Course outside EMBL-EBI
EMBL-EBI Workshop: Bioinformatics Resources for Chemical and Molecular Biology
This workshop will explore bioinformatics data resources related to the fields of biological and chemical physiology. Participants will be introduced to several databases and tool sets available through the EMBL-European Bioinformatics Institute website that can be used to identify useful scientific information and understanding of physiological processes. During the two days participants will learn about these resources through short lectures, work through practical examples and use cases of relevant databases and have time to discuss how best to make use of various tools in their own research.
Who is this course for?
This workshop is aimed at researchers working in molecular physiology with intertests in biology, chemistry and physics. It will be useful for scientists wanting to learn more about biomolecular data resources and how bioinformatics tools can be used to learn more about the function and interactions of proteins of interest.
What will I learn?
Learning outcomes
At the end of the workshop participants should have developed an appreciation for the publically-available data that they can use in their own research, how to begin basic analysis and the next steps they might want to take in using it as part of their own research. Further information on each module can be found below.
Course content
Modules
- ChEMBL and SureChEMBL: Bioactive molecules, targets, and patent resources
- Interactions and pathways
- Introduction to EMBL-EBI resources and tools
- Protein sequence and Function (UniProt, Gene Ontology)
- Sequence searching and alignments
Trainers
Fabio Madeira
EMBL-EBI, UK Hema Bye-A-Jee
EMBL-EBI, UK Anne Hersey
EMBL-EBI, UK Birgit Meldal
EMBL-EBI, UK
Programme
Day 1 – Monday 14 October 2019
9:00-09:15
Arrival and registration
09:15-09:45
Introduction to EMBL-EBI data resources
Hema Bye-A-Jee & Fabio Madeira
09:45-10:30
Sequence searching and alignments
Fabio Madeira
10:30-10:45
Break
10:45-13:00
Sequence searching and alignments
Fabio Madeira
13:00-14:00
Lunch
14:00-15:30
Introduction to UniProt
Hema Bye-A-Jee
15:30-15:45
Break
15:45-17:15
Protein sequence and function
Hema Bye-A-Jee
17:30
End of day
Day 1 – Tuesday 15 October 2019
9:00-09:15
Arrival and registration
09:15-10:30
Bioactive molecules, targets, and patent resources
Anne Hersey
10:30-10:45
Break
10:45-13:00
Bioactive molecules, targets, and patent resources
Anne Hersey
13:00-14:00
Lunch
14:00-15:30
Interactions and pathways
Birgit Meldal
15:30-15:45
Break
15:45-17:15
Interactions and pathways
Birgit Meldal
17:30
End of day
Registration for this course will be handled by MPI Dortmund.
EMBL-EBI, UK
EMBL-EBI, UK
EMBL-EBI, UK
EMBL-EBI, UK
Programme
Day 1 – Monday 14 October 2019 |
||
---|---|---|
9:00-09:15 | Arrival and registration | |
09:15-09:45 | Introduction to EMBL-EBI data resources | Hema Bye-A-Jee & Fabio Madeira |
09:45-10:30 | Sequence searching and alignments | Fabio Madeira |
10:30-10:45 | Break | |
10:45-13:00 | Sequence searching and alignments | Fabio Madeira |
13:00-14:00 | Lunch | |
14:00-15:30 | Introduction to UniProt | Hema Bye-A-Jee |
15:30-15:45 | Break | |
15:45-17:15 | Protein sequence and function | Hema Bye-A-Jee |
17:30 | End of day |
Day 1 – Tuesday 15 October 2019 |
||
---|---|---|
9:00-09:15 | Arrival and registration | |
09:15-10:30 | Bioactive molecules, targets, and patent resources | Anne Hersey |
10:30-10:45 | Break | |
10:45-13:00 | Bioactive molecules, targets, and patent resources | Anne Hersey |
13:00-14:00 | Lunch | |
14:00-15:30 | Interactions and pathways | Birgit Meldal |
15:30-15:45 | Break | |
15:45-17:15 | Interactions and pathways | Birgit Meldal |
17:30 | End of day |
Registration for this course will be handled by MPI Dortmund.