EMD-0608

Single-particle
6.3 Å
EMD-0608 Deposition: 24/02/2019
Map released: 30/10/2019
Last modified: 20/03/2024
Overview 3D View Sample Experiment Validation Volume Browser Additional data Links
Overview 3D View Sample Experiment Validation Volume Browser Additional data Links

EMD-0608

Reconstruction of CDTb Double Heptamer Long Form using C7 Symmetry

EMD-0608

Single-particle
6.3 Å
EMD-0608 Deposition: 24/02/2019
Map released: 30/10/2019
Last modified: 20/03/2024
Overview 3D View Sample Experiment Validation Volume Browser Additional data Links
Sample Organism: Clostridioides difficile
Sample: CDTb
Fitted models: 6o2m (Avg. Q-score: 0.336)

Deposition Authors: Lacy DB , Sheedlo MJ
Structural insights into the transition of Clostridioides difficile binary toxin from prepore to pore.
Anderson DM, Sheedlo MJ, Jensen JL , Lacy DB
(2020) Nat Microbiol , 5 , 102 - 107
PUBMED: 31712627
DOI: doi:10.1038/s41564-019-0601-8
ISSN: 2058-5276
Abstract:
Clostridioides (formerly Clostridium) difficile is a Gram-positive, spore-forming anaerobe and a leading cause of hospital-acquired infection and gastroenteritis-associated death in US hospitals1. The disease state is usually preceded by disruption of the host microbiome in response to antibiotic treatment and is characterized by mild to severe diarrhoea. C. difficile infection is dependent on the secretion of one or more AB-type toxins: toxin A (TcdA), toxin B (TcdB) and the C. difficile transferase toxin (CDT)2. Whereas TcdA and TcdB are considered the primary virulence factors, recent studies suggest that CDT increases the severity of C. difficile infection in some of the most problematic clinical strains3. To better understand how CDT functions, we used cryo-electron microscopy to define the structure of CDTb, the cell-binding component of CDT. We obtained structures of several oligomeric forms that highlight the conformational changes that enable conversion from a prepore to a β-barrel pore. The structural analysis also reveals a glycan-binding domain and residues involved in binding the host-cell receptor, lipolysis-stimulated lipoprotein receptor. Together, these results provide a framework to understand how CDT functions at the host cell interface.