Prefusion RSV F Bound to Lonafarnib and D25 Fab
Yang Q, Xue B, Liu F, Lu Y, Tang J, Yan M, Wu Q, Chen R, Zhou A, Liu L, Liu J, Qu C, Wu Q, Fu M, Zhong J, Dong J, Chen S, Wang F, Zhou Y, Zheng J, Peng W, Shang J, Chen X
Signal Transduct Target Ther (2024) 9 pp. 144-144 [ DOI: doi:10.1038/s41392-024-01858-5 Pubmed: 38853183 ]
- 4-{2-[4-(3,10-dibromo-8-chloro-6,11-dihydro-5h-benzo[5,6]cyclohepta[1,2-b]pyridin-11-yl)piperidin-1-yl]-2-oxoethyl}piperidine-1-carboxamide (638 Da, Ligand)
- Fusion glycoprotein f0,fibritin (64 kDa, Protein from Enterobacteria phage T4)
- Prefusion rsv f bound to lonafarnib and d25 fab (Complex from Human respiratory syncytial virus A (strain A2))
- D25 heavy chain (24 kDa, Protein from Homo sapiens)
- D25 light chain (23 kDa, Protein from Homo sapiens)
Cryo-EM structure of T4 Bacteriophage Clamp Loader with Sliding Clamp
Resolution: 3.21 Å
EM Method: Single-particle
Fitted PDBs: 8unh
Q-score: 0.445
Marcus K, Huang Y, Subramanian S, Gee CL, Gorday K, Ghaffari-Kashani S, Luo XR, Zheng L, O'Donnell M, Subramaniam S, Kuriyan J
Nat Struct Mol Biol (2024) 31 pp. 424-435 [ DOI: doi:10.1038/s41594-023-01177-3 Pubmed: 38177685 ]
- Sliding clamp (24 kDa, Protein from Tequatrovirus T4)
- Sliding-clamp-loader small subunit (21 kDa, Protein from Tequatrovirus T4)
- T4 bacteriophage clamp loader with sliding clamp (Complex from Tequatrovirus T4)
- Phosphothiophosphoric acid-adenylate ester (523 Da, Ligand)
- T4 bacteriophage sliding clamp (gp45) (Complex from Tequatrovirus T4)
- Sliding-clamp-loader large subunit (35 kDa, Protein from Tequatrovirus T4)
- Magnesium ion (24 Da, Ligand)
- T4 bacteriophage clamp loader (gp44 + gp62) (Complex from Tequatrovirus T4)
X-31 Hemagglutinin Precursor HA0 at pH 7.5
Resolution: 2.6 Å
EM Method: Single-particle
Fitted PDBs: 7zj6
Q-score: 0.591
Garcia-Moro E, Zhang J, Calder LJ, Brown NR, Gamblin SJ, Skehel JJ, Rosenthal PB
PNAS (2022) 119 pp. e2208011119-e2208011119 [ DOI: doi:10.1073/pnas.2208011119 Pubmed: 35939703 ]
X-31 Hemagglutinin Precursor HA0 at pH 4.8
Resolution: 3.95 Å
EM Method: Single-particle
Fitted PDBs: 7zj7
Q-score: 0.352
Garcia-Moro E, Zhang J, Calder LJ, Brown NR, Gamblin SJ, Skehel JJ, Rosenthal PB
PNAS (2022) 119 pp. e2208011119-e2208011119 [ DOI: doi:10.1073/pnas.2208011119 Pubmed: 35939703 ]
X-31 Hemagglutinin Precursor HA0 at pH 7.5 after reneutralization
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 7zj8
Q-score: 0.522
Garcia-Moro E, Zhang J, Calder LJ, Brown NR, Gamblin SJ, Skehel JJ, Rosenthal PB
PNAS (2022) 119 pp. e2208011119-e2208011119 [ DOI: doi:10.1073/pnas.2208011119 Pubmed: 35939703 ]
- X-31 hemagglutinin precursor (ha0) (Complex from Influenza A virus (A/Aichi/2/1968(H3N2)))
- Hemagglutinin,fibritin (62 kDa, Protein from Tequatrovirus T4)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Octyl beta-d-glucopyranoside (292 Da, Ligand)
OMI-38 FAB IN COMPLEX WITH SARS-COV-2 BETA SPIKE RBD (local refinement)
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 7zr8
Q-score: 0.47
Nutalai R, Zhou D, Tuekprakhon A, Ginn HM, Supasa P, Liu C, Huo J, Mentzer AJ, Duyvesteyn HME, Dijokaite-Guraliuc A, Skelly D, Ritter TG, Amini A, Bibi S, Adele S, Johnson SA, Constantinides B, Webster H, Temperton N, Klenerman P, Barnes E, Dunachie SJ, Crook D, Pollard AJ, Lambe T, Goulder P, Paterson NG, Williams MA, Hall DR, Mongkolsapaya J, Fry EE, Dejnirattisai W, Ren J, Stuart DI, Screaton GR
Cell (2022) 185 pp. 2116-2131.e18 [ Pubmed: 35662412 DOI: doi:10.1016/j.cell.2022.05.014 ]
- Omi-38 fab heavy chain (12 kDa, Protein from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Omi-38 fab light chain (11 kDa, Protein from Homo sapiens)
- Spike glycoprotein,fibritin (141 kDa, Protein from Enterobacteria phage T4)
- Sars-cov-2 beta spike glycoprotein (Complex from Severe acute respiratory syndrome coronavirus 2)
- Omi-38 fab in complex with sars-cov-2 beta spike glycoprotein (Complex)
- Omi-38 fab (Complex from Homo sapiens)