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PSI-MI Validator
Input Form
Changes
Help
About Validator
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Overview
The PSI Validator currently validate files in
PSI-MI XML 2.5
,
PSI-MI XML 3.0
,
MITAB 2.5
,
MITAB 2.6
and
MITAB 2.7
format.
PSI-MI validation
File upload
X
Source:
From local file
From URL
X
File:
X
URL:
Single MI file
ZIP file containing one MI file (if several MI files, only one will be validated)
Load an example
Model and scope selection
X
Model:
Molecular Interactions
Protein Affinity Reagents
X
File Syntax Only
Controlled Vocabulary Usage
PSI-MI
MIMIx
IMEx
Customized rules
X
PSI-MI
Alias syntax check
Interaction and Participant's Confidence syntax check
Experiment's publication check
Feature range consistency Check
Interaction's experiment check
Interactor sequence check
Interactor name's check
Parameter's syntax check
Database cross reference Check
Database cross reference syntax check
Alias syntax check
Controlled vocabulary name's check
Checksum syntax check
MI file grammar check
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Unselect all
X
MIMIx
Experiment Host Organism Check
Confidence Score Definition Check
Interactor Organism Check
Interactor database reference check
Organism Check
Participant Identification Method check
Experiment bibliographic reference check
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Unselect all
X
IMEx
Dependency Check : Experiment Cross reference database and cross reference qualifier
Dependency Check : Feature Cross reference database and cross reference qualifier
Dependency Check : Participant's feature type and participant's feature range status
Dependency Check : Participant's feature type and feature detection method
Binding domain Check
Participant's feature Type Check
Dependency Check : Interaction Cross reference database and cross reference qualifier
Interaction Imex-primary cross reference check
Dependency Check : Interaction detection method and interaction type
Interaction Type Check
Interaction Figure Legend Check
Interaction Identity Xref Check
Negative interaction check
Interactor type check
Protein identity check
Dependency Check : interactor Cross reference database and cross reference qualifier
TaxId Organism Check
Tissue XRef Check
Cell line XRef Check
Dependency Check : Interaction detection method and participant's biological role
Dependency Check : Interaction detection method and participant identification method
Dependency Check : Interaction detection method and participant's experimental role
Publication Imex-primary cross reference check
Select All
Unselect all
X
File Syntax Only
Controlled Vocabulary Usage
