S protein of SARS-CoV-2 in complex with 2G1
Resolution: 2.7 Å
EM Method: Single-particle
Fitted PDBs: 7x08
Q-score: 0.458
Ma H, Guo Y, Tang H, Tseng CK, Wang L, Zong H, Wang Z, He Y, Chang Y, Wang S, Huang H, Ke Y, Yuan Y, Wu M, Zhang Y, Drelich A, Kempaiah KR, Peng BH, Wang A, Yang K, Yin H, Liu J, Yue Y, Xu W, Zhu S, Ji T, Zhang X, Wang Z, Li G, Liu G, Song J, Mu L, Xiang Z, Song Z, Chen H, Bian Y, Zhang B, Chen H, Zhang J, Liao Y, Zhang L, Yang L, Chen Y, Gilly J, Xiao X, Han L, Jiang H, Xie Y, Zhou Q, Zhu J
Cell Discov (2022) 8 pp. 16-16 [ Pubmed: 35169121 DOI: doi:10.1038/s41421-022-00381-7 ]
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Spike glycoprotein (142 kDa, Protein from Severe acute respiratory syndrome coronavirus)
- Linoleic acid (280 Da, Ligand)
- Heavy chain of 2g1 (49 kDa, Protein from Homo sapiens)
- 2g1 (Complex from Homo sapiens)
- Light chain of 2g1 (22 kDa, Protein from Homo sapiens)
- S protein of sars-cov-2 (Complex from Severe acute respiratory syndrome coronavirus)
- S protein of sars-cov-2 in complex with 2g1 (Complex)
Coxsackievirus B3 full particle at pH7.4 (VP3-234Q)
Resolution: 2.95 Å
EM Method: Single-particle
Fitted PDBs: 7vxh
Q-score: 0.622
Wang Q, Yang Q, Liu C, Wang G, Song H, Shang G, Peng R, Qu X, Liu S, Cui Y, Wang P, Xu W, Zhao X, Qi J, Yang M, Gao GF
PNAS (2022) 119 [ Pubmed: 35046043 DOI: doi:10.1073/pnas.2118590119 ]
- Coxsackievirus b3 (Virus from Coxsackievirus B3)
- Capsid protein vp3 (26 kDa, Protein from Coxsackievirus B3)
- Capsid protein vp2 (28 kDa, Protein from Coxsackievirus B3)
- Capsid protein vp4 (7 kDa, Protein from Coxsackievirus B3)
- Capsid protein vp1 (31 kDa, Protein from Coxsackievirus B3)
- Palmitic acid (256 Da, Ligand)
Coxsackievirus B3 full particle at pH7.4 (VP3-234N)
Resolution: 2.7 Å
EM Method: Single-particle
Fitted PDBs: 7vy0
Q-score: 0.516
Wang Q, Yang Q, Liu C, Wang G, Song H, Shang G, Peng R, Qu X, Liu S, Cui Y, Wang P, Xu W, Zhao X, Qi J, Yang M, Gao GF
PNAS (2022) 119 [ Pubmed: 35046043 DOI: doi:10.1073/pnas.2118590119 ]
- Capsid protein vp1 (31 kDa, Protein from Coxsackievirus B3)
- Coxsackievirus b3 (Virus from Coxsackievirus B3)
- Capsid protein vp4 (7 kDa, Protein from Coxsackievirus B3)
- Palmitic acid (256 Da, Ligand)
- Capsid protein vp2 (28 kDa, Protein from Coxsackievirus B3)
- Capsid protein vp3 (26 kDa, Protein from Coxsackievirus B3)
Resolution: 2.79 Å
EM Method: Single-particle
Fitted PDBs: 7vyk
Q-score: 0.566
Wang Q, Yang Q, Liu C, Wang G, Song H, Shang G, Peng R, Qu X, Liu S, Cui Y, Wang P, Xu W, Zhao X, Qi J, Yang M, Gao GF
PNAS (2022) 119 [ DOI: doi:10.1073/pnas.2118590119 Pubmed: 35046043 ]
- Capsid protein vp3 (26 kDa, Protein from Coxsackievirus B3)
- Coxsackievirus b3 (Complex from Coxsackievirus B3)
- Palmitic acid (256 Da, Ligand)
- Capsid protein vp1 (30 kDa, Protein from Coxsackievirus B3)
- Capsid protein vp1, vp2, vp3, vp4 (Complex from Homo sapiens)
- Capsid protein vp4 (7 kDa, Protein from Coxsackievirus B3)
- Coxsackievirus and adenovirus receptor (25 kDa, Protein from Homo sapiens)
- Capsid protein vp2 (28 kDa, Protein from Coxsackievirus B3)
- Coxsackievirus and adenovirus receptor (Complex)
Resolution: 2.79 Å
EM Method: Single-particle
Fitted PDBs: 7vyl
Q-score: 0.644
Wang Q, Yang Q, Liu C, Wang G, Song H, Shang G, Peng R, Qu X, Liu S, Cui Y, Wang P, Xu W, Zhao X, Qi J, Yang M, Gao GF
PNAS (2022) 119 [ Pubmed: 35046043 DOI: doi:10.1073/pnas.2118590119 ]
- Coxsackievirus and adenovirus receptor (Complex)
- Coxsackievirus and adenovirus receptor (25 kDa, Protein from Homo sapiens)
- Capsid protein vp2 (28 kDa, Protein from Coxsackievirus B3)
- Homo sapiens (Virus from Homo sapiens)
- Capsid protein vp1 (31 kDa, Protein from Coxsackievirus B3)
- Capsid protein vp3 (26 kDa, Protein from Coxsackievirus B3)
- Capsid protein vp4 (7 kDa, Protein from Coxsackievirus B3)
- Coxsackievirus b3 (Complex from Coxsackievirus B3)
Resolution: 2.2 Å
EM Method: Single-particle
Fitted PDBs: 7w14
Q-score: 0.714
Wang Q, Yang Q, Liu C, Wang G, Song H, Shang G, Peng R, Qu X, Liu S, Cui Y, Wang P, Xu W, Zhao X, Qi J, Yang M, Gao GF
PNAS (2022) 119 [ DOI: doi:10.1073/pnas.2118590119 Pubmed: 35046043 ]
- Coxsackievirus and adenovirus receptor (24 kDa, Protein from Homo sapiens)
- Coxsackievirus b3 (Virus from Coxsackievirus B3)
- Capsid protein vp4 (7 kDa, Protein from Coxsackievirus B3)
- Receptor (Complex from Homo sapiens)
- Coxsackievirus b3 incubation with coxsackievirus and adenovirus receptor (Complex)
- Capsid protein vp3 (26 kDa, Protein from Coxsackievirus B3)
- Capsid protein vp1 (31 kDa, Protein from Coxsackievirus B3)
- Capsid protein vp2 (28 kDa, Protein from Coxsackievirus B3)
Coxsackievirus B3 full particle at pH7.4 (VP3-234E)
Resolution: 2.5 Å
EM Method: Single-particle
Fitted PDBs: 7w17
Q-score: 0.574
Wang Q, Yang Q, Liu C, Wang G, Song H, Shang G, Peng R, Qu X, Liu S, Cui Y, Wang P, Xu W, Zhao X, Qi J, Yang M, Gao GF
PNAS (2022) 119 [ Pubmed: 35046043 DOI: doi:10.1073/pnas.2118590119 ]
- Vp3 (26 kDa, Protein from Homo sapiens)
- Coxsackievirus b3 (Virus from Coxsackievirus B3)
- Vp1 (31 kDa, Protein from Homo sapiens)
- Vp4 (7 kDa, Protein from Homo sapiens)
- Vp2 (28 kDa, Protein from Homo sapiens)
- Palmitic acid (256 Da, Ligand)
Human Wntless in complex with Wnt3a
Resolution: 2.2 Å
EM Method: Single-particle
Fitted PDBs: 7drt
Q-score: 0.53
Zhong Q, Zhao Y, Ye F, Xiao Z, Huang G, Xu M, Zhang Y, Zhan X, Sun K, Wang Z, Cheng S, Feng S, Zhao X, Zhang J, Lu P, Xu W, Zhou Q, Ma D
Nat Commun (2021) 12 pp. 4541-4541 [ DOI: doi:10.1038/s41467-021-24731-3 Pubmed: 34315898 ]
- Wnt3a (Complex from Homo sapiens)
- 1,2-dioleoyl-sn-glycero-3-phosphocholine (787 Da, Ligand)
- Cholesterol (386 Da, Ligand)
- 1-o-octadecyl-sn-glycero-3-phosphocholine (510 Da, Ligand)
- Human wntless in complex with wnt3a (Complex from Homo sapiens)
- Water (18 Da, Ligand)
- Protein wntless homolog (62 kDa, Protein from Homo sapiens)
- Wntless (Complex)
- Protein wnt-3a (39 kDa, Protein from Homo sapiens)
- Palmitoleic acid (254 Da, Ligand)