Yeast Set2 bound to a nucleosome containing oncohistone mutations
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 7ea5
Q-score: 0.473
Liu Y, Zhang Y, Xue H, Cao M, Bai G, Mu Z, Yao Y, Sun S, Fang D, Huang J
Cell Discov (2021) 7 pp. 32-32 [ Pubmed: 33972509 DOI: doi:10.1038/s41421-021-00261-6 ]
- Histone h4 (8 kDa, Protein from Xenopus laevis)
- S-adenosylmethionine (398 Da, Ligand)
- The set2-nucleosome(h3k36m)complex structure (Complex from Xenopus laevis)
- 601-dna (44 kDa, DNA from synthetic construct)
- Histone h2b (10 kDa, Protein from Xenopus laevis)
- Histone h2a (11 kDa, Protein from Xenopus laevis)
- Histone h3 (11 kDa, Protein from Xenopus laevis)
- Zinc ion (65 Da, Ligand)
- 601-dna (44 kDa, DNA from synthetic construct)
- Histone-lysine n-methyltransferase, h3 lysine-36 specific (26 kDa, Protein from Saccharomyces cerevisiae)
Cryo-EM structure of yeast Ribonuclease MRP
Resolution: 2.5 Å
EM Method: Single-particle
Fitted PDBs: 7c79
Q-score: 0.402
Lan P, Zhou B, Tan M, Li S, Cao M, Wu J, Lei M
Science (2020) 369 pp. 656-663 [ Pubmed: 32586950 DOI: doi:10.1126/science.abc0149 ]
- Ribonuclease mrp protein subunit rmp1 (23 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Ribonucleases p/mrp protein subunit pop3 (22 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Ribonuclease mrp rna subunit nme1 (108 kDa, RNA from Saccharomyces cerevisiae S288C)
- Magnesium ion (24 Da, Ligand)
- Ribonucleases p/mrp protein subunit pop1 (100 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Ribonucleases p/mrp protein subunit pop6 (18 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Ribonucleases p/mrp protein subunit pop7 (15 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Ribonuclease mrp (Complex from Saccharomyces cerevisiae)
- Ribonuclease p/mrp protein subunit rpp1 (32 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Ribonucleases p/mrp protein subunit pop8 (15 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Ribonuclease mrp protein subunit snm1 (22 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Zinc ion (65 Da, Ligand)
- Rnases mrp/p 32.9 kda subunit (32 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Ribonuclease p/mrp protein subunit pop5 (19 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Cryo-EM structure of yeast Ribonuclease MRP with substrate ITS1
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 7c7a
Q-score: 0.404
Lan P, Zhou B, Tan M, Li S, Cao M, Wu J, Lei M
Science (2020) 369 pp. 656-663 [ Pubmed: 32586950 DOI: doi:10.1126/science.abc0149 ]
- Internal transcribed spacer 1 (6 kDa, RNA from Saccharomyces cerevisiae)
- Ribonucleases p/mrp protein subunit pop3 (22 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Ribonuclease mrp rna subunit nme1 (108 kDa, RNA from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Zinc ion (65 Da, Ligand)
- Ribonuclease mrp protein subunit snm1 (22 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Ribonuclease p/mrp protein subunit pop5 (19 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Ribonucleases p/mrp protein subunit pop8 (15 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Magnesium ion (24 Da, Ligand)
- Rnases mrp/p 32.9 kda subunit (32 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Ribonucleases p/mrp protein subunit pop1 (100 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Ribonuclease mrp with substrate its1 (Complex from Saccharomyces cerevisiae)
- Ribonucleases p/mrp protein subunit pop7 (15 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Ribonucleases p/mrp protein subunit pop6 (18 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Ribonuclease mrp protein subunit rmp1 (23 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Ribonuclease p/mrp protein subunit rpp1 (32 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))