EMD-30161

Single-particle
4.5 Å
EMD-30161 Deposition: 30/03/2020
Map released: 23/12/2020
Last modified: 27/01/2021
Overview 3D View Sample Experiment Validation Volume Browser Additional data Links
Overview 3D View Sample Experiment Validation Volume Browser Additional data Links

EMD-30161

Linker Histone Defines Structure and Self-Association Behaviour of the 177 bp Human Chromatosome

EMD-30161

Single-particle
4.5 Å
EMD-30161 Deposition: 30/03/2020
Map released: 23/12/2020
Last modified: 27/01/2021
Overview 3D View Sample Experiment Validation Volume Browser Additional data Links
Sample Organism: Homo sapiens
Sample: ternary complex of 177bp nucleosome with linker histone H1
Fitted models: 7dbp (Avg. Q-score: 0.246)

Deposition Authors: Wang S, Vogirala VK, Soman A, Sandin S, Liu ZB
Linker histone defines structure and self-association behaviour of the 177 bp human chromatosome.
PUBMED: 33432055
DOI: doi:10.1038/s41598-020-79654-8
ISSN: 2045-2322
Abstract:
Linker histones play essential roles in the regulation and maintenance of the dynamic chromatin structure of higher eukaryotes. The influence of human histone H1.0 on the nucleosome structure and biophysical properties of the resulting chromatosome were investigated and compared with the 177-bp nucleosome using Cryo-EM and SAXS. The 4.5 Å Cryo-EM chromatosome structure showed that the linker histone binds at the nucleosome dyad interacting with both linker DNA arms but in a tilted manner leaning towards one of the linker sides. The chromatosome is laterally compacted and rigid in the dyad and linker DNA area, in comparison with the nucleosome where linker DNA region is more flexible and displays structural variability. In solution, the chromatosomes appear slightly larger than the nucleosomes, with the volume increase compared to the bound linker histone, according to solution SAXS measurements. SAXS X-ray diffraction characterisation of Mg-precipitated samples showed that the different shapes of the 177 chromatosome enabled the formation of a highly ordered lamello-columnar phase when precipitated by Mg2+, indicating the influence of linker histone on the nucleosome stacking. The biological significance of linker histone, therefore, may be affected by the change in the polyelectrolyte and DNA conformation properties of the chromatosomes, in comparison to nucleosomes.