EMD-14122

Single-particle
3.8 Å
EMD-14122 Deposition: 09/01/2022
Map released: 15/06/2022
Last modified: 17/07/2024
Overview 3D View Sample Experiment Validation Volume Browser Additional data Links
Overview 3D View Sample Experiment Validation Volume Browser Additional data Links

EMD-14122

TIR-SAVED effector bound to cA3

EMD-14122

Single-particle
3.8 Å
EMD-14122 Deposition: 09/01/2022
Map released: 15/06/2022
Last modified: 17/07/2024
Overview 3D View Sample Experiment Validation Volume Browser Additional data Links
Sample Organism: Microbacterium ketosireducens
Sample: one tier of TIR_SAVED bound to cA3
Fitted models: 7qqk (Avg. Q-score: 0.405)
Raw data: EMPIAR-11686

Deposition Authors: Spagnolo L , White MF , Hogrel G
Cyclic nucleotide-induced helical structure activates a TIR immune effector.
Hogrel G , Guild A , Graham S , Rickman H, Gruschow S, Bertrand Q , Spagnolo L , White MF
(2022) Nature , 608 , 808 - 812
PUBMED: 35948638
DOI: doi:10.1038/s41586-022-05070-9
ISSN: 1476-4687
ASTM: NATUAS
Abstract:
Cyclic nucleotide signalling is a key component of antiviral defence in all domains of life. Viral detection activates a nucleotide cyclase to generate a second messenger, resulting in activation of effector proteins. This is exemplified by the metazoan cGAS-STING innate immunity pathway1, which originated in bacteria2. These defence systems require a sensor domain to bind the cyclic nucleotide and are often coupled with an effector domain that, when activated, causes cell death by destroying essential biomolecules3. One example is the Toll/interleukin-1 receptor (TIR) domain, which degrades the essential cofactor NAD+ when activated in response to infection in plants and bacteria2,4,5 or during programmed nerve cell death6. Here we show that a bacterial antiviral defence system generates a cyclic tri-adenylate that binds to a TIR-SAVED effector, acting as the 'glue' to allow assembly of an extended superhelical solenoid structure. Adjacent TIR subunits interact to organize and complete a composite active site, allowing NAD+ degradation. Activation requires extended filament formation, both in vitro and in vivo. Our study highlights an example of large-scale molecular assembly controlled by cyclic nucleotides and reveals key details of the mechanism of TIR enzyme activation.