Electron Microscopy Data Bank

EMD-39481

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2.08A Apoferritin Structure Solved Using an Indirect Scintillator-Coupled CMOS Detector at 300 kV

Release date: April 10, 2024
Resolution: 2.08 Å
EM Method: Single-particle

Aramaki S, Yoshida Y, Tanihara T, Oyama K, Otsuki K, Terada Y, Matsunaga N, Ohdo S, Mayanagi K

To Be Published

Sample:

Apoferritin (440 kDa, Complex from Mus musculus)

EMPIAR-11895

EMinsight: a tool to capture cryoEM microscope configuration and experimental outcomes for analysis and deposition

Release date: April 2, 2024
Dataset size: 1.2 TB
Experiment type: Exception

Morris KL, Harrison PJ, Cha J, Riggs S, Hatton D, Thiyagalingamc J

To Be Published

Image sets:

Unaligned multiframe micrographs of apoferritin

EMPIAR-11866

Release date: March 26, 2024
Dataset size: 963.4 GB
Experiment type: EMDB

Küçükoğlu B., Mohammed I., Nazarov S.U., Myasnikov A.G., Stahlberg H.

To Be Published

Image sets:

Unaligned multi-frames electron event recording (EER) movies

EMD-19436

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Cryo-EM structure of mouse heavy-chain apoferritin

Release date: March 13, 2024
Resolution: 1.09 Å
EM Method: Single-particle
Fitted PDBs: 8rqb
Q-score: 0.942

Nazarov S, Mohammed I, Kucukoglu B, Myasnikov A, Stahlberg H

To Be Published

Sample:

Apoferritin from mus musculus (Complex from Mus musculus)
Zinc ion (65 Da, Ligand)
Fe (iii) ion (55 Da, Ligand)
Water (18 Da, Ligand)
Ferritin heavy chain, n-terminally processed (20 kDa, Protein from Mus musculus)

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EMD-43286

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Human heavy-chain apoferritin refined in C1 from cryo-ET data filtered by tomoDRGN

Release date: March 6, 2024
Resolution: 3.5 Å
EM Method: Subtomogram averaging

Powell BM, Davis JH

bioRxiv (2023) [ DOI: doi:10.1101/2023.05.31.542975 Pubmed: 37398315 ]

Sample:

Heavy-chain apoferritin (Complex from Homo sapiens)

EMD-19666

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Cryo-electron tomogram of apoferritin

Release date: Feb. 28, 2024
EM Method: Tomography

Comet M, Dijkman PM, Boer Iwema R, Franke T, Masiulis S, Schampers R, Raschdorf O, Grollios F, Pryor Jr EE, Drulyte I

Acta Crystallogr D Struct Biol (2024) 80 pp. 247-258 [ Pubmed: 38512070 DOI: doi:10.1107/S2059798324001840 ]

Sample:

Apoferritin (Complex from Mus musculus)

EMD-41933

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CryoEM map of horse spleen apoferritin determined as a reference for benchmarking square and rectangular apertures for cryo-EM

Release date: Feb. 28, 2024
Resolution: 1.81 Å
EM Method: Single-particle

Brown HG, Smith D, Wardle BC, Hanssen E

Nat Methods (2024) 21 pp. 566-568 [ Pubmed: 38459386 DOI: doi:10.1038/s41592-024-02206-9 ]

Sample:

Apoferritin from equine spleen (Protein from Equus caballus)
Apoferritin from equine spleen (481 kDa, Complex from Equus caballus)

EMD-41936

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CryoEM map of horse spleen apoferritin determined as a reference for benchmarking square and rectangular apertures for cryo-EM (Falcon IV round beam)

Release date: Feb. 28, 2024
Resolution: 1.83 Å
EM Method: Single-particle

Brown HG, Smith D, Wardle BC, Hanssen E

Nat Methods (2024) 21 pp. 566-568 [ Pubmed: 38459386 DOI: doi:10.1038/s41592-024-02206-9 ]

Sample:

Apoferritin from equine spleen (481 kDa, Complex from Equus caballus)

EMD-41937

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CryoEM map of horse spleen apoferritin determined for benchmarking square and rectangular apertures for cryo-EM (Falcon IV square beam)

Release date: Feb. 28, 2024
Resolution: 1.76 Å
EM Method: Single-particle

Brown HG, Smith D, Wardle BC, Hanssen E

Nat Methods (2024) 21 pp. 566-568 [ Pubmed: 38459386 DOI: doi:10.1038/s41592-024-02206-9 ]

Sample:

Apoferritin from equine spleen (481 kDa, Complex from Equus caballus)

EMD-41938

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CryoEM map of horse spleen apoferritin determined for benchmarking square and rectangular apertures for cryo-EM (Gatan K3 rectangular beam)

Release date: Feb. 28, 2024
Resolution: 1.81 Å
EM Method: Single-particle

Brown HG, Smith D, Wardle BC, Hanssen E

Nat Methods (2024) 21 pp. 566-568 [ Pubmed: 38459386 DOI: doi:10.1038/s41592-024-02206-9 ]

Sample:

Apoferritin from equine spleen (481 kDa, Complex from Equus caballus)

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