CryoEM structure of the post-synaptic RAD51 nucleoprotein filament in the presence of ATP and Ca2+
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 8br2
Q-score: 0.573
Appleby R, Bollschweiler D, Chirgadze DY, Joudeh L, Pellegrini L
iScience (2023) 26 pp. 106689-106689 [ Pubmed: 37216117 DOI: doi:10.1016/j.isci.2023.106689 ]
- Post-synaptic rad51 nucleoprotein filament in the presence of atp and ca2+ (Complex from Homo sapiens)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Water (18 Da, Ligand)
- Dna (5'-d(p*tp*gp*gp*ap*gp*gp*tp*gp*cp*ap*tp*cp*gp*ap*gp*cp*tp*cp*gp*c)-3') (6 kDa, DNA from Homo sapiens)
- Dna (5'-d(p*gp*cp*gp*ap*gp*cp*tp*cp*gp*ap*tp*gp*cp*ap*cp*cp*tp*cp*cp*a)-3') (6 kDa, DNA from Homo sapiens)
- Calcium ion (40 Da, Ligand)
- Dna repair protein rad51 homolog 1 (37 kDa, Protein from Homo sapiens)
A. baumannii MsbA in complex with TBT1 decoupler
Resolution: 3.97 Å
EM Method: Single-particle
Fitted PDBs: 7met
Q-score: 0.337
E. coli MsbA in complex with G247
Resolution: 3.9 Å
EM Method: Single-particle
Fitted PDBs: 7mew
Q-score: 0.35
Interleukin-10 signaling complex with IL-10RA and IL-10RB
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 6x93
Q-score: 0.345
Saxton RA, Tsutsumi N, Su LL, Abhiraman GC, Mohan K, Henneberg LT, Aduri NG, Gati C, Garcia KC
Science (2021) 371 [ Pubmed: 33737461 DOI: doi:10.1126/science.abc8433 ]
- Interleukin-10 receptor subunit beta (23 kDa, Protein from Homo sapiens)
- Interleukin-10 (18 kDa, Protein from Homo sapiens)
- Interleukin-10 receptor subunit alpha (24 kDa, Protein from Homo sapiens)
- Il-10rb (Complex from Homo sapiens)
- Interleukin-10, il-10ra (Complex from Homo sapiens)
- Interleukin-10 signaling complex with il-10ra and il-10rb (130 kDa, Complex)
Structure of DPS determined by movement-free cryoEM with zero dose extrapolation
Resolution: 1.9 Å
EM Method: Single-particle
Fitted PDBs: 6zgl
Q-score: 0.786
Science (2020) 370 pp. 223-226 [ DOI: doi:10.1126/science.abb7927 Pubmed: 33033219 ]
- Water (18 Da, Ligand)
- Dna protection during starvation protein (18 kDa, Protein from Escherichia coli)
- Dna protection during starvation protein (dps) (Complex from Escherichia coli)
Resolution: 3.9 Å
EM Method: Single-particle
Fitted PDBs: 6uan
Q-score: 0.425
Kondo Y, Ognjenovic J, Banerjee S, Karandur D, Merk A, Kulhanek K, Wong K, Roose JP, Subramaniam S, Kuriyan J
Science (2019) 366 pp. 109-115 [ DOI: doi:10.1126/science.aay0543 Pubmed: 31604311 ]
- Ternary complex of b-raf kinase domain dimer and 14-3-3 dimer (Complex from Homo sapiens)
- Serine/threonine-protein kinase b-raf (84 kDa, Protein from Homo sapiens)
- 14-3-3 zeta (28 kDa, Protein from Asian cotton leafworm)
Cryo-EM structure of the human P4-type flippase ATP8A1-CDC50 (E1 state class1)
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 6k7g
Q-score: 0.494
Hiraizumi M, Yamashita K, Nishizawa T, Nureki O
Science (2019) 365 pp. 1149-1155 [ DOI: doi:10.1126/science.aay3353 Pubmed: 31416931 ]
- Cholesterol hemisuccinate (486 Da, Ligand)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Phospholipid-transporting atpase (130 kDa, Protein from Homo sapiens)
- Atp8a1-cdc50a (Complex from Homo sapiens)
- Cell cycle control protein 50a (40 kDa, Protein from Homo sapiens)
Cryo-EM structure of the human P4-type flippase ATP8A1-CDC50 (E1 state class2)
Resolution: 3.22 Å
EM Method: Single-particle
Fitted PDBs: 6k7h
Q-score: 0.487
Hiraizumi M, Yamashita K, Nishizawa T, Nureki O
Science (2019) 365 pp. 1149-1155 [ DOI: doi:10.1126/science.aay3353 Pubmed: 31416931 ]
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Cell cycle control protein 50a (40 kDa, Protein from Homo sapiens)
- Phospholipid-transporting atpase (130 kDa, Protein from Homo sapiens)
- Atp8a1-cdc50a (Complex from Homo sapiens)
- Cholesterol hemisuccinate (486 Da, Ligand)
Cryo-EM structure of the human P4-type flippase ATP8A1-CDC50 (E1-ATP state class2)
Resolution: 3.22 Å
EM Method: Single-particle
Fitted PDBs: 6k7i
Q-score: 0.494
Hiraizumi M, Yamashita K, Nishizawa T, Nureki O
Science (2019) 365 pp. 1149-1155 [ DOI: doi:10.1126/science.aay3353 Pubmed: 31416931 ]
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Cell cycle control protein 50a (40 kDa, Protein from Homo sapiens)
- Phospholipid-transporting atpase (130 kDa, Protein from Homo sapiens)
- Phosphomethylphosphonic acid adenylate ester (505 Da, Ligand)
- Atp8a1-cdc50a (Complex from Homo sapiens)
- Cholesterol hemisuccinate (486 Da, Ligand)
Cryo-EM structure of the human P4-type flippase ATP8A1-CDC50 (E1-ATP state class1)
Resolution: 3.08 Å
EM Method: Single-particle
Fitted PDBs: 6k7j
Q-score: 0.526
Hiraizumi M, Yamashita K, Nishizawa T, Nureki O
Science (2019) 365 pp. 1149-1155 [ DOI: doi:10.1126/science.aay3353 Pubmed: 31416931 ]
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Cell cycle control protein 50a (40 kDa, Protein from Homo sapiens)
- Phospholipid-transporting atpase (130 kDa, Protein from Homo sapiens)
- Magnesium ion (24 Da, Ligand)
- Phosphomethylphosphonic acid adenylate ester (505 Da, Ligand)
- Atp8a1-cdc50a (Complex from Homo sapiens)
- Cholesterol hemisuccinate (486 Da, Ligand)