EMD-10476
Neck of native GTA particle computed with C12 symmetry
EMD-10476
Single-particle3.32 Å

Map released: 22/07/2020
Last modified: 22/05/2024
Sample Organism:
Rhodobacter capsulatus
Sample: Rhodobacter capsulatus DE442 gene transfer agent connector
Fitted models: 6te8 (Avg. Q-score: 0.523)
Deposition Authors: Bardy P
,
Fuzik T
Sample: Rhodobacter capsulatus DE442 gene transfer agent connector
Fitted models: 6te8 (Avg. Q-score: 0.523)
Deposition Authors: Bardy P


Structure and mechanism of DNA delivery of a gene transfer agent.
Bardy P
,
Fuzik T
,
Hrebik D
,
Pantucek R
,
Thomas Beatty J
,
Plevka P
(2020) Nat Commun , 11 , 3034 - 3034






(2020) Nat Commun , 11 , 3034 - 3034
Abstract:
Alphaproteobacteria, which are the most abundant microorganisms of temperate oceans, produce phage-like particles called gene transfer agents (GTAs) that mediate lateral gene exchange. However, the mechanism by which GTAs deliver DNA into cells is unknown. Here we present the structure of the GTA of Rhodobacter capsulatus (RcGTA) and describe the conformational changes required for its DNA ejection. The structure of RcGTA resembles that of a tailed phage, but it has an oblate head shortened in the direction of the tail axis, which limits its packaging capacity to less than 4,500 base pairs of linear double-stranded DNA. The tail channel of RcGTA contains a trimer of proteins that possess features of both tape measure proteins of long-tailed phages from the family Siphoviridae and tail needle proteins of short-tailed phages from the family Podoviridae. The opening of a constriction within the RcGTA baseplate enables the ejection of DNA into bacterial periplasm.
Alphaproteobacteria, which are the most abundant microorganisms of temperate oceans, produce phage-like particles called gene transfer agents (GTAs) that mediate lateral gene exchange. However, the mechanism by which GTAs deliver DNA into cells is unknown. Here we present the structure of the GTA of Rhodobacter capsulatus (RcGTA) and describe the conformational changes required for its DNA ejection. The structure of RcGTA resembles that of a tailed phage, but it has an oblate head shortened in the direction of the tail axis, which limits its packaging capacity to less than 4,500 base pairs of linear double-stranded DNA. The tail channel of RcGTA contains a trimer of proteins that possess features of both tape measure proteins of long-tailed phages from the family Siphoviridae and tail needle proteins of short-tailed phages from the family Podoviridae. The opening of a constriction within the RcGTA baseplate enables the ejection of DNA into bacterial periplasm.