EMD-31491

Single-particle
3.6 Å
EMD-31491 Deposition: 02/07/2021
Map released: 26/01/2022
Last modified: 20/11/2024
Overview 3D View Sample Experiment Validation Volume Browser Additional data Links
Overview 3D View Sample Experiment Validation Volume Browser Additional data Links

EMD-31491

Cryo-EM structure of the C-terminal deletion mutant of human PANX1 in a nanodisc

EMD-31491

Single-particle
3.6 Å
EMD-31491 Deposition: 02/07/2021
Map released: 26/01/2022
Last modified: 20/11/2024
Overview 3D View Sample Experiment Validation Volume Browser Additional data Links
Sample Organism: Homo sapiens
Sample: heptamar of human pannexin-1 channel in a nanodisc
Fitted models: 7f8o (Avg. Q-score: 0.444)
Raw data: EMPIAR-10759

Deposition Authors: Kuzuya M , Hirano H
Structures of human pannexin-1 in nanodiscs reveal gating mediated by dynamic movement of the N terminus and phospholipids.
Kuzuya M , Hirano H, Hayashida K, Watanabe M , Kobayashi K, Terada T , Mahmood MI , Tama F , Tani K , Fujiyoshi Y , Oshima A
(2022) Sci Signal , 15 , eabg6941 - eabg6941
PUBMED: 35133866
DOI: doi:10.1126/scisignal.abg6941
ISSN: 1937-9145
Abstract:
Pannexin (PANX) family proteins form large-pore channels that mediate purinergic signaling. We analyzed the cryo-EM structures of human PANX1 in lipid nanodiscs to elucidate the gating mechanism and its regulation by the amino terminus in phospholipids. The wild-type channel has an amino-terminal funnel in the pore, but in the presence of the inhibitor probenecid, a cytoplasmically oriented amino terminus and phospholipids obstruct the pore. Functional analysis using whole-cell patch-clamp and oocyte voltage clamp showed that PANX1 lacking the amino terminus did not open and had a dominant negative effect on channel activity, thus confirming that the amino-terminal domain played an essential role in channel opening. These observations suggest that dynamic conformational changes in the amino terminus of human PANX1 are associated with lipid movement in and out of the pore. Moreover, the data provide insight into the gating mechanism of PANX1 and, more broadly, other large-pore channels.