EMD-17245

Subtomogram averaging
8.4 Å
EMD-17245 Deposition: 28/04/2023
Map released: 27/12/2023
Last modified: 25/09/2024
Overview 3D View Sample Experiment Validation Volume Browser Additional data Links
Overview 3D View Sample Experiment Validation Volume Browser Additional data Links

EMD-17245

C. elegans L1 larva 80S ribosome class 4

EMD-17245

Subtomogram averaging
8.4 Å
EMD-17245 Deposition: 28/04/2023
Map released: 27/12/2023
Last modified: 25/09/2024
Overview 3D View Sample Experiment Validation Volume Browser Additional data Links
Sample Organism: Caenorhabditis elegans
Sample: C. elegans L1 larva, CGC strain NK2476

Deposition Authors: Schioetz OH, Kaiser CJO , Klumpe S , Beck F, Plitzko JM
Serial Lift-Out: sampling the molecular anatomy of whole organisms.
Schiotz OH , Kaiser CJO , Klumpe S , Morado DR, Poege M, Schneider J, Beck F, Klebl DP, Thompson C, Plitzko JM
(2024) Nat Methods , 21 , 1684 - 1692
PUBMED: 38110637
DOI: doi:10.1038/s41592-023-02113-5
ISSN: 1548-7105
Abstract:
Cryo-focused ion beam milling of frozen-hydrated cells and subsequent cryo-electron tomography (cryo-ET) has enabled the structural elucidation of macromolecular complexes directly inside cells. Application of the technique to multicellular organisms and tissues, however, is still limited by sample preparation. While high-pressure freezing enables the vitrification of thicker samples, it prolongs subsequent preparation due to increased thinning times and the need for extraction procedures. Additionally, thinning removes large portions of the specimen, restricting the imageable volume to the thickness of the final lamella, typically <300 nm. Here we introduce Serial Lift-Out, an enhanced lift-out technique that increases throughput and obtainable contextual information by preparing multiple sections from single transfers. We apply Serial Lift-Out to Caenorhabditis elegans L1 larvae, yielding a cryo-ET dataset sampling the worm's anterior-posterior axis, and resolve its ribosome structure to 7 Å and a subregion of the 11-protofilament microtubule to 13 Å, illustrating how Serial Lift-Out enables the study of multicellular molecular anatomy.