EMDB < Search results

EMBL

was set up in 1974 as Europe’s flagship laboratory for the life sciences – an intergovernmental organisation with more than 80 independent research groups covering the spectrum of molecular biology:

Research:

perform basic research in molecular biology

Services:

offer vital services to scientists in the member states

Training

scientists, students and visitors at all levels

Transfer

and development of technology

Develop

new instruments and methods

Integrating

life science research in Europe

More about EMBL

Six sites

represent EMBL in Europe.

Barcelona

Tissue biology and disease modelling

Grenoble

Structural biology

Hamburg

Structural biology

Heidelberg

Main laboratory

Hinxton

EMBL-EBI: European Bioinformatics Institute

Rome

Epigenetics and neurobiology

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author:"Cao M" AND sample_type:"ligand" AND author_name:"Liu Y"

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EMDB [2]

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EMD-31039

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Yeast Set2 bound to a nucleosome containing oncohistone mutations

Release date: July 14, 2021
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 7ea5
Q-score: 0.473

Liu Y, Zhang Y, Xue H, Cao M, Bai G, Mu Z, Yao Y, Sun S, Fang D, Huang J

Cell Discov (2021) 7 pp. 32-32 [ Pubmed: 33972509 DOI: doi:10.1038/s41421-021-00261-6 ]

Sample:

Histone h4 (8 kDa, Protein from Xenopus laevis)
S-adenosylmethionine (398 Da, Ligand)
The set2-nucleosome(h3k36m)complex structure (Complex from Xenopus laevis)
601-dna (44 kDa, DNA from synthetic construct)
Histone h2b (10 kDa, Protein from Xenopus laevis)
Histone h2a (11 kDa, Protein from Xenopus laevis)
Histone h3 (11 kDa, Protein from Xenopus laevis)
Zinc ion (65 Da, Ligand)
601-dna (44 kDa, DNA from synthetic construct)
Histone-lysine n-methyltransferase, h3 lysine-36 specific (26 kDa, Protein from Saccharomyces cerevisiae)

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EMD-31040

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Human SETD2 bound to a nucleosome containing oncohistone mutations

Release date: July 14, 2021
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 7ea8
Q-score: 0.509

Liu Y, Zhang Y, Xue H, Cao M, Bai G, Mu Z, Yao Y, Sun S, Fang D, Huang J

Cell Discov (2021) 7 pp. 32-32 [ DOI: doi:10.1038/s41421-021-00261-6 Pubmed: 33972509 ]

Sample:

Histone-lysine n-methyltransferase setd2 (28 kDa, Protein from Homo sapiens)
Histone h4 (8 kDa, Protein from Homo sapiens)
Histone-lysine n-methyltransferase setd2 (Complex from Homo sapiens)
Human setd2-ncp(h3.3k36m)-sam complex structure (Complex from Homo sapiens)
Histone h2b type 2-e (13 kDa, Protein from Homo sapiens)
601-dna (37 kDa, DNA from synthetic construct)
Zinc ion (65 Da, Ligand)
S-adenosylmethionine (398 Da, Ligand)
Histone (Complex)
601-dna (37 kDa, DNA from synthetic construct)
Histone h3.3 (11 kDa, Protein from Homo sapiens)
Dna (Complex)
Histone h2a type 1-d (11 kDa, Protein from Homo sapiens)

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EMDB [2]

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