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Services
PDBe’s REST API is a programmatic way to obtain information from the PDB. You can access details about sample, experiment, models, compounds, cross-references, publications, quality, assemblies and more. |
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Advanced search facility to search PDBe resources, with over 100 data categories and sequence search (FASTA/ Phmmer). |
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Structure Integration with Function, Taxonomy and Sequence (SIFTS) is a project in the PDBe-KB resource for residue-level mapping between UniProt and PDB entries. SIFTS also provides annotation from the IntEnz, GO, InterPro, Pfam, CATH, SCOP, PubMed… |
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Identify structural homologues in the PDB. PDBe's Secondary Structure Matching service (SSM) allows you to interactively compare, align and superimpose protein structures in 3D. |
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Explore macromolecular (protein, DNA/RNA and ligand) interfaces and predict the quarternary structure of your protein. |
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PDBeChem provides a comprehensive search facility for finding chemical components (ligands, small molecules and monomers) referred to in PDB entries and maintained by wwPDB. |
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To support research efforts to understand more about the SARS-CoV-2 virus and the structures of its proteins, we have created dedicated PDBe-KB pages to highlight important structural features from released PDB entries. These pages include all… |
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Access to the wwPDB OneDep system for PDB and EMDB deposition services |
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Assess the quality of models and maps using the wwPDB validation server |
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Batch downloads for arbitrary subsets of the PDB data including structural and experimental data, their validations and annotations. |
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3D-Beacons is an open collaboration between providers of macromolecular structure models. This collaboration aims to provide model coordinates and meta-information from all the contributing data resources in a standardised data format, on a unified… |
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FTP access to PDB and EMDB entries, and other PDBe resources. |
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The PDB Component Library is a collection of web components for visualization of PDB and related protein structural data. |
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Mol* (/'molstar/) is a modern web-based open-source toolkit for visualisation and analysis of large-scale molecular data |
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GitHub repository for PDBe, providing access to source code for a host of open-access PDBe software packages. |
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PDBeCIF is a lightweight pure python package for manipulating mmCIF formatted files distributed by the wwPDB. The package contains objects and modules for accessing mmCIF data in different ways depending on the type and speed of task required. |
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FTP access to small molecule data referred in PDB entries. This includes extended mmCIF definitions, images, and chemical components in various file formats. |
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PDBe has redesigned its webpage and services. As a result some of the old services have been retired but their functionality is available via newly designed services and web pages. |
