Structure of the NiV F glycoprotein in complex with the 12B2 neutralizing antibody
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 7ki4
Q-score: 0.537
Dang HV, Cross RW, Borisevich V, Bornholdt ZA, West BR, Chan YP, Mire CE, Da Silva SC, Dimitrov AS, Yan L, Amaya M, Navaratnarajah CK, Zeitlin L, Geisbert TW, Broder CC, Veesler D
Nat Struct Mol Biol (2021) 28 pp. 426-434 [ Pubmed: 33927387 DOI: doi:10.1038/s41594-021-00584-8 ]
- 12b2 heavy chain (48 kDa, Protein from Mus musculus)
- Niv f glycoprotein in complex with the 12b2 neutralizing antibody fab fragment (Complex from Nipah virus)
- Fusion glycoprotein f0 (60 kDa, Protein from Nipah virus)
- 12b2 fab light chain (23 kDa, Protein from Mus musculus)
Structure of the HeV F glycoprotein in complex with the 1F5 neutralizing antibody
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 7ki6
Q-score: 0.575
Dang HV, Cross RW, Borisevich V, Bornholdt ZA, West BR, Chan YP, Mire CE, Da Silva SC, Dimitrov AS, Yan L, Amaya M, Navaratnarajah CK, Zeitlin L, Geisbert TW, Broder CC, Veesler D
Nat Struct Mol Biol (2021) 28 pp. 426-434 [ Pubmed: 33927387 DOI: doi:10.1038/s41594-021-00584-8 ]
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Fusion glycoprotein f0 (59 kDa, Protein from Hendra henipavirus)
- 1f5 fab light chain (23 kDa, Protein from Mus musculus)
- 1f5 heavy chain (49 kDa, Protein from Mus musculus)
- Hev f glycoprotein in complex with the 1f5 neutralizing antibody fab fragment (Complex from Hendra henipavirus)
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 6tys
Q-score: 0.478
Dang HV, Chan YP, Park YJ, Snijder J, Da Silva SC, Vu B, Yan L, Feng YR, Rockx B, Geisbert TW, Mire CE, Broder CC, Veesler D
Nat Struct Mol Biol (2019) 26 pp. 980-987 [ DOI: doi:10.1038/s41594-019-0308-9 Pubmed: 31570878 ]
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Fusion glycoprotein f0 (59 kDa, Protein from Nipah virus)
- 5b3 antibody light chain (11 kDa, Protein from Mus musculus)
- Fusion glycoprotein f0 (Complex from Nipah virus)
- 5b3 antibody heavy chain (13 kDa, Protein from Mus musculus)
- Nipah virus fusion (f) glycoprotein in complex with the 5b3 antibody fab fragment (Complex)
- 5b3 antibody (Complex from Mus musculus)
The crosslinked complex of ISWI-nucleosome in the ADP.BeF-bound state
Resolution: 3.37 Å
EM Method: Single-particle
Fitted PDBs: 6jyl
Q-score: 0.452
Yan L, Wu H, Li X, Gao N, Chen Z
Nat Struct Mol Biol (2019) 26 pp. 258-266 [ Pubmed: 30872815 DOI: doi:10.1038/s41594-019-0199-9 ]
- Histone h2b 1.1 (13 kDa, Protein from Xenopus laevis)
- Histone h4 (11 kDa, Protein from Xenopus laevis)
- Histone h2a (13 kDa, Protein from Xenopus laevis)
- Beryllium trifluoride ion (66 Da, Ligand)
- Nucleosome (Complex from Xenopus laevis)
- Iswi (Complex from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Histone h3 (15 kDa, Protein from Xenopus laevis)
- Dna (167-mer) (51 kDa, Protein from Escherichia coli K-12)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Dna (Complex from Escherichia coli K-12)
- Iswi-nucleosome-crosslinked (300 kDa, Complex)
- Dna (167-mer) (51 kDa, DNA from Escherichia coli K-12)
- Iswi chromatin-remodeling complex atpase isw1 (123 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
The complex of ISWI-nucleosome in the ADP.BeF-bound state
Resolution: 3.87 Å
EM Method: Single-particle
Fitted PDBs: 6k1p
Q-score: 0.42
Yan L, Wu H, Li X, Gao N, Chen Z
Nat Struct Mol Biol (2019) 26 pp. 258-266 [ DOI: doi:10.1038/s41594-019-0199-9 Pubmed: 30872815 ]
- Nuleosome (Complex from Xenopus laevis)
- Isw1 (Complex from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Dna (167-mer) (51 kDa, DNA from Escherichia coli K-12)
- Iswi chromatin-remodeling complex atpase isw1 (123 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Histone h2a (13 kDa, Protein from Xenopus laevis)
- Histone h3 (15 kDa, Protein from Xenopus laevis)
- Histone h2b 1.1 (13 kDa, Protein from Xenopus laevis)
- Dna (167-mer) (51 kDa, DNA from Escherichia coli K-12)
- Beryllium trifluoride ion (66 Da, Ligand)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- The complex of iswi-nucleosome in the adp-bef-bound state (300 kDa, Complex)
- Histone h4 (11 kDa, Protein from Xenopus laevis)
- Dna (Complex from Escherichia coli K-12)
the crosslinked complex of ISWI-nucleosome in the ADP-bound state
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 6iro
Q-score: 0.435
Yan L, Wu H, Li X, Gao N, Chen Z
Nat Struct Mol Biol (2019) 26 pp. 258-266 [ Pubmed: 30872815 DOI: doi:10.1038/s41594-019-0199-9 ]
- Dna (167-mer) (51 kDa, DNA from Escherichia coli K-12)
- Histone h2b 1.1 (13 kDa, Protein from Xenopus laevis)
- Dna (167-mer) (51 kDa, DNA from Escherichia coli K-12)
- Histone h3 (15 kDa, Protein from Xenopus laevis)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Histone octamer (Complex from Xenopus laevis)
- Isw1 (Complex from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Dna (Complex from Escherichia coli K-12)
- Iswi chromatin-remodeling complex atpase isw1 (123 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Histone h4 (11 kDa, Protein from Xenopus laevis)
- Histone h2a (13 kDa, Protein from Xenopus laevis)
- The crosslinked complex of iswi-nucleosome in the adp-bound state (Complex)