Electron Microscopy Data Bank

EMD-20526

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CryoEM Structure of Pyocin R2 - precontracted - trunk

Release date: April 15, 2020
Resolution: 2.9 Å
EM Method: Helical reconstruction
Fitted PDBs: 6pyt
Q-score: 0.549

Ge P, Scholl D, Prokhorov NS, Avaylon J, Shneider MM, Browning C, Buth SA, Plattner M, Chakraborty U, Ding K, Leiman PG, Miller JF, Zhou ZH

Nature (2020) 580 pp. 658-662 [ DOI: doi:10.1038/s41586-020-2186-z Pubmed: 32350467 ]

Sample:

Pyocin r2 (Cellular component from Pseudomonas aeruginosa PAO1)
Pyocin tube pa0623 (17 kDa, Protein from Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1))
Pyocin sheath pa0622 (41 kDa, Protein from Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1))

EMD-20643

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CryoEM Structure of Pyocin R2 - precontracted - baseplate

Release date: April 15, 2020
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 6u5b
Q-score: 0.448

Ge P, Scholl D, Prokhorov NS, Avaylon J, Shneider MM, Browning C, Buth SA, Plattner M, Chakraborty U, Ding K, Leiman PG, Miller JF, Zhou ZH

Nature (2020) 580 pp. 658-662 [ DOI: doi:10.1038/s41586-020-2186-z Pubmed: 32350467 ]

Sample:

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EMD-20644

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CryoEM Structure of Pyocin R2 - precontracted - collar

Release date: April 15, 2020
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 6u5f
Q-score: 0.464

Ge P, Scholl D, Prokhorov NS, Avaylon J, Shneider MM, Browning C, Buth SA, Plattner M, Chakraborty U, Ding K, Leiman PG, Miller JF, Zhou ZH

Nature (2020) 580 pp. 658-662 [ DOI: doi:10.1038/s41586-020-2186-z Pubmed: 32350467 ]

Sample:

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EMD-20646

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CryoEM Structure of Pyocin R2 - precontracted - hub

Release date: April 15, 2020
Resolution: 4.0 Å
EM Method: Single-particle
Fitted PDBs: 6u5h
Q-score: 0.356

Ge P, Scholl D, Prokhorov NS, Avaylon J, Shneider MM, Browning C, Buth SA, Plattner M, Chakraborty U, Ding K, Leiman PG, Miller JF, Zhou ZH

Nature (2020) 580 pp. 658-662 [ DOI: doi:10.1038/s41586-020-2186-z Pubmed: 32350467 ]

Sample:

EMD-20647

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CryoEM Structure of Pyocin R2 - postcontracted - collar

Release date: April 15, 2020
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 6u5j
Q-score: 0.484

Ge P, Scholl D, Prokhorov NS, Avaylon J, Shneider MM, Browning C, Buth SA, Plattner M, Chakraborty U, Ding K, Leiman PG, Miller JF, Zhou ZH

Nature (2020) 580 pp. 658-662 [ DOI: doi:10.1038/s41586-020-2186-z Pubmed: 32350467 ]

Sample:

EMD-20648

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CryoEM Structure of Pyocin R2 - postcontracted - baseplate

Release date: April 15, 2020
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 6u5k
Q-score: 0.384

Ge P, Scholl D, Prokhorov NS, Avaylon J, Shneider MM, Browning C, Buth SA, Plattner M, Chakraborty U, Ding K, Leiman PG, Miller JF, Zhou ZH

Nature (2020) 580 pp. 658-662 [ DOI: doi:10.1038/s41586-020-2186-z Pubmed: 32350467 ]

Sample:

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EMD-3374

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Cryo-electron microscopy structure of the hexagonal pre-attachment T4 baseplate-tail tube complex

Release date: May 18, 2016
Resolution: 4.11 Å
EM Method: Single-particle
Fitted PDBs: 5iv5
Q-score: 0.312

Taylor NMI, Prokhorov NS, Guerrero-Ferreira RC, Shneider MM, Browning C, Goldie KN, Stahlberg H, Leiman P

Nature (2016) [ DOI: doi:10.1038/nature17971 ]

Sample:

Hexagonal pre-attachment t4 baseplate-tail tube complex (8 MDa, Sample)
Hexagonal pre-attachment t4 baseplate-tail tube complex (8 MDa, Protein from Enterobacteria phage T4)

EMD-3392

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Cryo-electron microscopy structure of the hexagonal pre-attachment T4 baseplate-tail tube complex: locally masked refinement of the inner baseplate

Release date: May 18, 2016
Resolution: 3.83 Å
EM Method: Single-particle

Taylor NMI, Prokhorov NS, Guerrero-Ferreira RC, Shneider MM, Browning C, Goldie KN, Stahlberg H, Leiman PG

Nature (2016) [ DOI: doi:10.1038/nature17971 ]

Sample:

Hexagonal pre-attachment t4 baseplate-tail tube complex (8 MDa, Sample)
Hexagonal pre-attachment t4 baseplate-tail tube complex (8 MDa, Protein from Enterobacteria phage T4)

EMD-3393

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Cryo-electron microscopy structure of the hexagonal pre-attachment T4 baseplate-tail tube complex: locally masked refinement of the intermediate baseplate

Release date: May 18, 2016
Resolution: 4.19 Å
EM Method: Single-particle

Taylor NMI, Prokhorov NS, Guerrero-Ferreira RC, Shneider MM, Browning C, Goldie KN, Stahlberg H, Leiman PG

Nature (2016) [ DOI: doi:10.1038/nature17971 ]

Sample:

Hexagonal pre-attachment t4 baseplate-tail tube complex (8 MDa, Protein from Enterobacteria phage T4)
Hexagonal pre-attachment t4 baseplate-tail tube complex (8 MDa, Sample)

EMD-3394

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Cryo-electron microscopy structure of the hexagonal pre-attachment T4 baseplate-tail tube complex: locally masked refinement of the upper peripheral baseplate

Release date: May 18, 2016
Resolution: 4.55 Å
EM Method: Single-particle

Taylor NMI, Prokhorov NS, Guerrero-Ferreira RC, Shneider MM, Browning C, Goldie KN, Stahlberg H, Leiman PG

Nature (2016) [ DOI: doi:10.1038/nature17971 ]

Sample:

Hexagonal pre-attachment t4 baseplate-tail tube complex (8 MDa, Sample)
Hexagonal pre-attachment t4 baseplate-tail tube complex (8 MDa, Protein from Enterobacteria phage T4)

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