Resolution: 3.06 Å
EM Method: Single-particle
Fitted PDBs: 8bei
Q-score: 0.543
Sendker LF, Lo YK, Heimerl T, Bohn S, Pfister P, Mais N, Sadowska W, Peterson L, Benesch JLP, Marklund E, Bange G, Erb TJ, Schuller JM, Hochberg GKA
To Be Published
Resolution: 5.91 Å
EM Method: Single-particle
Fitted PDBs: 8rjk
Q-score: 0.277
Sendker FL, Lo YK, Heimerl T, Bohn S, Persson LJ, Mais CN, Sadowska W, Paczia N, Nussbaum E, Del Carmen Sanchez Olmos M, Forchhammer K, Schindler D, Erb TJ, Benesch JLP, Marklund EG, Bange G, Schuller JM, Hochberg GKA
Nature (2024) 628 pp. 894-900 [ DOI: doi:10.1038/s41586-024-07287-2 Pubmed: 38600380 ]
Resolution: 3.34 Å
EM Method: Single-particle
Fitted PDBs: 8rjl
Q-score: 0.504
Sendker FL, Lo YK, Heimerl T, Bohn S, Persson LJ, Mais CN, Sadowska W, Paczia N, Nussbaum E, Del Carmen Sanchez Olmos M, Forchhammer K, Schindler D, Erb TJ, Benesch JLP, Marklund EG, Bange G, Schuller JM, Hochberg GKA
Nature (2024) 628 pp. 894-900 [ DOI: doi:10.1038/s41586-024-07287-2 Pubmed: 38600380 ]
Structure of a first level Sierpinski triangle formed by a citrate synthase
Resolution: 3.93 Å
EM Method: Single-particle
Fitted PDBs: 8an1
Q-score: 0.386
Sendker LF, Lo YK, Heimerl T, Bohn S, Pfister P, Mais N, Sadowska W, Peterson L, Benesch JLP, Marklund E, Bange G, Erb TJ, Schuller JM, Hochberg GKA
To Be Published
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 8oh5
Q-score: 0.491
Kumar A, Kremp F, Roth J, Freibert SA, Muller V, Schuller JM
Nat Commun (2023) 14 pp. 5484-5484 [ DOI: doi:10.1038/s41467-023-41212-x Pubmed: 37673911 ]
- Iron/sulfur cluster (351 Da, Ligand)
- Nad-dependent formate dehydrogenase gamma subunit (18 kDa, Protein from Sporomusa ovata DSM 2662)
- Fe2/s2 (inorganic) cluster (175 Da, Ligand)
- Nicotinamide-adenine-dinucleotide (663 Da, Ligand)
- Formate dehydrogenase-o, major subunit (126 kDa, Protein from Sporomusa ovata DSM 2662)
- Nad-reducing hydrogenase subunit hoxf (63 kDa, Protein from Sporomusa ovata DSM 2662)
- Flavin mononucleotide (456 Da, Ligand)
- Cryo-em structure of the electron bifurcating trans-hydrogenase stnabc complex from sporomusa ovata (state 2) (850 kDa, Complex from Sporomusa ovata DSM 2662)
- Flavin-adenine dinucleotide (785 Da, Ligand)
- Zinc ion (65 Da, Ligand)
- Nadph dihydro-nicotinamide-adenine-dinucleotide phosphate (745 Da, Ligand)
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 8oh9
Q-score: 0.46
Kumar A, Kremp F, Roth J, Freibert SA, Muller V, Schuller JM
Nat Commun (2023) 14 pp. 5484-5484 [ DOI: doi:10.1038/s41467-023-41212-x Pubmed: 37673911 ]
- Iron/sulfur cluster (351 Da, Ligand)
- Nad-dependent formate dehydrogenase gamma subunit (18 kDa, Protein from Sporomusa ovata DSM 2662)
- Fe2/s2 (inorganic) cluster (175 Da, Ligand)
- Formate dehydrogenase-o, major subunit (126 kDa, Protein from Sporomusa ovata DSM 2662)
- Nad-reducing hydrogenase subunit hoxf (63 kDa, Protein from Sporomusa ovata DSM 2662)
- Flavin-adenine dinucleotide (785 Da, Ligand)
- Zinc ion (65 Da, Ligand)
- Cryo-em structure of the electron bifurcating trans-hydrogenase stnabc complex from sporomusa ovata in the oxidised state (850 kDa, Complex from Sporomusa ovata DSM 2662)
CryoEM structure of a tungsten-containing aldehyde oxidoreductase from Aromatoleum aromaticum
Resolution: 3.22 Å
EM Method: Single-particle
Fitted PDBs: 8c0z
Q-score: 0.541
Winiarska A, Ramirez-Amador F, Hege D, Gemmecker Y, Prinz S, Hochberg G, Heider J, Szaleniec M, Schuller JM
Sci Adv (2023) 9 pp. eadg6689-eadg6689 [ DOI: doi:10.1126/sciadv.adg6689 Pubmed: 37267359 ]
- Iron/sulfur cluster (351 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
- Aldehyde:ferredoxin oxidoreductase,tungsten-containing (65 kDa, Protein from Aromatoleum aromaticum)
- Benzoic acid (122 Da, Ligand)
- Tungsten cofactor (1 kDa, Ligand)
- Tungsten-containing aldehyde oxidoreductase from aromatoleum aromaticum (304 kDa, Complex from Aromatoleum aromaticum)
- Flavin-adenine dinucleotide (785 Da, Ligand)
- Iron-sulfur cluster-binding protein potential subunit of aldehyde oxidoreductase (20 kDa, Protein from Aromatoleum aromaticum)
- Similar to ferredoxin:nadh oxidoreductases or nadh oxidases,potential subunit of aldehyde oxidoreductase (45 kDa, Protein from Aromatoleum aromaticum)
Electron bifurcating hydrogenase - HydABC from A. woodii
Resolution: 4.7 Å
EM Method: Single-particle
Fitted PDBs: 7q4v
Q-score: 0.211
Katsyv A, Kumar A, Saura P, Poverlein MC, Freibert SA, T Stripp S, Jain S, Gamiz-Hernandez AP, Kaila VRI, Muller V, Schuller JM
J Am Chem Soc (2023) 145 pp. 5696-5709 [ Pubmed: 36811855 DOI: doi:10.1021/jacs.2c11683 ]
- Iron/sulfur cluster (351 Da, Ligand)
- Fe2/s2 (inorganic) cluster (175 Da, Ligand)
- Nicotinamide-adenine-dinucleotide (663 Da, Ligand)
- Iron hydrogenase hydc (16 kDa, Protein from Acetobacterium woodii DSM 1030)
- Homodimer complex of hydabc trimer (300 MDa, Complex from Acetobacterium woodii DSM 1030)
- Iron hydrogenase hyda1 (63 kDa, Protein from Acetobacterium woodii DSM 1030)
- Iron hydrogenase hydb (64 kDa, Protein from Acetobacterium woodii DSM 1030)
- Flavin mononucleotide (456 Da, Ligand)
- Zinc ion (65 Da, Ligand)
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 8a5e
Q-score: 0.409
Katsyv A, Kumar A, Saura P, Poverlein MC, Freibert SA, T Stripp S, Jain S, Gamiz-Hernandez AP, Kaila VRI, Muller V, Schuller JM
J Am Chem Soc (2023) 145 pp. 5696-5709 [ Pubmed: 36811855 DOI: doi:10.1021/jacs.2c11683 ]
- Iron/sulfur cluster (351 Da, Ligand)
- Fe2/s2 (inorganic) cluster (175 Da, Ligand)
- Iron hydrogenase hydc (16 kDa, Protein from Acetobacterium woodii DSM 1030)
- Zinc ion (65 Da, Ligand)
- Iron hydrogenase hyda1 (63 kDa, Protein from Acetobacterium woodii DSM 1030)
- Iron hydrogenase hydb (64 kDa, Protein from Acetobacterium woodii DSM 1030)
- Flavin mononucleotide (456 Da, Ligand)
- Electron bifurcating fe-fe hydrogenase hydabc complex from thermoanaerobacter kivui (348 kDa, Complex from Thermoanaerobacter kivui)
- 1,4-dihydronicotinamide adenine dinucleotide (665 Da, Ligand)
- 2 iron/2 sulfur/5 carbonyl/2 water inorganic cluster (355 Da, Ligand)
Resolution: 3.78 Å
EM Method: Single-particle
Fitted PDBs: 7q4w
Q-score: 0.253
Katsyv A, Kumar A, Saura P, Poverlein MC, Freibert SA, T Stripp S, Jain S, Gamiz-Hernandez AP, Kaila VRI, Muller V, Schuller JM
J Am Chem Soc (2023) 145 pp. 5696-5709 [ DOI: doi:10.1021/jacs.2c11683 Pubmed: 36811855 ]
- Flavin mononucleotide (456 Da, Ligand)
- Iron/sulfur cluster (351 Da, Ligand)
- Homodimer complex of hydabc trimer (350 MDa, Complex from Acetobacterium woodii DSM 1030)
- Fe2/s2 (inorganic) cluster (175 Da, Ligand)
- Iron hydrogenase hydb (50 kDa, Protein from Acetobacterium woodii DSM 1030)
- Iron hydrogenase hydc (16 kDa, Protein from Acetobacterium woodii DSM 1030)
- Zinc ion (65 Da, Ligand)
- Iron hydrogenase hyda1 (63 kDa, Protein from Acetobacterium woodii DSM 1030)