EMD-23011
Structural impact on SARS-CoV-2 spike protein by D614G substitution
EMD-23011
Single-particle3.5 Å

Map released: 24/03/2021
Last modified: 13/11/2024
Sample Organism:
Severe acute respiratory syndrome coronavirus 2
Sample: open state( one RBD up) of pre-fusion SARS-CoV-2 D614G mutant spike glycoprotein
Fitted models: 7krr (Avg. Q-score: 0.401)
Deposition Authors: Zhang J
,
Cai YF
Sample: open state( one RBD up) of pre-fusion SARS-CoV-2 D614G mutant spike glycoprotein
Fitted models: 7krr (Avg. Q-score: 0.401)
Deposition Authors: Zhang J

Structural impact on SARS-CoV-2 spike protein by D614G substitution.
Zhang J
,
Cai Y
,
Xiao T
,
Lu J,
Peng H
,
Sterling SM
,
Walsh Jr RM
,
Rits-Volloch S,
Zhu H
,
Woosley AN,
Yang W
,
Sliz P
,
Chen B
(2021) Science , 372 , 525 - 530










(2021) Science , 372 , 525 - 530
Abstract:
Substitution for aspartic acid (D) by glycine (G) at position 614 in the spike (S) protein of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) appears to facilitate rapid viral spread. The G614 strain and its recent variants are now the dominant circulating forms. Here, we report cryo-electron microscopy structures of a full-length G614 S trimer, which adopts three distinct prefusion conformations that differ primarily by the position of one receptor-binding domain. A loop disordered in the D614 S trimer wedges between domains within a protomer in the G614 spike. This added interaction appears to prevent premature dissociation of the G614 trimer-effectively increasing the number of functional spikes and enhancing infectivity-and to modulate structural rearrangements for membrane fusion. These findings extend our understanding of viral entry and suggest an improved immunogen for vaccine development.
Substitution for aspartic acid (D) by glycine (G) at position 614 in the spike (S) protein of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) appears to facilitate rapid viral spread. The G614 strain and its recent variants are now the dominant circulating forms. Here, we report cryo-electron microscopy structures of a full-length G614 S trimer, which adopts three distinct prefusion conformations that differ primarily by the position of one receptor-binding domain. A loop disordered in the D614 S trimer wedges between domains within a protomer in the G614 spike. This added interaction appears to prevent premature dissociation of the G614 trimer-effectively increasing the number of functional spikes and enhancing infectivity-and to modulate structural rearrangements for membrane fusion. These findings extend our understanding of viral entry and suggest an improved immunogen for vaccine development.