Structure of Machupo virus L polymerase in complex with Z protein and 3'-vRNA (dimeric complex)
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 7el9
Q-score: 0.415
Xu X, Peng R, Peng Q, Wang M, Xu Y, Liu S, Tian X, Deng H, Tong Y, Hu X, Zhong J, Wang P, Qi J, Gao GF, Shi Y
Nat Microbiol (2021) 6 pp. 921-931 [ DOI: doi:10.1038/s41564-021-00916-w Pubmed: 34127846 ]
- Ring finger protein z (10 kDa, Protein from Machupo mammarenavirus)
- Machupo virus 3'-vrna promoter (Complex from Machupo mammarenavirus)
- Machupo virus 3'-vrna promoter (6 kDa, RNA from Machupo mammarenavirus)
- Manganese (ii) ion (54 Da, Ligand)
- Machupo virus polymerase (Complex)
- Machupo virus polymerase in complex with z martix protein and 3'-vrna in dimeric form. (580 kDa, Complex from Machupo mammarenavirus)
- Zinc ion (65 Da, Ligand)
- Rna-directed rna polymerase l (250 kDa, Protein from Machupo mammarenavirus)
- Machupo virus z matrix protein (Complex)
Structure of Lassa virus polymerase in complex with 3'-vRNA and Z mutant (F36A)
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 7ela
Q-score: 0.447
Xu X, Peng R, Peng Q, Wang M, Xu Y, Liu S, Tian X, Deng H, Tong Y, Hu X, Zhong J, Wang P, Qi J, Gao GF, Shi Y
Nat Microbiol (2021) 6 pp. 921-931 [ Pubmed: 34127846 DOI: doi:10.1038/s41564-021-00916-w ]
- Manganese (ii) ion (54 Da, Ligand)
- Lassa virus polymerase in complex with 3'-vrna and z mutant (f36a). (270 kDa, Complex from Lassa mammarenavirus)
- 3-'vrna promoter (Complex from Lassa mammarenavirus)
- Lassa virus z protein (Complex)
- Rna-directed rna polymerase l (253 kDa, Protein from Lassa mammarenavirus)
- 3-'vrna promoter (6 kDa, RNA from Lassa mammarenavirus)
- Ring finger protein z (10 kDa, Protein from Lassa mammarenavirus)
- Zinc ion (65 Da, Ligand)
- Lassa virus polymerase (Complex)
Structure of Machupo virus L polymerase in complex with Z protein (dimeric form)
Resolution: 4.1 Å
EM Method: Single-particle
Fitted PDBs: 7elb
Q-score: 0.229
Xu X, Peng R, Peng Q, Wang M, Xu Y, Liu S, Tian X, Deng H, Tong Y, Hu X, Zhong J, Wang P, Qi J, Gao GF, Shi Y
Nat Microbiol (2021) 6 pp. 921-931 [ Pubmed: 34127846 DOI: doi:10.1038/s41564-021-00916-w ]
- Manganese (ii) ion (54 Da, Ligand)
- Rna-directed rna polymerase l (250 kDa, Protein from Machupo mammarenavirus)
- Machupo virus z matrix protein (Complex)
- Ring finger protein z (10 kDa, Protein from Machupo mammarenavirus)
- Machupo virus polymerase in complex with z protein (dimeric form). (580 kDa, Complex from Machupo mammarenavirus)
- Machupo virus polymerase (Complex from Machupo mammarenavirus)
- Zinc ion (65 Da, Ligand)
Structure of monomeric complex of MACV L bound to Z and 3'-vRNA
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 7elc
Q-score: 0.501
Xu X, Peng R, Peng Q, Wang M, Xu Y, Liu S, Tian X, Deng H, Tong Y, Hu X, Zhong J, Wang P, Qi J, Gao GF, Shi Y
Nat Microbiol (2021) 6 pp. 921-931 [ Pubmed: 34127846 DOI: doi:10.1038/s41564-021-00916-w ]
- 3'-vrna promoter (6 kDa, RNA from Machupo mammarenavirus)
- Machupo virus z martix protein (Complex)
- Manganese (ii) ion (54 Da, Ligand)
- Rna-directed rna polymerase l (250 kDa, Protein from Machupo mammarenavirus)
- Zinc ion (65 Da, Ligand)
- Ring finger protein z (10 kDa, Protein from Machupo mammarenavirus)
- 3'-vrna promoter (Complex)
- Machupo virus polymerse (Complex from Machupo mammarenavirus)
- Machupo virus polymerase in complex with z matrix protein and 3'-vrna in monomeric form (270 kDa, Complex from Machupo mammarenavirus)
Structure of apo Lassa virus polymerase
Resolution: 3.9 Å
EM Method: Single-particle
Fitted PDBs: 6klc
Q-score: 0.362
Peng R, Xu X, Jing J, Wang M, Peng Q, Liu S, Wu Y, Bao X, Wang P, Qi J, Gao GF, Shi Y
Nature (2020) 579 pp. 615-619 [ DOI: doi:10.1038/s41586-020-2114-2 Pubmed: 32214249 ]
- Rna-directed rna polymerase l (253 kDa, Protein from Lassa mammarenavirus)
- Lassa virus polymerase (250 kDa, Complex from Lassa mammarenavirus)
- Manganese (ii) ion (54 Da, Ligand)
Structure of apo Machupo virus polymerase
Resolution: 3.58 Å
EM Method: Single-particle
Fitted PDBs: 6kld
Q-score: 0.46
Peng R, Xu X, Jing J, Wang M, Peng Q, Liu S, Wu Y, Bao X, Wang P, Qi J, Gao GF, Shi Y
Nature (2020) 579 pp. 615-619 [ DOI: doi:10.1038/s41586-020-2114-2 Pubmed: 32214249 ]
- Machupo virus polymerase (250 kDa, Complex from Machupo mammarenavirus)
- Rna-directed rna polymerase l (250 kDa, Protein from Machupo virus)
- Zinc ion (65 Da, Ligand)
- Manganese (ii) ion (54 Da, Ligand)
Monomeric structure of Machupo virus polymerase bound to vRNA promoter
Resolution: 4.5 Å
EM Method: Single-particle
Fitted PDBs: 6kle
Q-score: 0.27
Peng R, Xu X, Jing J, Wang M, Peng Q, Liu S, Wu Y, Bao X, Wang P, Qi J, Gao GF, Shi Y
Nature (2020) 579 pp. 615-619 [ DOI: doi:10.1038/s41586-020-2114-2 Pubmed: 32214249 ]
- Machupo virus polymerase bound to vrna promoter (270 kDa, Complex from Machupo mammarenavirus)
- Rna (5'-r(*gp*cp*cp*up*ap*gp*gp*ap*up*cp*cp*ap*cp*up*gp*up*gp*cp*g)-3') (6 kDa, RNA from synthetic construct)
- Rna-directed rna polymerase l (250 kDa, Protein from Machupo virus)
- Zinc ion (65 Da, Ligand)
- Manganese (ii) ion (54 Da, Ligand)
Dimeric structure of Machupo virus polymerase bound to vRNA promoter
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 6klh
Q-score: 0.321
Peng R, Xu X, Jing J, Wang M, Peng Q, Liu S, Wu Y, Bao X, Wang P, Qi J, Gao GF, Shi Y
Nature (2020) 579 pp. 615-619 [ Pubmed: 32214249 DOI: doi:10.1038/s41586-020-2114-2 ]
- Manganese (ii) ion (54 Da, Ligand)
- Rna-directed rna polymerase l (250 kDa, Protein from Machupo virus)
- Zinc ion (65 Da, Ligand)
- Machupo virus polymerase bound to vrna promoter (540 kDa, Complex from Machupo mammarenavirus)
- Rna (5'-r(*gp*cp*cp*up*ap*gp*gp*ap*up*cp*cp*ap*cp*up*gp*up*gp*cp*g)-3') (6 kDa, RNA from synthetic construct)