Vanadate-trapped BSEP in nanodiscs
Resolution: 2.81 Å
EM Method: Single-particle
Fitted PDBs: 8pmj
Q-score: 0.59
Liu H, Irobalieva RN, Kowal J, Ni D, Nosol K, Bang-Sorensen R, Lancien L, Stahlberg H, Stieger B, Locher KP
Nat Commun (2023) 14 pp. 7296-7296 [ DOI: doi:10.1038/s41467-023-43109-1 Pubmed: 37949847 ]
- Vanadate-trapped bsep in nanodiscs (146 kDa, Complex from Homo sapiens)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Bile salt export pump (146 kDa, Protein from Homo sapiens)
- Water (18 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Cholesterol (386 Da, Ligand)
- Vanadate ion (114 Da, Ligand)
Human bile salt export pump (BSEP) in complex with inhibitor GBM in nanodiscs
Resolution: 3.22 Å
EM Method: Single-particle
Fitted PDBs: 8pm6
Q-score: 0.428
Liu H, Irobalieva RN, Kowal J, Ni D, Nosol K, Bang-Sorensen R, Lancien L, Stahlberg H, Stieger B, Locher KP
Nat Commun (2023) 14 pp. 7296-7296 [ Pubmed: 37949847 DOI: doi:10.1038/s41467-023-43109-1 ]
- 5-chloro-n-(2-{4-[(cyclohexylcarbamoyl)sulfamoyl]phenyl}ethyl)-2-methoxybenzamide (494 Da, Ligand)
- The complex of bsep with inhibitor gbm (146 kDa, Complex from Homo sapiens)
- Cholesterol (386 Da, Ligand)
- Bile salt export pump (146 kDa, Protein from Homo sapiens)
Nucleotide-bound BSEP in nanodiscs
Resolution: 2.95 Å
EM Method: Single-particle
Fitted PDBs: 8pmd
Q-score: 0.519
Liu H, Irobalieva RN, Kowal J, Ni D, Nosol K, Bang-Sorensen R, Lancien L, Stahlberg H, Stieger B, Locher KP
Nat Commun (2023) 14 pp. 7296-7296 [ Pubmed: 37949847 DOI: doi:10.1038/s41467-023-43109-1 ]
- Nucleotide-bound bsep in nanodiscs (146 kDa, Complex from Homo sapiens)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
- Water (18 Da, Ligand)
- Bile salt export pump (146 kDa, Protein from Homo sapiens)
Resolution: 2.97 Å
EM Method: Single-particle
Fitted PDBs: 8pg0
Q-score: 0.528
Ciuta AD, Nosol K, Kowal J, Mukherjee S, Ramirez AS, Stieger B, Kossiakoff AA, Locher KP
Nat Commun (2023) 14 pp. 5774-5774 [ DOI: doi:10.1038/s41467-023-41552-8 Pubmed: 37723174 ]
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Bicarbonate ion (61 Da, Ligand)
- Cholesterol (386 Da, Ligand)
- Fab19 (heavy chain, variable region) (25 kDa, Protein from Homo sapiens)
- Solute carrier organic anion transporter family member 1b3 (77 kDa, Protein from Homo sapiens)
- Human oatp1b3 (180 kDa, Complex from Homo sapiens)
- Fab19 (light chain, variable region) (23 kDa, Protein from Homo sapiens)
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 8phw
Q-score: 0.38
Ciuta AD, Nosol K, Kowal J, Mukherjee S, Ramirez AS, Stieger B, Kossiakoff AA, Locher KP
Nat Commun (2023) 14 pp. 5774-5774 [ DOI: doi:10.1038/s41467-023-41552-8 Pubmed: 37723174 ]
- Estrone 3-sulfate (350 Da, Ligand)
- Cholesterol hemisuccinate (486 Da, Ligand)
- Solute carrier organic anion transporter family member 1b1 (Complex from Homo sapiens)
- Fab18 (light chain, variable region) (23 kDa, Protein from Homo sapiens)
- Human oatp1b1 (180 kDa, Complex)
- Solute carrier organic anion transporter family member 1b1 (76 kDa, Protein from Homo sapiens)
- Fab18 (heavy chain, variable region) (24 kDa, Protein from Homo sapiens)
- Fab18 (variable region) (Complex from Homo sapiens)
Nanodisc reconstituted human ABCB1 in complex with MRK16 Fab and vincristine
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 7a69
Q-score: 0.381
Nosol K, Romane K, Irobalieva RN, Alam A, Kowal J, Fujita N, Locher KP
PNAS (2020) 117 pp. 26245-26253 [ Pubmed: 33020312 DOI: doi:10.1073/pnas.2010264117 ]
- Vincristine (824 Da, Ligand)
- Cholesterol (386 Da, Ligand)
- Nanodisc reconstituted human abcb1 in complex with mrk16 fab and vincristine (240 kDa, Complex from Homo sapiens)
- Mrk16 fab-fragment light chain (24 kDa, Protein from Mus musculus)
- Mrk16 fab-fragment heavy chain (23 kDa, Protein from Mus musculus)
- Multidrug resistance protein 1 (141 kDa, Protein from Homo sapiens)
Nanodisc reconstituted, drug-free human ABCB1 in complex with MRK16 Fab
Resolution: 3.9 Å
EM Method: Single-particle
Fitted PDBs: 7a65
Q-score: 0.333
Nosol K, Romane K, Irobalieva RN, Alam A, Kowal J, Fujita N, Locher KP
PNAS (2020) 117 pp. 26245-26253 [ DOI: doi:10.1073/pnas.2010264117 Pubmed: 33020312 ]
- Nanodisc reconstituted, drug-free human abcb1 in complex with mrk16 fab (240 kDa, Complex)
- Mrk16 fab-fragment light and heavy chain (Complex from Mus musculus)
- Mrk16 fab-fragment heavy chain (23 kDa, Protein from Mus musculus)
- Multidrug resistance protein 1 (Complex from Homo sapiens)
- Mrk16 fab-fragment light chain (24 kDa, Protein from Mus musculus)
- Cholesterol (386 Da, Ligand)
- Multidrug resistance protein 1 (141 kDa, Protein from Homo sapiens)
Nanodisc reconstituted human ABCB1 in complex with MRK16 Fab and elacridar
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 7a6c
Q-score: 0.43
Nosol K, Romane K, Irobalieva RN, Alam A, Kowal J, Fujita N, Locher KP
PNAS (2020) 117 pp. 26245-26253 [ DOI: doi:10.1073/pnas.2010264117 Pubmed: 33020312 ]
- If kappa light chain (24 kDa, Protein from Mus musculus)
- Nanodisc reconstituted human abcb1 in complex with mrk16 fab and elacridar (240 kDa, Complex)
- Elacridar (563 Da, Ligand)
- Mrk16 fab-fragment light and heavy chain (Complex from Mus musculus)
- Mrk16 fab-fragment heavy chain (23 kDa, Protein from Mus musculus)
- Multidrug resistance protein 1 (Complex from Homo sapiens)
- Cholesterol (386 Da, Ligand)
- Multidrug resistance protein 1 (141 kDa, Protein from Homo sapiens)
Nanodisc reconstituted human ABCB1 in complex with MRK16 Fab and tariquidar
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 7a6e
Q-score: 0.335
Nosol K, Romane K, Irobalieva RN, Alam A, Kowal J, Fujita N, Locher KP
PNAS (2020) 117 pp. 26245-26253 [ DOI: doi:10.1073/pnas.2010264117 Pubmed: 33020312 ]
- Nanodisc reconstituted human abcb1 in complex with mrk16 fab and tariquidar (240 kDa, Complex)
- Mrk16 fab-fragment light and heavy chain (Complex from Mus musculus)
- Mrk16 fab-fragment heavy chain (23 kDa, Protein from Mus musculus)
- Multidrug resistance protein 1 (Complex from Homo sapiens)
- Mrk16 fab-fragment light chain (24 kDa, Protein from Mus musculus)
- Cholesterol (386 Da, Ligand)
- Multidrug resistance protein 1 (141 kDa, Protein from Homo sapiens)
- Tariquidar (646 Da, Ligand)
Nanodisc reconstituted human ABCB1 in complex with MRK16 Fab and zosuquidar
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 7a6f
Q-score: 0.417
Nosol K, Romane K, Irobalieva RN, Alam A, Kowal J, Fujita N, Locher KP
PNAS (2020) 117 pp. 26245-26253 [ Pubmed: 33020312 DOI: doi:10.1073/pnas.2010264117 ]
- Cholesterol (386 Da, Ligand)
- Nanodisc reconstituted human abcb1 in complex with mrk16 fab and zosuquidar (240 kDa, Complex)
- Multidrug resistance protein 1 (Complex from Homo sapiens)
- Zosuquidar (527 Da, Ligand)
- Mrk16 fab-fragment light chain (24 kDa, Protein from Mus musculus)
- Mrk16 fab-fragment light and heavy chain (Complex from Mus musculus)
- Mrk16 fab-fragment heavy chain (23 kDa, Protein from Mus musculus)
- Multidrug resistance protein 1 (141 kDa, Protein from Homo sapiens)