EMD-31491
Cryo-EM structure of the C-terminal deletion mutant of human PANX1 in a nanodisc
EMD-31491
Single-particle3.6 Å

Map released: 26/01/2022
Last modified: 20/11/2024
Sample Organism:
Homo sapiens
Sample: heptamar of human pannexin-1 channel in a nanodisc
Fitted models: 7f8o (Avg. Q-score: 0.444)
Raw data: EMPIAR-10759
Deposition Authors: Kuzuya M
,
Hirano H
Sample: heptamar of human pannexin-1 channel in a nanodisc
Fitted models: 7f8o (Avg. Q-score: 0.444)
Raw data: EMPIAR-10759
Deposition Authors: Kuzuya M

Structures of human pannexin-1 in nanodiscs reveal gating mediated by dynamic movement of the N terminus and phospholipids.
Kuzuya M
,
Hirano H,
Hayashida K,
Watanabe M
,
Kobayashi K,
Terada T
,
Mahmood MI
,
Tama F
,
Tani K
,
Fujiyoshi Y
,
Oshima A
(2022) Sci Signal , 15 , eabg6941 - eabg6941








(2022) Sci Signal , 15 , eabg6941 - eabg6941
Abstract:
Pannexin (PANX) family proteins form large-pore channels that mediate purinergic signaling. We analyzed the cryo-EM structures of human PANX1 in lipid nanodiscs to elucidate the gating mechanism and its regulation by the amino terminus in phospholipids. The wild-type channel has an amino-terminal funnel in the pore, but in the presence of the inhibitor probenecid, a cytoplasmically oriented amino terminus and phospholipids obstruct the pore. Functional analysis using whole-cell patch-clamp and oocyte voltage clamp showed that PANX1 lacking the amino terminus did not open and had a dominant negative effect on channel activity, thus confirming that the amino-terminal domain played an essential role in channel opening. These observations suggest that dynamic conformational changes in the amino terminus of human PANX1 are associated with lipid movement in and out of the pore. Moreover, the data provide insight into the gating mechanism of PANX1 and, more broadly, other large-pore channels.
Pannexin (PANX) family proteins form large-pore channels that mediate purinergic signaling. We analyzed the cryo-EM structures of human PANX1 in lipid nanodiscs to elucidate the gating mechanism and its regulation by the amino terminus in phospholipids. The wild-type channel has an amino-terminal funnel in the pore, but in the presence of the inhibitor probenecid, a cytoplasmically oriented amino terminus and phospholipids obstruct the pore. Functional analysis using whole-cell patch-clamp and oocyte voltage clamp showed that PANX1 lacking the amino terminus did not open and had a dominant negative effect on channel activity, thus confirming that the amino-terminal domain played an essential role in channel opening. These observations suggest that dynamic conformational changes in the amino terminus of human PANX1 are associated with lipid movement in and out of the pore. Moreover, the data provide insight into the gating mechanism of PANX1 and, more broadly, other large-pore channels.