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PDCoV spike glycoprotein ectodomain in complex with the 22C10 antibody Fab fragment
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 8r9w
Q-score: 0.531
Debski-Antoniak O, Du W, Drabek D, van Haperen R, van Dortmondt M, van der Lee J, Drulyte I, van Kuppeveld FJM, Grosveld F, Hurdiss DL, Bosch BJ
To Be Published
- 22c10 antibody light chain (11 kDa, Protein from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- 22c10 antibody heavy chain (13 kDa, Protein from Homo sapiens)
- Spike protein (119 kDa, Protein from Deltacoronavirus)
- Pdcov spike glycoprotein ectodomain in complex with the 22c10 antibody fab fragment (520 kDa, Complex from Homo sapiens)
S1B domain of the PDCoV spike glycoprotein in complex with the 67B12 and 42H3 antibody Fab fragments
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 8r9y
Q-score: 0.522
Debski-Antoniak O, Drabek D, van Haperen R, van Dortmondt M, van der Lee J, Drulyte I, van Kuppeveld FJM, Grosveld F, Hurdiss DL, Bosch BJ
To Be Published
- 42h3 antibody light chain (23 kDa, Protein from Homo sapiens)
- 42h3 antibody heavy chain (23 kDa, Protein from Homo sapiens)
- Spike protein (22 kDa, Protein from Porcine deltacoronavirus)
- Pdcov spike s1b domain in complex with the 67b12 and 42h3 antibody fab fragments (105 kDa, Complex from Homo sapiens)
- 67b12 antibody heavy chain (22 kDa, Protein from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- 67b12 antibody light chain (23 kDa, Protein from Homo sapiens)
S1B domain of the PDCoV spike glycoprotein in complex with the 67B12 and 46E6 antibody Fab fragments
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 8r9z
Q-score: 0.539
Debski-Antoniak O, Drabek D, van Haperen R, van Dortmondt M, van der Lee J, Drulyte I, van Kuppeveld FJM, Grosveld F, Hurdiss DL, Bosch BJ
To Be Published
- 46e6 antibody heavy chain (23 kDa, Protein from Homo sapiens)
- 46e6 antibody heavy chain (23 kDa, Protein from Homo sapiens)
- Spike protein (12 kDa, Protein from Porcine deltacoronavirus)
- 67b12 antibody heavy chain (22 kDa, Protein from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- 67b12 antibody light chain (23 kDa, Protein from Homo sapiens)
- Pdcov spike s1b domain in complex with the 67b12 and 46e6 antibody fab fragments (105 kDa, Complex from Homo sapiens)
Influenza virus neuraminidase N1 NC13 ectodomain with a tetrabrachio-domain stalk
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 9ewq
Q-score: 0.61
Pascha MN, Ballegeer M, Roelofs MC, Meuris L, Albulescu IC, van Kuppeveld FJM, Hurdiss DL, Bosch BJ, Zeev-Ben-Mordehai T, Saelens X, de Haan CAM
To Be Published
Human Coronavirus HKU1 spike glycoprotein
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 8ohn
Q-score: 0.42
Pronker MF, Creutznacher R, Drulyte I, Hulswit RJG, Li Z, van Kuppeveld FJM, Snijder J, Lang Y, Bosch BJ, Boons GJ, Frank M, de Groot RJ, Hurdiss DL
Nature (2023) 624 pp. 201-206 [ Pubmed: 37794193 DOI: doi:10.1038/s41586-023-06599-z ]
- Trimeric spike glycoprotein (440 kDa, Complex from Human coronavirus HKU1)
- Spike glycoprotein (147 kDa, Protein from Human coronavirus HKU1)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 8opm
Q-score: 0.31
Pronker MF, Creutznacher R, Drulyte I, Hulswit RJG, Li Z, van Kuppeveld FJM, Snijder J, Lang Y, Bosch BJ, Boons GJ, Frank M, de Groot RJ, Hurdiss DL
Nature (2023) 624 pp. 201-206 [ Pubmed: 37794193 DOI: doi:10.1038/s41586-023-06599-z ]
- Trimeric spike glycoprotein (440 kDa, Complex from Human coronavirus HKU1)
- Spike glycoprotein,general control transcription factor gcn4 (147 kDa, Protein from Saccharomyces cerevisiae)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
Resolution: 4.7 Å
EM Method: Single-particle
Fitted PDBs: 8opn
Q-score: 0.133
Pronker MF, Creutznacher R, Drulyte I, Hulswit RJG, Li Z, van Kuppeveld FJM, Snijder J, Lang Y, Bosch BJ, Boons GJ, Frank M, de Groot RJ, Hurdiss DL
Nature (2023) 624 pp. 201-206 [ Pubmed: 37794193 DOI: doi:10.1038/s41586-023-06599-z ]
- Trimeric spike glycoprotein (440 kDa, Complex from Human coronavirus HKU1)
- Spike glycoprotein,general control transcription factor gcn4 (147 kDa, Protein from Saccharomyces cerevisiae)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 8opo
Q-score: 0.198
Pronker MF, Creutznacher R, Drulyte I, Hulswit RJG, Li Z, van Kuppeveld FJM, Snijder J, Lang Y, Bosch BJ, Boons GJ, Frank M, de Groot RJ, Hurdiss DL
Nature (2023) 624 pp. 201-206 [ Pubmed: 37794193 DOI: doi:10.1038/s41586-023-06599-z ]
- Trimeric spike glycoprotein (440 kDa, Complex from Human coronavirus HKU1)
- Spike glycoprotein,general control transcription factor gcn4 (147 kDa, Protein from Saccharomyces cerevisiae)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
Pronker MF, Creutznacher R, Drulyte I, Hulswit RJG, Li Z, van Kuppeveld FJM, Snijder J, Lang Y, Bosch BJ, Boons GJ, Frank M, de Groot RJ, Hurdiss DL
Nature (2023) 624 pp. 201-206 [ Pubmed: 37794193 DOI: doi:10.1038/s41586-023-06599-z ]
- Spike glycoprotein (Protein from Human coronavirus HKU1)
- Trimeric spike glycoprotein (440 kDa, Complex from Human coronavirus HKU1)
Local refinement of the Human Coronavirus HKU1 spike glycoprotein
Pronker MF, Creutznacher R, Drulyte I, Hulswit RJG, Li Z, van Kuppeveld FJM, Snijder J, Lang Y, Bosch BJ, Boons GJ, Frank M, de Groot RJ, Hurdiss DL
Nature (2023) 624 pp. 201-206 [ Pubmed: 37794193 DOI: doi:10.1038/s41586-023-06599-z ]
- Spike glycoprotein (Protein from Human coronavirus HKU1)
- Trimeric spike glycoprotein (440 kDa, Complex from Human coronavirus HKU1)