EMD-16118

Single-particle
2.8 Å
EMD-16118 Deposition: 10/11/2022
Map released: 09/08/2023
Last modified: 13/09/2023
Overview 3D View Sample Experiment Validation Volume Browser Additional data Links
Overview 3D View Sample Experiment Validation Volume Browser Additional data Links

EMD-16118

Structure of GroEL-ATP complex under continuous turnover conditions

EMD-16118

Single-particle
2.8 Å
EMD-16118 Deposition: 10/11/2022
Map released: 09/08/2023
Last modified: 13/09/2023
Overview 3D View Sample Experiment Validation Volume Browser Additional data Links
Sample Organism: Escherichia coli
Sample: GroEL in complex with ATP under continuous turnover of ATP
Fitted models: 8bmd (Avg. Q-score: 0.434)
Raw data: EMPIAR-11481

Deposition Authors: Dhurandhar M , Torino S , Efremov R
Time-resolved cryo-EM using a combination of droplet microfluidics with on-demand jetting.
Torino S , Dhurandhar M , Stroobants A , Claessens R , Efremov RG
(2023) Nat Methods , 20 , 1400 - 1408
PUBMED: 37592181
DOI: doi:10.1038/s41592-023-01967-z
ISSN: 1548-7105
Abstract:
Single-particle cryogenic electron microscopy (cryo-EM) allows reconstruction of high-resolution structures of proteins in different conformations. Protein function often involves transient functional conformations, which can be resolved using time-resolved cryo-EM (trEM). In trEM, reactions are arrested after a defined delay time by rapid vitrification of protein solution on the EM grid. Despite the increasing interest in trEM among the cryo-EM community, making trEM samples with a time resolution below 100 ms remains challenging. Here we report the design and the realization of a time-resolved cryo-plunger that combines a droplet-based microfluidic mixer with a laser-induced generator of microjets that allows rapid reaction initiation and plunge-freezing of cryo-EM grids. Using this approach, a time resolution of 5 ms was achieved and the protein density map was reconstructed to a resolution of 2.1 Å. trEM experiments on GroEL:GroES chaperonin complex resolved the kinetics of the complex formation and visualized putative short-lived conformations of GroEL-ATP complex.