- Course overview
- Search within this course
- What is Reactome?
- What does Reactome contain?
- What can I do with Reactome?
- Searching Reactome
- Pathway Enrichment Analysis
- Getting data from Reactome
- Contributing to Reactome
- Your feedback
- Get help and support on Reactome
All materials are free cultural works licensed under a Creative Commons Attribution 4.0 International (CC BY 4.0) license, except where further licensing details are provided.
Getting data from Reactome
- All Reactome pathways can be downloaded from the Reactome website in several formats. For reference use, Rich Text Format (Word compatible) and PDF formats are available. For computational re-use, SBML level 2.3 and BioPAX level 2 and 3 formats are available
- Individual pathways can be downloaded using links available at the bottom of the pathway browser
- Analysis results can be downloaded as CSV, PDF or JSON formats
- Reactome hosts an icon library that contains over 1500 artistically designed biological molecules for use in publications and presentations (available in SVG, PNG and EMF formats)
- Human protein-protein interactions are available in PSI-MITAB format
- Pathway diagrams are available in PDF and PNG formats
- The Reactome MySQL database, schema, code and web interface can be downloaded for local implementation and development