CryoEM structure of Vibrio cholerae transposon Tn6677 AAA+ ATPase TnsC
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 7rzy
Q-score: 0.09
Hoffmann FT, Kim M, Beh LY, Wang J, Vo PLH, Gelsinger DR, George JT, Acree C, Mohabir JT, Fernandez IS, Sternberg SH
Nature (2022) 609 pp. 384-393 [ DOI: doi:10.1038/s41586-022-05059-4 Pubmed: 36002573 ]
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Vchtnsc (238 kDa, Complex from Vibrio cholerae)
- Tn6677 vibrio cholerae transposon tnsc (vchtnsc) (37 kDa, Protein from Vibrio cholerae)
VchTnsC AAA+ ATPase with DNA, single heptamer
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 7ufi
Q-score: 0.321
Hoffmann FT, Kim M, Beh LY, Wang J, Vo PLH, Gelsinger DR, George JT, Acree C, Mohabir JT, Fernandez IS, Sternberg SH
Nature (2022) 609 pp. 384-393 [ DOI: doi:10.1038/s41586-022-05059-4 Pubmed: 36002573 ]
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Dna (5'-d(p*tp*tp*cp*ap*gp*cp*cp*gp*cp*gp*cp*tp*gp*tp*ap*cp*tp*gp*gp*ap*g)-3') (6 kDa, DNA from synthetic construct)
- Vchtnsc aaa+ atpase with atp and dna (single heptamer form) (Complex from Vibrio cholerae)
- Dna (5'-d(p*cp*tp*cp*cp*ap*gp*tp*ap*cp*ap*gp*cp*gp*cp*gp*gp*cp*tp*gp*ap*a)-3') (6 kDa, DNA from synthetic construct)
- Vchtnsc (35 kDa, Protein from Vibrio cholerae)
VchTnsC AAA+ with DNA (double heptamer)
Resolution: 3.9 Å
EM Method: Single-particle
Fitted PDBs: 7ufm
Q-score: 0.197
Hoffmann FT, Kim M, Beh LY, Wang J, Vo PLH, Gelsinger DR, George JT, Acree C, Mohabir JT, Fernandez IS, Sternberg SH
Nature (2022) 609 pp. 384-393 [ DOI: doi:10.1038/s41586-022-05059-4 Pubmed: 36002573 ]
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Dna (36-mer) (11 kDa, DNA from synthetic construct)
- Dna (36-mer) (11 kDa, DNA from synthetic construct)
- Vchtnsc (35 kDa, Protein from Vibrio cholerae)
- Vchtnsc aaa+ with dna (double heptamer) (Complex from Vibrio cholerae)
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 7tql
Q-score: 0.412
Lapointe CP, Grosely R, Sokabe M, Alvarado C, Wang J, Montabana E, Villa N, Shin BS, Dever TE, Fraser CS, Fernandez IS, Puglisi JD
Nature (2022) 607 pp. 185-190 [ Pubmed: 35732735 DOI: doi:10.1038/s41586-022-04858-z ]
- 40s ribosomal protein s3 (24 kDa, Protein from Homo sapiens)
- Ribosomal protein es17 (15 kDa, Protein from Homo sapiens)
- Isoform 3 of 40s ribosomal protein s24 (14 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s15 (13 kDa, Protein from Homo sapiens)
- Phosphoaminophosphonic acid-guanylate ester (522 Da, Ligand)
- 40s ribosomal protein s27 (9 kDa, Protein from Homo sapiens)
- Ribosomal protein es25 (8 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s26 (11 kDa, Protein from Homo sapiens)
- Ribosomal protein us2 (47 kDa, Protein from Homo sapiens)
- Human 40s ribosomal subunit in complex with eif1a and eif5b (Cell from Homo sapiens)
- 40s ribosomal protein s4, x isoform (29 kDa, Protein from Homo sapiens)
- Guanosine-5'-monophosphate (363 Da, Ligand)
- Translation initiation factor eif1a (10 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s8 (23 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s16 (15 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s5 (21 kDa, Protein from Homo sapiens)
- Ribosomal protein es28 (6 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s27a (7 kDa, Protein from Homo sapiens)
- Ribosomal protein es12 (13 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s2 (24 kDa, Protein from Homo sapiens)
- Eukaryotic translation initiation factor 5b (69 kDa, Protein from Homo sapiens)
- Ribosomal protein us13 (16 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s19 (15 kDa, Protein from Homo sapiens)
- 18s ribosomal rna (534 kDa, RNA from Homo sapiens)
- Receptor of activated protein c kinase 1 (34 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s9 (21 kDa, Protein from Homo sapiens)
- Ribosomal protein us15 (16 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s21 (8 kDa, Protein from Homo sapiens)
- Zinc ion (65 Da, Ligand)
- 40s ribosomal protein s15a (14 kDa, Protein from Homo sapiens)
- Ribosomal protein us11 (14 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s7 (21 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s6 (26 kDa, Protein from Homo sapiens)
- Ribosomal protein es30 (5 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s11 (17 kDa, Protein from Homo sapiens)
- Ribosomal protein us14 (6 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s10 (11 kDa, Protein from Homo sapiens)
- Ribosomal protein el41 (2 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s23 (15 kDa, Protein from Homo sapiens)
- Human met-trnaimet (24 kDa, RNA from Homo sapiens)
- Ribosomal protein us10 (11 kDa, Protein from Homo sapiens)
CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 6woo
Q-score: 0.487
Wang J, Wang J, Puglisi J, Fernandez IS
To Be Published
- Us14 (6 kDa, Protein from Saccharomyces cerevisiae)
- Es8 (22 kDa, Protein from Saccharomyces cerevisiae)
- Us11 (13 kDa, Protein from Saccharomyces cerevisiae)
- El31 (12 kDa, Protein from Saccharomyces cerevisiae)
- Us12 (15 kDa, Protein from Saccharomyces cerevisiae)
- Ul5 (19 kDa, Protein from Saccharomyces cerevisiae)
- Ul14 (14 kDa, Protein from Saccharomyces cerevisiae)
- El36 (10 kDa, Protein from Saccharomyces cerevisiae)
- Es4 (29 kDa, Protein from Saccharomyces cerevisiae)
- El32 (14 kDa, Protein from Saccharomyces cerevisiae)
- El40 (5 kDa, Protein from Saccharomyces cerevisiae)
- El24 (7 kDa, Protein from Saccharomyces cerevisiae)
- Us10 (12 kDa, Protein from Saccharomyces cerevisiae)
- Us7 (22 kDa, Protein from Saccharomyces cerevisiae)
- El14 (14 kDa, Protein from Saccharomyces cerevisiae)
- El18 (20 kDa, Protein from Saccharomyces cerevisiae)
- El37 (9 kDa, Protein from Saccharomyces cerevisiae)
- El41 (3 kDa, Protein from Saccharomyces cerevisiae)
- Guanosine-5'-diphosphate (443 Da, Ligand)
- El42 (11 kDa, Protein from Saccharomyces cerevisiae)
- Es26 (11 kDa, Protein from Saccharomyces cerevisiae)
- Us5 (23 kDa, Protein from Saccharomyces cerevisiae)
- El13 (22 kDa, Protein from Saccharomyces cerevisiae)
- Es19 (15 kDa, Protein from Saccharomyces cerevisiae)
- Ul3 (43 kDa, Protein from Saccharomyces cerevisiae)
- 5.8s ribosomal rrna (50 kDa, RNA from Saccharomyces cerevisiae)
- Ul6 (21 kDa, Protein from Saccharomyces cerevisiae)
- Es25 (8 kDa, Protein from Saccharomyces cerevisiae)
- Es24 (15 kDa, Protein from Saccharomyces cerevisiae)
- Es28 (7 kDa, Protein from Saccharomyces cerevisiae)
- Es1 (24 kDa, Protein from Saccharomyces cerevisiae)
- Es10 (11 kDa, Protein from Saccharomyces cerevisiae)
- El29 (6 kDa, Protein from Saccharomyces cerevisiae)
- Es31 (6 kDa, Protein from Saccharomyces cerevisiae)
- Es12 (13 kDa, Protein from Saccharomyces cerevisiae)
- Ul10 (21 kDa, Protein from Saccharomyces cerevisiae)
- Ul13 (22 kDa, Protein from Saccharomyces cerevisiae)
- Us2 (22 kDa, Protein from Saccharomyces cerevisiae)
- Met-trna-imet (24 kDa, RNA from Saccharomyces cerevisiae)
- Methionine (149 Da, Ligand)
- Us8 (14 kDa, Protein from Saccharomyces cerevisiae)
- El34 (13 kDa, Protein from Saccharomyces cerevisiae)
- 5s ribosomal rna (38 kDa, RNA from Saccharomyces cerevisiae)
- El22 (11 kDa, Protein from Saccharomyces cerevisiae)
- Ul2 (26 kDa, Protein from Saccharomyces cerevisiae)
- Ul29 (13 kDa, Protein from Saccharomyces cerevisiae)
- El27 (15 kDa, Protein from Saccharomyces cerevisiae)
- El33 (11 kDa, Protein from Saccharomyces cerevisiae)
- Us19 (11 kDa, Protein from Saccharomyces cerevisiae)
- L10 (12 kDa, Protein from Saccharomyces cerevisiae)
- Ul15 (16 kDa, Protein from Saccharomyces cerevisiae)
- El43 (9 kDa, Protein from Saccharomyces cerevisiae)
- Ul22 (20 kDa, Protein from Saccharomyces cerevisiae)
- El39 (6 kDa, Protein from Saccharomyces cerevisiae)
- Es21 (9 kDa, Protein from Saccharomyces cerevisiae)
- Us4 (20 kDa, Protein from Saccharomyces cerevisiae)
- Ul24 (14 kDa, Protein from Saccharomyces cerevisiae)
- Es17 (14 kDa, Protein from Saccharomyces cerevisiae)
- El8 (25 kDa, Protein from Saccharomyces cerevisiae)
- Ul16 (24 kDa, Protein from Saccharomyces cerevisiae)
- Mrna (1 kDa, RNA from Saccharomyces cerevisiae)
- El21 (18 kDa, Protein from Saccharomyces cerevisiae)
- 25s ribosomal rna (1 MDa, RNA from Saccharomyces cerevisiae)
- Us3 (24 kDa, Protein from Saccharomyces cerevisiae)
- El15 (24 kDa, Protein from Saccharomyces cerevisiae)
- Zinc ion (65 Da, Ligand)
- Es27 (8 kDa, Protein from Saccharomyces cerevisiae)
- Us19 (15 kDa, Protein from Saccharomyces cerevisiae)
- Ul1 (24 kDa, Protein from Saccharomyces cerevisiae)
- Ul4 (38 kDa, Protein from Saccharomyces cerevisiae)
- El20 (20 kDa, Protein from Saccharomyces cerevisiae)
- Rack1 (34 kDa, Protein from Saccharomyces cerevisiae)
- Es30 (6 kDa, Protein from Saccharomyces cerevisiae)
- El19 (21 kDa, Protein from Saccharomyces cerevisiae)
- El30 (10 kDa, Protein from Saccharomyces cerevisiae)
- N-carboxy-l-threonine (163 Da, Ligand)
- Us15 (16 kDa, Protein from Saccharomyces cerevisiae)
- Ul18 (33 kDa, Protein from Saccharomyces cerevisiae)
- El6 (19 kDa, Protein from Saccharomyces cerevisiae)
- Es7 (21 kDa, Protein from Saccharomyces cerevisiae)
- Eif5b (67 kDa, Protein from Saccharomyces cerevisiae)
- Ul30 (25 kDa, Protein from Saccharomyces cerevisiae)
- 18s ribosomal rna (578 kDa, RNA from Saccharomyces cerevisiae)
- El38 (8 kDa, Protein from Saccharomyces cerevisiae)
- Us13 (15 kDa, Protein from Saccharomyces cerevisiae)
- 80s ribosome with eif5b, met-trnaimet, mrna, and gdp (Complex from Saccharomyces cerevisiae)
- Us17 (16 kDa, Protein from Saccharomyces cerevisiae)
- Es6 (25 kDa, Protein from Saccharomyces cerevisiae)
- Ul23 (13 kDa, Protein from Saccharomyces cerevisiae)
Neupane R, Pisareva VP, Rodriguez CF, Pisarev AV, Fernandez IS
eLife (2020) 9 [ Pubmed: 32286223 DOI: doi:10.7554/eLife.54575 ]
Resolution: 3.47 Å
EM Method: Single-particle
Fitted PDBs: 6w2s
Q-score: 0.415
Neupane R, Pisareva VP, Rodriguez CF, Pisarev AV, Fernandez IS
eLife (2020) 9 [ DOI: doi:10.7554/eLife.54575 Pubmed: 32286223 ]
- Es28 (7 kDa, Protein from Oryctolagus cuniculus)
- Rack1 (35 kDa, Protein from Oryctolagus cuniculus)
- Es12 (14 kDa, Protein from Oryctolagus cuniculus)
- Us9 (19 kDa, Protein from Oryctolagus cuniculus)
- Es17 (15 kDa, Protein from Oryctolagus cuniculus)
- Es10 (17 kDa, Protein from Oryctolagus cuniculus)
- Es31 (18 kDa, Protein from Oryctolagus cuniculus)
- Eukaryotic translation initiation factor 3 subunit h (41 kDa, Protein from Oryctolagus cuniculus)
- Eukaryotic translation initiation factor 3 subunit f (37 kDa, Protein from Oryctolagus cuniculus)
- Es8 (24 kDa, Protein from Oryctolagus cuniculus)
- Es7 (22 kDa, Protein from Oryctolagus cuniculus)
- Es21 (9 kDa, Protein from Oryctolagus cuniculus)
- Es4 (29 kDa, Protein from Oryctolagus cuniculus)
- Es6 (28 kDa, Protein from Oryctolagus cuniculus)
- Us10 (13 kDa, Protein from Oryctolagus cuniculus)
- Eukaryotic translation initiation factor 3 subunit a (164 kDa, Protein from Oryctolagus cuniculus)
- Es1 (30 kDa, Protein from Oryctolagus cuniculus)
- Us4 (22 kDa, Protein from Oryctolagus cuniculus)
- Eukaryotic translation initiation factor 3 subunit l (71 kDa, Protein from Oryctolagus cuniculus)
- 18s rrna (547 kDa, RNA from Oryctolagus cuniculus)
- Es24 (15 kDa, Protein from Oryctolagus cuniculus)
- Es30 (14 kDa, Protein from Oryctolagus cuniculus)
- Us12 (15 kDa, Protein from Oryctolagus cuniculus)
- Us7 (22 kDa, Protein from Oryctolagus cuniculus)
- Es25 (13 kDa, Protein from Oryctolagus cuniculus)
- Eukaryotic translation initiation factor 3 subunit c (105 kDa, Protein from Oryctolagus cuniculus)
- Zinc ion (65 Da, Ligand)
- Us5 (27 kDa, Protein from Oryctolagus cuniculus)
- Eukaryotic translation initiation factor 3 subunit m (42 kDa, Protein from Oryctolagus cuniculus)
- Crpv 5'-utr ires (121 kDa, RNA from Cricket paralysis virus)
- Us3 (31 kDa, Protein from Oryctolagus cuniculus)
- Us13 (17 kDa, Protein from Oryctolagus cuniculus)
- Eukaryotic translation initiation factor 3 subunit k (25 kDa, Protein from Oryctolagus cuniculus)
- Us8 (14 kDa, Protein from Oryctolagus cuniculus)
- Us19 (17 kDa, Protein from Oryctolagus cuniculus)
- Us2 (33 kDa, Protein from Oryctolagus cuniculus)
- Es27 (9 kDa, Protein from Oryctolagus cuniculus)
- Magnesium ion (24 Da, Ligand)
- Us17 (18 kDa, Protein from Oryctolagus cuniculus)
- Structure of the cricket paralysis virus 5-utr ires (crpv 5-utr-ires) bound to the small ribosomal subunit in the open state (class 1) (Complex from Oryctolagus cuniculus)
- Us15 (17 kDa, Protein from Oryctolagus cuniculus)
- Es26 (13 kDa, Protein from Oryctolagus cuniculus)
- Eukaryotic translation initiation factor 3 subunit e (54 kDa, Protein from Oryctolagus cuniculus)
- Es19 (16 kDa, Protein from Oryctolagus cuniculus)
- Es29 (6 kDa, Protein from Oryctolagus cuniculus)
- Us11 (16 kDa, Protein from Oryctolagus cuniculus)
Resolution: 3.36 Å
EM Method: Single-particle
Fitted PDBs: 6w2t
Q-score: 0.42
Neupane R, Pisareva VP, Rodriguez CF, Pisarev AV, Fernandez IS
eLife (2020) 9 [ Pubmed: 32286223 DOI: doi:10.7554/eLife.54575 ]
- Es26 (13 kDa, Protein from Oryctolagus cuniculus)
- Us10 (13 kDa, Protein from Oryctolagus cuniculus)
- Es29 (6 kDa, Protein from Oryctolagus cuniculus)
- Us8 (14 kDa, Protein from Oryctolagus cuniculus)
- Es6 (28 kDa, Protein from Oryctolagus cuniculus)
- Es28 (7 kDa, Protein from Oryctolagus cuniculus)
- Eukaryotic translation initiation factor 3 subunit c (105 kDa, Protein from Oryctolagus cuniculus)
- Es4 (29 kDa, Protein from Oryctolagus cuniculus)
- Eukaryotic translation initiation factor 3 subunit e (54 kDa, Protein from Oryctolagus cuniculus)
- Eukaryotic translation initiation factor 3 subunit m (42 kDa, Protein from Oryctolagus cuniculus)
- Eukaryotic translation initiation factor 3 subunit h (41 kDa, Protein from Oryctolagus cuniculus)
- Magnesium ion (24 Da, Ligand)
- Us2 (33 kDa, Protein from Oryctolagus cuniculus)
- Es31 (18 kDa, Protein from Oryctolagus cuniculus)
- Eukaryotic translation initiation factor 3 subunit l (71 kDa, Protein from Oryctolagus cuniculus)
- Us9 (19 kDa, Protein from Oryctolagus cuniculus)
- 18s rrna (547 kDa, RNA from Oryctolagus cuniculus)
- Es1 (30 kDa, Protein from Oryctolagus cuniculus)
- Es21 (9 kDa, Protein from Oryctolagus cuniculus)
- Us19 (17 kDa, Protein from Oryctolagus cuniculus)
- Us13 (17 kDa, Protein from Oryctolagus cuniculus)
- Es19 (16 kDa, Protein from Oryctolagus cuniculus)
- Us15 (17 kDa, Protein from Oryctolagus cuniculus)
- Es17 (15 kDa, Protein from Oryctolagus cuniculus)
- Us5 (27 kDa, Protein from Oryctolagus cuniculus)
- Es7 (22 kDa, Protein from Oryctolagus cuniculus)
- Us4 (22 kDa, Protein from Oryctolagus cuniculus)
- Us12 (15 kDa, Protein from Oryctolagus cuniculus)
- Es30 (14 kDa, Protein from Oryctolagus cuniculus)
- Es24 (15 kDa, Protein from Oryctolagus cuniculus)
- Zinc ion (65 Da, Ligand)
- Eukaryotic translation initiation factor 3 subunit a (164 kDa, Protein from Oryctolagus cuniculus)
- Us11 (16 kDa, Protein from Oryctolagus cuniculus)
- Es8 (24 kDa, Protein from Oryctolagus cuniculus)
- Es27 (9 kDa, Protein from Oryctolagus cuniculus)
- Us7 (22 kDa, Protein from Oryctolagus cuniculus)
- Us17 (18 kDa, Protein from Oryctolagus cuniculus)
- Crpv 5'-utr ires (121 kDa, RNA from Cricket paralysis virus)
- Eukaryotic translation initiation factor 3 subunit f (37 kDa, Protein from Oryctolagus cuniculus)
- Es25 (13 kDa, Protein from Oryctolagus cuniculus)
- Es12 (14 kDa, Protein from Oryctolagus cuniculus)
- Eukaryotic translation initiation factor 3 subunit k (25 kDa, Protein from Oryctolagus cuniculus)
- Structure of the cricket paralysis virus 5-utr ires (crpv 5-utr-ires) bound to the small ribosomal subunit in the closed state (class 2) (Complex from Oryctolagus cuniculus)
- Es10 (17 kDa, Protein from Oryctolagus cuniculus)
- Us3 (31 kDa, Protein from Oryctolagus cuniculus)
- Eukaryotic translation initiation factor 3 subunit d (64 kDa, Protein from Oryctolagus cuniculus)
- Rack1 (35 kDa, Protein from Oryctolagus cuniculus)
K.lactis 80S ribosome with p/PE tRNA and eIF5B
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 6uz7
Q-score: 0.39
PNAS (2020) 117 pp. 1429-1437 [ DOI: doi:10.1073/pnas.1916436117 Pubmed: 31900355 ]
- Klla0e23651p (18 kDa, Protein from Kluyveromyces lactis)
- Klla0a10483p (17 kDa, Protein from Kluyveromyces lactis)
- 40s ribosomal protein s22 (14 kDa, Protein from Kluyveromyces lactis)
- 60s ribosomal protein l13 (22 kDa, Protein from Kluyveromyces lactis)
- Klla0d06941p (33 kDa, Protein from Kluyveromyces lactis)
- 60s ribosomal protein l41 (3 kDa, Protein from Kluyveromyces lactis)
- 40s ribosomal protein s0 (28 kDa, Protein from Kluyveromyces lactis)
- 40s ribosomal protein s24 (15 kDa, Protein from Kluyveromyces lactis)
- Kluyveromyces lactis 80s ribosome in complex with eif5b (Complex from Kluyveromyces lactis)
- Ribosomal protein l37 (9 kDa, Protein from Kluyveromyces lactis)
- 40s ribosomal protein s7 (21 kDa, Protein from Kluyveromyces lactis)
- Rps23 (16 kDa, Protein from Kluyveromyces lactis)
- Klla0e06843p (14 kDa, Protein from Kluyveromyces lactis)
- Klla0e05941p (9 kDa, Protein from Kluyveromyces lactis)
- 40s ribosomal protein s6 (26 kDa, Protein from Kluyveromyces lactis)
- Phosphomethylphosphonic acid guanylate ester (521 Da, Ligand)
- Klla0e23673p (21 kDa, Protein from Kluyveromyces lactis)
- Gdpcp (12 kDa, Protein from Kluyveromyces lactis)
- 60s acidic ribosomal protein p0 (33 kDa, Protein from Kluyveromyces lactis)
- 40s ribosomal protein s25 (12 kDa, Protein from Kluyveromyces lactis)
- Ubiquitin-40s ribosomal protein s27a (17 kDa, Protein from Kluyveromyces lactis)
- 60s ribosomal protein l29 (7 kDa, Protein from Kluyveromyces lactis)
- Klla0d10659p (25 kDa, Protein from Kluyveromyces lactis)
- Ribosomal protein (24 kDa, Protein from Kluyveromyces lactis)
- 60s ribosomal protein l36 (11 kDa, Protein from Kluyveromyces lactis)
- 60s ribosomal protein l20 (20 kDa, Protein from Kluyveromyces lactis)
- 40s ribosomal protein s21 (9 kDa, Protein from Kluyveromyces lactis)
- 40s ribosomal protein s14 (14 kDa, Protein from Kluyveromyces lactis)
- Klla0b08173p (12 kDa, Protein from Kluyveromyces lactis)
- 40s ribosomal protein s8 (22 kDa, Protein from Kluyveromyces lactis)
- Klla0f23265p (108 kDa, Protein from Kluyveromyces lactis)
- 60s ribosomal protein l24 (17 kDa, Protein from Kluyveromyces lactis)
- Rna (76-mer) (24 kDa, RNA from Saccharomyces cerevisiae)
- Klla0a07194p (15 kDa, Protein from Kluyveromyces lactis)
- Klla0d05181p (13 kDa, Protein from Kluyveromyces lactis)
- 60s ribosomal protein l3 (43 kDa, Protein from Kluyveromyces lactis)
- Klla0a07227p (20 kDa, Protein from Kluyveromyces lactis)
- 40s ribosomal protein s26 (13 kDa, Protein from Kluyveromyces lactis)
- Klla0b07139p (39 kDa, Protein from Kluyveromyces lactis)
- Klla0d16027p (27 kDa, Protein from Kluyveromyces lactis)
- Klla0f09812p (27 kDa, Protein from Kluyveromyces lactis)
- Klla0c08371p (14 kDa, Protein from Kluyveromyces lactis)
- 60s ribosomal protein l39 (6 kDa, Protein from Kluyveromyces lactis)
- 60s ribosomal protein l30 (11 kDa, Protein from Kluyveromyces lactis)
- Klla0f04499p (21 kDa, Protein from Kluyveromyces lactis)
- Klla0d03410p (27 kDa, Protein from Kluyveromyces lactis)
- 25s ribosomal rna (1 MDa, RNA from Kluyveromyces lactis)
- Klla0f18040p (16 kDa, Protein from Kluyveromyces lactis)
- 60s ribosomal protein l44 (12 kDa, Protein from Kluyveromyces lactis)
- Ribosomal protein l15 (24 kDa, Protein from Kluyveromyces lactis)
- Klla0d08305p (26 kDa, Protein from Kluyveromyces lactis)
- Klla0e00573p (28 kDa, Protein from Kluyveromyces lactis)
- Klla0f25542p (13 kDa, Protein from Kluyveromyces lactis)
- Klla0e12277p (35 kDa, Protein from Kluyveromyces lactis)
- 40s ribosomal protein s28 (7 kDa, Protein from Kluyveromyces lactis)
- 40s ribosomal protein s30 (7 kDa, Protein from Kluyveromyces lactis)
- Klla0f07843p (15 kDa, Protein from Kluyveromyces lactis)
- Klla0e03455p (15 kDa, Protein from Kluyveromyces lactis)
- 18s ribosomal rna (579 kDa, RNA from Kluyveromyces lactis)
- 60s ribosomal protein l25 (15 kDa, Protein from Kluyveromyces lactis)
- Klla0c18216p (8 kDa, Protein from Kluyveromyces lactis)
- Klla0e12453p (21 kDa, Protein from Kluyveromyces lactis)
- Klla0f04675p (22 kDa, Protein from Kluyveromyces lactis)
- Klla0e06997p (14 kDa, Protein from Kluyveromyces lactis)
- Klla0b01562p (17 kDa, Protein from Kluyveromyces lactis)
- 40s ribosomal protein s29 (6 kDa, Protein from Kluyveromyces lactis)
- 40s ribosomal protein s27 (8 kDa, Protein from Kluyveromyces lactis)
- Klla0d07405p (12 kDa, Protein from Kluyveromyces lactis)
- Klla0b13409p (15 kDa, Protein from Kluyveromyces lactis)
- 40s ribosomal protein s16 (15 kDa, Protein from Kluyveromyces lactis)
- Klla0b01474p (15 kDa, Protein from Kluyveromyces lactis)
- Rna (121-mer) (38 kDa, RNA from Kluyveromyces lactis)
- 40s ribosomal protein s1 (28 kDa, Protein from Kluyveromyces lactis)
- Zinc ion (65 Da, Ligand)
- Klla0a06336p (20 kDa, Protein from Kluyveromyces lactis)
- 40s ribosomal protein s12 (14 kDa, Protein from Kluyveromyces lactis)
- Klla0f05247p (14 kDa, Protein from Kluyveromyces lactis)
- Klla0d05643p (25 kDa, Protein from Kluyveromyces lactis)
- Klla0b05742p (14 kDa, Protein from Kluyveromyces lactis)
- 5.8s ribosomal rna (910 kDa, RNA from Kluyveromyces lactis)
- Klla0b02937p (13 kDa, Protein from Kluyveromyces lactis)
- Klla0f08261p (19 kDa, Protein from Kluyveromyces lactis)
- Rpl28 (16 kDa, Protein from Kluyveromyces lactis)
- 40s ribosomal protein s4 (29 kDa, Protein from Kluyveromyces lactis)
- Ubiquitin fusion protein (14 kDa, Protein from Kluyveromyces lactis)
- Klla0b04686p (20 kDa, Protein from Kluyveromyces lactis)
VC-Tn6677 multisubunit CRISPR/Cas effector, close conformation.
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 6pif
Q-score: 0.436
Halpin-Healy TS, Klompe SE, Sternberg SH, Fernandez IS
Nature (2020) 577 pp. 271-274 [ Pubmed: 31853065 DOI: doi:10.1038/s41586-019-1849-0 ]
- Tniq monomer 1 (41 kDa, Protein from Vibrio cholerae)
- Type i-f crispr-associated endoribonuclease cas6/csy4 (22 kDa, Protein from Vibrio cholerae)
- Cas7, type i-f crispr-associated protein (39 kDa, Protein from Vibrio cholerae)
- Cas5_8 naturally occurring fusion protein (58 kDa, Protein from Vibrio cholerae)
- Vc-tn667 transposon encoded crispr/cas effector (600 kDa, Complex from Vibrio cholerae)
- Tniq monomer 2 (42 kDa, Protein from Vibrio cholerae)
- Guide rna (60-mer) (19 kDa, RNA from Vibrio cholerae)