The cryo-EM structure of human sphingomyelin synthase-related protein in complex with ceramide
Resolution: 3.45 Å
EM Method: Single-particle
Fitted PDBs: 8ijq
Q-score: 0.461
Resolution: 3.29 Å
EM Method: Single-particle
Fitted PDBs: 8ijr
Q-score: 0.485
Hu K, Zhang Q, Chen Y, Yang J, Xia Y, Rao B, Li S, Shen Y, Cao M, Lu H, Qin A, Jiang XC, Yao D, Zhao J, Zhou L, Cao Y
Nat Struct Mol Biol (2024) 31 pp. 884-895 [ DOI: doi:10.1038/s41594-024-01237-2 Pubmed: 38388831 ]
- Sphingomyelin synthase-related protein 1 (48 kDa, Protein from Homo sapiens)
- (2s)-1-(hexadecanoyloxy)-3-hydroxypropan-2-yl (11z)-octadec-11-enoate (594 Da, Ligand)
- The cryo-em structure of human sphingomyelin synthase-related protein in complex with diacylglycerol/phosphoethanolamine (Complex from Homo sapiens)
- Phosphoric acid mono-(2-amino-ethyl) ester (141 Da, Ligand)
Resolution: 3.74 Å
EM Method: Single-particle
Fitted PDBs: 8w9w
Q-score: 0.377
Hu K, Zhang Q, Chen Y, Yang J, Xia Y, Rao B, Li S, Shen Y, Cao M, Lu H, Qin A, Jiang XC, Yao D, Zhao J, Zhou L, Cao Y
Nat Struct Mol Biol (2024) 31 pp. 884-895 [ DOI: doi:10.1038/s41594-024-01237-2 Pubmed: 38388831 ]
- ~{n}-[(~{z},2~{s},3~{r})-1,3-bis(oxidanyl)heptadec-4-en-2-yl]dodecanamide (467 Da, Ligand)
- Sphingomyelin synthase-related protein 1 (31 kDa, Protein from Homo sapiens)
- Phosphoric acid mono-(2-amino-ethyl) ester (141 Da, Ligand)
- The cryo-em structure of human sphingomyelin synthase-related protein in complex with ceramide/phosphoethanolamine (Complex from Homo sapiens)
The cryo-EM structure of human ERAD retro-translocation complex
Resolution: 3.67 Å
EM Method: Single-particle
Fitted PDBs: 7y4w
Q-score: 0.367
Rao B, Wang Q, Yao D, Xia Y, Li W, Xie Y, Li S, Cao M, Shen Y, Qin A, Zhao J, Cao Y
Sci Adv (2023) 9 pp. eadi5656-eadi5656 [ Pubmed: 37831771 DOI: doi:10.1126/sciadv.adi5656 ]
- Transitional endoplasmic reticulum atpase (87 kDa, Protein from Homo sapiens)
- Derlin-1 (26 kDa, Protein from Homo sapiens)
- The cryo-em structure of human erad retro-translocation complex (650 kDa, Complex from Homo sapiens)
- Adenosine-5'-diphosphate (427 Da, Ligand)
The cryo-EM structure of human ERAD retro-translocation complex
Resolution: 3.61 Å
EM Method: Single-particle
Fitted PDBs: 7y53
Q-score: 0.366
Rao B, Wang Q, Yao D, Xia Y, Li W, Xie Y, Li S, Cao M, Shen Y, Qin A, Zhao J, Cao Y
Sci Adv (2023) 9 pp. eadi5656-eadi5656 [ Pubmed: 37831771 DOI: doi:10.1126/sciadv.adi5656 ]
- The cryo-em structure of human erad retro-translocation complex (650 kDa, Complex from Homo sapiens)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Transitional endoplasmic reticulum atpase (87 kDa, Protein from Homo sapiens)
- Derlin-1 (26 kDa, Protein from Homo sapiens)
The cryo-EM structure of hAE2 with DIDS
Resolution: 3.08 Å
EM Method: Single-particle
Fitted PDBs: 8gv8
Q-score: 0.555
Zhang Q, Jian L, Yao D, Rao B, Xia Y, Hu K, Li S, Shen Y, Cao M, Qin A, Zhao J, Cao Y
Nat Commun (2023) 14 pp. 1812-1812 [ DOI: doi:10.1038/s41467-023-37557-y Pubmed: 37002221 ]
- Anion exchange protein 2 (137 kDa, Protein from Homo sapiens)
- 2,2'-ethane-1,2-diylbis{5-[(sulfanylmethyl)amino]benzenesulfonic acid} (464 Da, Ligand)
- Hae2 with dids (137 kDa, Complex from Homo sapiens)
The cryo-EM structure of hAE2 with chloride ion
Resolution: 3.06 Å
EM Method: Single-particle
Fitted PDBs: 8gv9
Q-score: 0.549
Zhang Q, Jian L, Yao D, Rao B, Xia Y, Hu K, Li S, Shen Y, Cao M, Qin A, Zhao J, Cao Y
Nat Commun (2023) 14 pp. 1812-1812 [ Pubmed: 37002221 DOI: doi:10.1038/s41467-023-37557-y ]
- Anion exchange protein 2 with chloride ion (137 kDa, Complex from Homo sapiens)
- Anion exchange protein 2 (137 kDa, Protein from Homo sapiens)
- Chloride ion (35 Da, Ligand)
Resolution: 3.32 Å
EM Method: Single-particle
Fitted PDBs: 8gvh
Q-score: 0.513
Zhang Q, Jian L, Yao D, Rao B, Xia Y, Hu K, Li S, Shen Y, Cao M, Qin A, Zhao J, Cao Y
Nat Commun (2023) 14 pp. 1812-1812 [ Pubmed: 37002221 DOI: doi:10.1038/s41467-023-37557-y ]
- Anion exchange protein 2 (137 kDa, Protein from Homo sapiens)
- Cholesterol hemisuccinate (486 Da, Ligand)
- Anion exchange protein 2 in acidic ph (137 kDa, Complex from Homo sapiens)
Cryo-EM structure of human pyruvate carboxylase in apo state
Resolution: 3.9 Å
EM Method: Single-particle
Fitted PDBs: 7wta
Q-score: 0.265
Chai P, Lan P, Li S, Yao D, Chang C, Cao M, Shen Y, Ge S, Wu J, Lei M, Fan X
Mol Cell (2022) 82 pp. 4116-4130.e6 [ DOI: doi:10.1016/j.molcel.2022.09.033 Pubmed: 36283412 ]
- Pyruvate carboxylase, mitochondrial (129 kDa, Protein from human)
- Pc (Complex from Homo sapiens)
- 5-(hexahydro-2-oxo-1h-thieno[3,4-d]imidazol-6-yl)pentanal (228 Da, Ligand)
Cryo-EM structure of human pyruvate carboxylase with acetyl-CoA
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 7wtb
Q-score: 0.313
Chai P, Lan P, Li S, Yao D, Chang C, Cao M, Shen Y, Ge S, Wu J, Lei M, Fan X
Mol Cell (2022) 82 pp. 4116-4130.e6 [ Pubmed: 36283412 DOI: doi:10.1016/j.molcel.2022.09.033 ]
- 5-(hexahydro-2-oxo-1h-thieno[3,4-d]imidazol-6-yl)pentanal (228 Da, Ligand)
- Phosphoaminophosphonic acid-adenylate ester (506 Da, Ligand)
- Acetyl coenzyme *a (809 Da, Ligand)
- Pyruvate carboxylase, mitochondrial (129 kDa, Protein from human)
- Pc (Complex from Homo sapiens)