Salmonella LP ring 26 mer refined in C26 map
Resolution: 2.2 Å
EM Method: Single-particle
Fitted PDBs: 7bgl
Q-score: 0.603
Johnson S, Furlong EJ, Deme JC, Nord AL, Caesar JJE, Chevance FFV, Berry RM, Hughes KT, Lea SM
Nat Microbiol (2021) 6 pp. 712-721 [ DOI: doi:10.1038/s41564-021-00895-y Pubmed: 33931760 ]
- Flagellar p-ring protein (38 kDa, Protein from Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720))
- Flagellar lp ring (Complex from Salmonella enterica subsp. enterica serovar Typhi)
- Yecr (12 kDa, Protein from Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720))
- (2~{r},4~{r},5~{r},6~{r})-6-[(1~{r})-1,2-bis(oxidanyl)ethyl]-4,5-bis(oxidanyl)oxane-2-carboxylic acid (222 Da, Ligand)
- [(3~{r})-1-[[(2~{r},3~{r},4~{r},5~{s},6~{r})-6-[[(2~{r},3~{r},4~{r},5~{s},6~{r})-3-[[(3~{r})-3-dodecanoyloxytetradecanoyl]amino]-6-(hydroxymethyl)-5-phosphonooxy-4-[(3~{r})-3-tetradecanoyloxytetradecanoyl]oxy-oxan-2-yl]oxymethyl]-5-oxidanyl-4-[(3~{r})-3-oxidanyltetradecanoyl]oxy-2-phosphonooxy-oxan-3-yl]amino]-1-oxidanylidene-tetradecan-3-yl] hexadecanoate (2 kDa, Ligand)
- Flagellar l-ring protein (24 kDa, Protein from Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720))
In situ assembled Salmonella FlgD hook cap complex
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 7bhq
Q-score: 0.16
Johnson S, Furlong EJ, Deme JC, Nord AL, Caesar JJE, Chevance FFV, Berry RM, Hughes KT, Lea SM
Nat Microbiol (2021) 6 pp. 712-721 [ DOI: doi:10.1038/s41564-021-00895-y Pubmed: 33931760 ]
Salmonella export gate and rod refined in focussed C1 map
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 7bin
Q-score: 0.434
Johnson S, Furlong EJ, Deme JC, Nord AL, Caesar JJE, Chevance FFV, Berry RM, Hughes KT, Lea SM
Nat Microbiol (2021) 6 pp. 712-721 [ DOI: doi:10.1038/s41564-021-00895-y Pubmed: 33931760 ]
- Flagellar basal-body rod protein flgc (13 kDa, Protein from Salmonella enterica subsp. enterica serovar Typhi)
- Flagellar basal-body rod protein flgg (27 kDa, Protein from Salmonella enterica subsp. enterica serovar Typhi)
- Flagellar biosynthetic protein fliq (9 kDa, Protein from Salmonella enterica subsp. enterica serovar Typhi)
- Flagellar basal-body rod protein flgf (26 kDa, Protein from Salmonella enterica subsp. enterica serovar Typhi)
- Flagellar basal body rod protein flgb (15 kDa, Protein from Salmonella enterica subsp. enterica serovar Typhi)
- Flagellar biosynthetic protein flir (28 kDa, Protein from Salmonella enterica subsp. enterica serovar Typhi)
- Flagellar biosynthetic protein flip (26 kDa, Protein from Salmonella typhi)
- Flagellar lp ring (Complex from Salmonella enterica subsp. enterica serovar Typhi)
- Flagellar hook-basal body complex protein flie (11 kDa, Protein from Salmonella enterica subsp. enterica serovar Typhi)
Salmonella flagellar basal body assembly intermediate - P ring alone structure
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 7bj2
Q-score: 0.524
Johnson S, Furlong EJ, Deme JC, Nord AL, Caesar JJE, Chevance FFV, Berry RM, Hughes KT, Lea SM
Nat Microbiol (2021) 6 pp. 712-721 [ DOI: doi:10.1038/s41564-021-00895-y Pubmed: 33931760 ]
Salmonella FliF ring (34mer) in intact basal body - C1
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 7bk0
Q-score: 0.432
Johnson S, Furlong EJ, Deme JC, Nord AL, Caesar JJE, Chevance FFV, Berry RM, Hughes KT, Lea SM
Nat Microbiol (2021) 6 pp. 712-721 [ DOI: doi:10.1038/s41564-021-00895-y Pubmed: 33931760 ]
Salmonella flagellar basal body refined in C1 map
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 7nvg
Q-score: 0.26
Johnson S, Furlong EJ, Deme JC, Nord AL, Caesar JJE, Chevance FFV, Berry RM, Hughes KT, Lea SM
Nat Microbiol (2021) 6 pp. 712-721 [ DOI: doi:10.1038/s41564-021-00895-y Pubmed: 33931760 ]
- Flagellar p-ring protein (38 kDa, Protein from Salmonella enterica subsp. enterica serovar Typhimurium)
- Flagellar biosynthetic protein flip (26 kDa, Protein from Salmonella enterica subsp. enterica serovar Typhimurium)
- Flagellar m-ring protein (61 kDa, Protein from Salmonella enterica subsp. enterica serovar Typhimurium)
- Flagellar basal body rod protein flgb (15 kDa, Protein from Salmonella enterica subsp. enterica serovar Typhimurium)
- Flagellar biosynthetic protein flir (28 kDa, Protein from Salmonella enterica subsp. enterica serovar Typhimurium)
- Flagellar hook-basal body complex protein flie (11 kDa, Protein from Salmonella enterica subsp. enterica serovar Typhimurium)
- Flagellar basal body protein (26 kDa, Protein from Salmonella enterica subsp. enterica serovar Typhimurium)
- Salmonella flagellar basal body (Complex from Salmonella enterica subsp. enterica serovar Typhimurium)
- Flagellar biosynthetic protein fliq (9 kDa, Protein from Salmonella enterica subsp. enterica serovar Typhimurium)
- Flagellar basal-body rod protein flgc (13 kDa, Protein from Salmonella enterica subsp. enterica serovar Typhimurium)
- Flagellar basal-body rod protein flgg (27 kDa, Protein from Salmonella enterica subsp. enterica serovar Typhimurium)
- Basal-body rod modification protein flgd (24 kDa, Protein from Salmonella enterica subsp. enterica serovar Typhimurium)
- Flagellar l-ring protein (24 kDa, Protein from Salmonella enterica subsp. enterica serovar Typhimurium)
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 6oqw
Q-score: 0.487
Sobti M, Walshe JL, Wu D, Ishmukhametov R, Zeng YC, Robinson CV, Berry RM, Stewart AG
Nat Commun (2020) 11 pp. 2615-2615 [ Pubmed: 32457314 DOI: doi:10.1038/s41467-020-16387-2 ]
- Atp synthase subunit c (8 kDa, Protein from Escherichia coli)
- Atp synthase subunit alpha (55 kDa, Protein from Escherichia coli 2-427-07 S4 C3)
- Atp synthase subunit b (17 kDa, Protein from Escherichia coli 2-427-07 S4 C3)
- Atp synthase gamma chain (31 kDa, Protein from Escherichia coli chi7122)
- Atp synthase subunit beta (51 kDa, Protein from Escherichia coli Xuzhou21)
- Atp synthase subunit a (30 kDa, Protein from Escherichia coli)
- Atp synthase epsilon chain (15 kDa, Protein from Escherichia coli O145:NM)
- E. coli atp synthase (558 kDa, Complex from Escherichia coli)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Atp synthase subunit delta (19 kDa, Protein from Escherichia coli)
- Phosphate ion (94 Da, Ligand)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
E. coli ATP Synthase ADP State 1a
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 6oqr
Q-score: 0.515
Sobti M, Walshe JL, Wu D, Ishmukhametov R, Zeng YC, Robinson CV, Berry RM, Stewart AG
Nat Commun (2020) 11 pp. 2615-2615 [ Pubmed: 32457314 DOI: doi:10.1038/s41467-020-16387-2 ]
- Atp synthase subunit c (8 kDa, Protein from Escherichia coli)
- Atp synthase subunit beta (51 kDa, Protein from Escherichia coli)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Atp synthase subunit a (30 kDa, Protein from Escherichia coli)
- Atp synthase subunit alpha (55 kDa, Protein from Escherichia coli )
- Atp synthase subunit b (17 kDa, Protein from Escherichia coli )
- Atp synthase subunit delta (19 kDa, Protein from Escherichia coli)
- Atp synthase epsilon chain (15 kDa, Protein from Escherichia coli)
- E. coli atp synthase (558 kDa, Complex from Escherichia coli)
- Phosphate ion (94 Da, Ligand)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
- Atp synthase gamma chain (31 kDa, Protein from Escherichia coli)
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 6oqs
Q-score: 0.49
Sobti M, Walshe JL, Wu D, Ishmukhametov R, Zeng YC, Robinson CV, Berry RM, Stewart AG
Nat Commun (2020) 11 pp. 2615-2615 [ DOI: doi:10.1038/s41467-020-16387-2 Pubmed: 32457314 ]
- Atp synthase gamma chain (31 kDa, Protein from Escherichia coli )
- Atp synthase subunit a (30 kDa, Protein from Escherichia coli)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Atp synthase subunit alpha (55 kDa, Protein from Escherichia coli )
- Atp synthase subunit c (8 kDa, Protein from Escherichia coli)
- Magnesium ion (24 Da, Ligand)
- Atp synthase subunit delta (19 kDa, Protein from Escherichia coli)
- Atp synthase epsilon chain (15 kDa, Protein from Escherichia coli )
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Atp synthase subunit b (17 kDa, Protein from Escherichia coli)
- E. coli atp synthase (558 kDa, Complex from Escherichia coli)
- Phosphate ion (94 Da, Ligand)
- Atp synthase subunit beta (51 kDa, Protein from Escherichia coli )
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 6oqt
Q-score: 0.531
Sobti M, Walshe JL, Wu D, Ishmukhametov R, Zeng YC, Robinson CV, Berry RM, Stewart AG
Nat Commun (2020) 11 pp. 2615-2615 [ DOI: doi:10.1038/s41467-020-16387-2 Pubmed: 32457314 ]
- Atp synthase epsilon chain (15 kDa, Protein from Escherichia coli)
- Atp synthase subunit a (30 kDa, Protein from Escherichia coli)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Atp synthase subunit c (8 kDa, Protein from Escherichia coli)
- Magnesium ion (24 Da, Ligand)
- Atp synthase subunit b (17 kDa, Protein from Escherichia coli)
- Atp synthase subunit delta (19 kDa, Protein from Escherichia coli)
- Atp synthase subunit alpha (55 kDa, Protein from Escherichia coli)
- Atp synthase subunit beta (51 kDa, Protein from Escherichia coli)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Atp synthase gamma chain (31 kDa, Protein from Escherichia coli)
- E. coli atp synthase (558 kDa, Complex from Escherichia coli)
- Phosphate ion (94 Da, Ligand)