EMD-30655

Single-particle
3.4 Å
EMD-30655 Deposition: 29/10/2020
Map released: 19/05/2021
Last modified: 13/11/2024
Overview 3D View Sample Experiment Validation Volume Browser Additional data Links
Overview 3D View Sample Experiment Validation Volume Browser Additional data Links

EMD-30655

Cryo-EM structure of human ACE2 and GD/1/2019 RBD

EMD-30655

Single-particle
3.4 Å
EMD-30655 Deposition: 29/10/2020
Map released: 19/05/2021
Last modified: 13/11/2024
Overview 3D View Sample Experiment Validation Volume Browser Additional data Links
Sample Organism: Homo sapiens, Pangolin coronavirus
Sample: Cryo-EM structure of human ACE2 and GD/1/2019 RBD
Fitted models: 7ddo (Avg. Q-score: 0.487)

Deposition Authors: Niu S , Wang J, Wang HW , Qi JX, Wang QH, Gao GF
Molecular basis of cross-species ACE2 interactions with SARS-CoV-2-like viruses of pangolin origin.
Niu S , Wang J, Bai B, Wu L, Zheng A, Chen Q, Du P, Han P, Zhang Y, Jia Y, Qiao C, Qi J, Tian WX , Wang HW , Wang Q , Gao GF
(2021) EMBO J , 40 , e107786 - e107786
PUBMED: 34018203
DOI: doi:10.15252/embj.2021107786
ISSN: 1460-2075
ASTM: EMJODG
Abstract:
Pangolins have been suggested as potential reservoir of zoonotic viruses, including SARS-CoV-2 causing the global COVID-19 outbreak. Here, we study the binding of two SARS-CoV-2-like viruses isolated from pangolins, GX/P2V/2017 and GD/1/2019, to human angiotensin-converting enzyme 2 (hACE2), the receptor of SARS-CoV-2. We find that the spike protein receptor-binding domain (RBD) of pangolin CoVs binds to hACE2 as efficiently as the SARS-CoV-2 RBD in vitro. Furthermore, incorporation of pangolin CoV RBDs allows entry of pseudotyped VSV particles into hACE2-expressing cells. A screen for binding of pangolin CoV RBDs to ACE2 orthologs from various species suggests a broader host range than that of SARS-CoV-2. Additionally, cryo-EM structures of GX/P2V/2017 and GD/1/2019 RBDs in complex with hACE2 show their molecular binding in modes similar to SARS-CoV-2 RBD. Introducing the Q498H substitution found in pangolin CoVs into the SARS-CoV-2 RBD expands its binding capacity to ACE2 homologs of mouse, rat, and European hedgehog. These findings suggest that these two pangolin CoVs may infect humans, highlighting the necessity of further surveillance of pangolin CoVs.