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Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 8sxx
Q-score: 0.2
Shen Z, Lin Q, Yang XY, Fosuah E, Fu TM
Mol Cell (2023) 83 pp. 4586-4599.e5 [ DOI: doi:10.1016/j.molcel.2023.11.007 Pubmed: 38096827 ]
- Nicotinamide-adenine-dinucleotide (663 Da, Ligand)
- Sir2-like domain-containing protein (46 kDa, Protein from Escherichia coli)
- E. coli dodecamer sir2 (Complex from Escherichia coli)
E. coli Sir2_HerA complex (12:6) with ATPgamaS
Resolution: 3.25 Å
EM Method: Single-particle
Fitted PDBs: 8uae
Q-score: 0.492
Shen Z, Lin Q, Yang XY, Fosuah E, Fu TM
Mol Cell (2023) 83 pp. 4586-4599.e5 [ DOI: doi:10.1016/j.molcel.2023.11.007 Pubmed: 38096827 ]
- Phosphothiophosphoric acid-adenylate ester (523 Da, Ligand)
- [(2r,3s,4r,5r)-5-(6-aminopurin-9-yl)-3,4-dihydroxy-oxolan-2-yl]methyl [hydroxy-[[(2r,3s,4r,5s)-3,4,5-trihydroxyoxolan-2-yl]methoxy]phosphoryl] hydrogen phosphate (559 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
- Sir2-like domain-containing protein (46 kDa, Protein from Escherichia coli)
- Nucleoside triphosphate hydrolase (68 kDa, Protein from Escherichia coli)
- Sir2_hera complex (12:6) with atpgamas (Complex from Escherichia coli)
E. coli Sir2_HerA complex (12:6) bound with NAD+
Resolution: 3.18 Å
EM Method: Single-particle
Fitted PDBs: 8uaf
Q-score: 0.393
Shen Z, Lin Q, Yang XY, Fosuah E, Fu TM
Mol Cell (2023) 83 pp. 4586-4599.e5 [ DOI: doi:10.1016/j.molcel.2023.11.007 Pubmed: 38096827 ]
- [(2r,3s,4r,5r)-5-(6-aminopurin-9-yl)-3,4-dihydroxy-oxolan-2-yl]methyl [hydroxy-[[(2r,3s,4r,5s)-3,4,5-trihydroxyoxolan-2-yl]methoxy]phosphoryl] hydrogen phosphate (559 Da, Ligand)
- Hera-sir2 complex bound with nad+ (Complex from Escherichia coli)
- Nicotinamide-adenine-dinucleotide (663 Da, Ligand)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
- Sir2-like domain-containing protein (46 kDa, Protein from Escherichia coli)
- Nucleoside triphosphate hydrolase (68 kDa, Protein from Escherichia coli)
XBB.1.5.10 RBD in complex with ACE2
Resolution: 3.06 Å
EM Method: Single-particle
Fitted PDBs: 8wtd
Q-score: 0.508
Jian F, Feng L, Yang S, Yu Y, Wang L, Song W, Yisimayi A, Chen X, Xu Y, Wang P, Yu L, Wang J, Liu L, Niu X, Wang J, Xiao T, An R, Wang Y, Gu Q, Shao F, Jin R, Shen Z, Wang Y, Wang X, Cao Y
PLoS Pathog (2023) 19 pp. e1011868-e1011868 [ Pubmed: 38117863 DOI: doi:10.1371/journal.ppat.1011868 ]
- Spike protein s2' (22 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Rbd in complex with ace2 (Complex)
- Human ace2 (Complex from Homo sapiens)
- Xbb.1.5 rbd (Complex from Severe acute respiratory syndrome coronavirus 2)
- Angiotensin-converting enzyme 2 (92 kDa, Protein from Homo sapiens)
XBB.1.5.70 spike protein in complex with ACE2
Resolution: 4.64 Å
EM Method: Single-particle
Fitted PDBs: 8wtj
Q-score: 0.202
Jian F, Feng L, Yang S, Yu Y, Wang L, Song W, Yisimayi A, Chen X, Xu Y, Wang P, Yu L, Wang J, Liu L, Niu X, Wang J, Xiao T, An R, Wang Y, Gu Q, Shao F, Jin R, Shen Z, Wang Y, Wang X, Cao Y
PLoS Pathog (2023) 19 pp. e1011868-e1011868 [ Pubmed: 38117863 DOI: doi:10.1371/journal.ppat.1011868 ]
- Spike glycoprotein (145 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Processed angiotensin-converting enzyme 2 (68 kDa, Protein from Homo sapiens)
- Spike protein (Complex from Severe acute respiratory syndrome coronavirus 2)
- Xbb.1.5.70 spike protein in complex with hace2 (Complex)
- Human ace2 (Complex from Homo sapiens)
XBB.1.5 spike protein in complex with ACE2
Resolution: 4.34 Å
EM Method: Single-particle
Fitted PDBs: 8wrm
Q-score: 0.219
Jian F, Feng L, Yang S, Yu Y, Wang L, Song W, Yisimayi A, Chen X, Xu Y, Wang P, Yu L, Wang J, Liu L, Niu X, Wang J, Xiao T, An R, Wang Y, Gu Q, Shao F, Jin R, Shen Z, Wang Y, Wang X, Cao Y
PLoS Pathog (2023) 19 pp. e1011868-e1011868 [ Pubmed: 38117863 DOI: doi:10.1371/journal.ppat.1011868 ]
- Xbb.1.5 spike protein in complex with hace2 (Complex)
- Processed angiotensin-converting enzyme 2 (68 kDa, Protein from Homo sapiens)
- Hace2 (Complex from Homo sapiens)
- Spike glycoprotein (135 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Spike protein (Complex from Severe acute respiratory syndrome coronavirus 2)
XBB.1.5.10 spike protein in complex with ACE2
Resolution: 3.9 Å
EM Method: Single-particle
Fitted PDBs: 8wro
Q-score: 0.193
Jian F, Feng L, Yang S, Yu Y, Wang L, Song W, Yisimayi A, Chen X, Xu Y, Wang P, Yu L, Wang J, Liu L, Niu X, Wang J, Xiao T, An R, Wang Y, Gu Q, Shao F, Jin R, Shen Z, Wang Y, Wang X, Cao Y
PLoS Pathog (2023) 19 pp. e1011868-e1011868 [ Pubmed: 38117863 DOI: doi:10.1371/journal.ppat.1011868 ]
- Spike glycoprotein,spike glycoprotein,spike glycoprotein,fusion protein (145 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Processed angiotensin-converting enzyme 2 (68 kDa, Protein from Homo sapiens)
- Xbb.1.5.10 spike protein in complex with ace2 (Complex)
- Spike protein (Complex from Severe acute respiratory syndrome coronavirus 2)
- Human ace2 (Complex from Homo sapiens)
SARS-CoV-2 XBB.1.5.70 in complex with ACE2
Resolution: 3.08 Å
EM Method: Single-particle
Fitted PDBs: 8wrh
Q-score: 0.497
Jian F, Feng L, Yang S, Yu Y, Wang L, Song W, Yisimayi A, Chen X, Xu Y, Wang P, Yu L, Wang J, Liu L, Niu X, Wang J, Xiao T, An R, Wang Y, Gu Q, Shao F, Jin R, Shen Z, Wang Y, Wang X, Cao Y
PLoS Pathog (2023) 19 pp. e1011868-e1011868 [ Pubmed: 38117863 DOI: doi:10.1371/journal.ppat.1011868 ]
- Sars-cov-2 xbb.1.5.70 in complex with ace2 (Complex from Severe acute respiratory syndrome coronavirus 2)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Xbb.1.5.70 (Complex from Severe acute respiratory syndrome coronavirus 2)
- Spike protein s2' (22 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Ace2 (Complex from Homo sapiens)
- Angiotensin-converting enzyme 2 (92 kDa, Protein from Homo sapiens)
Cryo-EM Structure of SARS-CoV-2 BA.2 Spike protein in complex with BA7535
Resolution: 2.44 Å
EM Method: Single-particle
Fitted PDBs: 8h7l
Q-score: 0.377
Wang Y, Yan A, Song D, Duan M, Dong C, Chen J, Jiang Z, Gao Y, Rao M, Feng J, Zhang Z, Qi R, Ma X, Liu H, Yu B, Wang Q, Zong M, Jiao J, Xing P, Pan R, Li D, Xiao J, Sun J, Li Y, Zhang L, Shen Z, Sun B, Zhao Y, Zhang L, Dai J, Zhao J, Wang L, Dou C, Liu Z, Zhao J
Nat Commun (2024) 15 pp. 842-842 [ Pubmed: 38287016 DOI: doi:10.1038/s41467-024-45050-3 ]
- Cryo-em structure of sars-cov-2 ba.2 spike protein in complex with ba7535 (Complex)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Ba7535 fab heavt chain (49 kDa, Protein from Homo sapiens)
- Sars-cov-2 ba.2 spike protein (Complex from Severe acute respiratory syndrome coronavirus 2)
- Spike glycoprotein (124 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Ba7535 fab light chain (23 kDa, Protein from Homo sapiens)
- Ba7535 (Complex from Homo sapiens)
Cryo-EM structure of SARS-CoV-2 BA.2 RBD in complex with BA7535 fab (local refinement)
Resolution: 3.07 Å
EM Method: Single-particle
Fitted PDBs: 8h7z
Q-score: 0.461
Wang Y, Yan A, Song D, Duan M, Dong C, Chen J, Jiang Z, Gao Y, Rao M, Feng J, Zhang Z, Qi R, Ma X, Liu H, Yu B, Wang Q, Zong M, Jiao J, Xing P, Pan R, Li D, Xiao J, Sun J, Li Y, Zhang L, Shen Z, Sun B, Zhao Y, Zhang L, Dai J, Zhao J, Wang L, Dou C, Liu Z, Zhao J
Nat Commun (2024) 15 pp. 842-842 [ Pubmed: 38287016 DOI: doi:10.1038/s41467-024-45050-3 ]
- Ba7535 fab (23 kDa, Protein from Homo sapiens)
- Ba7535 fab (49 kDa, Protein from Homo sapiens)
- Spike glycoprotein (22 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Cryo-em structure of sars-cov-2 ba.2 rbd in complex with ba7535 fab (local refinement) (Complex from Severe acute respiratory syndrome coronavirus 2)