EMD-16233

Helical reconstruction
2.96 Å
EMD-16233 Deposition: 29/11/2022
Map released: 21/02/2024
Last modified: 03/04/2024
Overview 3D View Sample Experiment Validation Volume Browser Additional data Links
Overview 3D View Sample Experiment Validation Volume Browser Additional data Links

EMD-16233

Helical structure of BcThsA in complex with 1''-3'gcADPR

EMD-16233

Helical reconstruction
2.96 Å
EMD-16233 Deposition: 29/11/2022
Map released: 21/02/2024
Last modified: 03/04/2024
Overview 3D View Sample Experiment Validation Volume Browser Additional data Links
Sample Organism: Bacillus cereus, Bacillus cereus MSX-D12
Sample: BcThsA in complex with 1''-3'gcADPR
Fitted models: 8bto (Avg. Q-score: 0.535)

Deposition Authors: Tamulaitiene G , Sasnauskas G, Sabonis D
Activation of Thoeris antiviral system via SIR2 effector filament assembly.
PUBMED: 38383786
DOI: doi:10.1038/s41586-024-07092-x
ISSN: 1476-4687
ASTM: NATUAS
Abstract:
To survive bacteriophage (phage) infections, bacteria developed numerous anti-phage defence systems1-7. Some of them (for example, type III CRISPR-Cas, CBASS, Pycsar and Thoeris) consist of two modules: a sensor responsible for infection recognition and an effector that stops viral replication by destroying key cellular components8-12. In the Thoeris system, a Toll/interleukin-1 receptor (TIR)-domain protein, ThsB, acts as a sensor that synthesizes an isomer of cyclic ADP ribose, 1''-3' glycocyclic ADP ribose (gcADPR), which is bound in the Smf/DprA-LOG (SLOG) domain of the ThsA effector and activates the silent information regulator 2 (SIR2)-domain-mediated hydrolysis of a key cell metabolite, NAD+ (refs. 12-14). Although the structure of ThsA has been solved15, the ThsA activation mechanism remained incompletely understood. Here we show that 1''-3' gcADPR, synthesized in vitro by the dimeric ThsB' protein, binds to the ThsA SLOG domain, thereby activating ThsA by triggering helical filament assembly of ThsA tetramers. The cryogenic electron microscopy (cryo-EM) structure of activated ThsA revealed that filament assembly stabilizes the active conformation of the ThsA SIR2 domain, enabling rapid NAD+ depletion. Furthermore, we demonstrate that filament formation enables a switch-like response of ThsA to the 1''-3' gcADPR signal.