula Martinez Lavanchy and Eirini Zormpa
15:30 - 16:00
Coffee break
16:00 - 17:00
Planning your data management (Continued) and Q&A
Paula Martinez Lavanchy and Eirini Zormpa
17:00 - 17:10
Break
17:10 - 18:00
Keynote lecture - R&D Data Science Academy and beyond: Learning opportunities for all
Gabriella Rustici
18:00 - 18:30
Free time
18:30
Drinks and dinner with delegates with trainers and team leads
Hinxton Hall
Day 3 - 10 June 2022
9:30 - 11:00
Building your team competencies – what do you need and how do you gain them?
Lee Larcombe and Sarah Morgan
11:00 - 11:30
Coffee break
11:30 - 13:00
What computational resources do you need to access, and how?
Rafa Grimán Canto
13:00 - 14:00
Lunch break and group photo
14:00 - 16:00
Collaboration team working and networking session
Sarah Morgan, Lee Larcombe, Sarah Butcher, Alexey Larionov
16:00 - 16:30
Course wrap-up and feedback
Patricia Carvajal-López, Ajay Mishra
16:45
Shuttle back to Cambridge Railway Station
Sarah Morgan
Programme may be subject to slight changes before registration.
Please read our page on application advice before starting your application. In order to be considered for a place on this course, you must do the following:
- Complete the online application form.
- Ensure you add relevant information to the "application submission" section where you are asked to provide three 100-word paragraphs that cover your:
- scientific biography
- work history
- current research interests
- Upload a letter of support from your supervisor or a senior colleague detailing reasons why you should be selected for the course.
Please submit all documents during the application process by midnight on 25 February 2022. Items marked * are mandatory. Incomplete applications will not be processed.
All applicants will be informed of the status of their application (successful, waiting list, rejected) by 11 March 2022. If you have any questions regarding the application process please contact Juanita Riveros.
Note that the registration fee includes:
- All meals (breakfast, lunch, dinner and refreshment breaks)
- Accommodation for two nights at Hinxton Hall Conference Centre
- Course materials
- Use of a computer in the EMBL-EBI IT Training Room throughout the course
Accommodation will be provided onsite at the Wellcome Genome Campus Hinxton Hall Conference Centre. Please contact them directly if you wish to arrange to stay additional nights around the course dates.
The course includes evening meals at the Hinxton Hall Restaurant on campus or the Red Lion Pub in nearby Hinxton village, and breaks and lunches outside the EMBL-EBI training rooms.
EMBL-EBI
EMBL-EBI
EMBL-EBI
EMBL-EBI
EMBL-EBI
EMBL-EBI
AMPHIMATIC
Crainfield University
4TU.ResearchData
EMBL-EBI
EMBL-EBI
AstraZeneca
EMBL-EBI
EMBL-EBI
EMBL-EBI
4TU.ResearchData
Programme
Time | Topic | Trainer |
Day 1 - 8 June, 2022 | ||
12:00 - 13:00 | Arrival, registration, and lunch | |
13:00 - 13:30 | Course introduction and introduction to EMBL-EBI | Sarah Morgan |
13:30 - 14:30 | Brief introductions and participants perspectives - challenges and expectations | Sarah Morgan |
14:30 - 15:30 | What is a bioinformatician? | Lee Larcombe |
15:30 - 14:00 | Coffee break | |
16:00 - 17:00 | The science of bioinformatics | Alex Bateman |
17:00 - 18:00 | Initiatives to support life sciences | EMBL-EBI training team |
18:00 - 19:00 | Accomodation check-in | |
19:00 | Dinner and drinks | Red Lion, Hinxton |
Day 2 - 9 June 2022 | ||
9:00 - 9:30 | Morning chat | |
9:30 - 11:00 | The importance of managing data quality and content – ensuring reproducibility | Dayane Araujo, Alexandra Holinski, Maira Ihsan |
11:00 - 11:30 | Coffee break | |
11:30 - 13:00 |
Describing your data – standards and ontologies | Fuqi Xu, Galabina Yordanova, Enrique Sapena Ventura |
13:00 - 14:00 | Lunch break | |
14:00 - 15:30 | Planning your data management | Paula Martinez Lavanchy and Eirini Zormpa |
15:30 - 16:00 | Coffee break | |
16:00 - 17:00 | Planning your data management (Continued) and Q&A | Paula Martinez Lavanchy and Eirini Zormpa |
17:00 - 17:10 | Break | |
17:10 - 18:00 | Keynote lecture - R&D Data Science Academy and beyond: Learning opportunities for all | Gabriella Rustici |
18:00 - 18:30 | Free time | |
18:30 | Drinks and dinner with delegates with trainers and team leads | Hinxton Hall |
Day 3 - 10 June 2022 | ||
9:30 - 11:00 | Building your team competencies – what do you need and how do you gain them? | Lee Larcombe and Sarah Morgan |
11:00 - 11:30 | Coffee break | |
11:30 - 13:00 | What computational resources do you need to access, and how? | Rafa Grimán Canto |
13:00 - 14:00 | Lunch break and group photo | |
14:00 - 16:00 | Collaboration team working and networking session | Sarah Morgan, Lee Larcombe, Sarah Butcher, Alexey Larionov |
16:00 - 16:30 | Course wrap-up and feedback | Patricia Carvajal-López, Ajay Mishra |
16:45 | Shuttle back to Cambridge Railway Station | Sarah Morgan |
Programme may be subject to slight changes before registration.
Please read our page on application advice before starting your application. In order to be considered for a place on this course, you must do the following:
- Complete the online application form.
- Ensure you add relevant information to the "application submission" section where you are asked to provide three 100-word paragraphs that cover your:
- scientific biography
- work history
- current research interests
- Upload a letter of support from your supervisor or a senior colleague detailing reasons why you should be selected for the course.
Please submit all documents during the application process by midnight on 25 February 2022. Items marked * are mandatory. Incomplete applications will not be processed.
All applicants will be informed of the status of their application (successful, waiting list, rejected) by 11 March 2022. If you have any questions regarding the application process please contact Juanita Riveros.
Note that the registration fee includes:
- All meals (breakfast, lunch, dinner and refreshment breaks)
- Accommodation for two nights at Hinxton Hall Conference Centre
- Course materials
- Use of a computer in the EMBL-EBI IT Training Room throughout the course
Accommodation will be provided onsite at the Wellcome Genome Campus Hinxton Hall Conference Centre. Please contact them directly if you wish to arrange to stay additional nights around the course dates.
The course includes evening meals at the Hinxton Hall Restaurant on campus or the Red Lion Pub in nearby Hinxton village, and breaks and lunches outside the EMBL-EBI training rooms.