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EMBL

was set up in 1974 as Europe’s flagship laboratory for the life sciences – an intergovernmental organisation with more than 80 independent research groups covering the spectrum of molecular biology:

Research:

perform basic research in molecular biology

Services:

offer vital services to scientists in the member states

Training

scientists, students and visitors at all levels

Transfer

and development of technology

Develop

new instruments and methods

Integrating

life science research in Europe

More about EMBL

Six sites

represent EMBL in Europe.

Barcelona

Tissue biology and disease modelling

Grenoble

Structural biology

Hamburg

Structural biology

Heidelberg

Main laboratory

Hinxton

EMBL-EBI: European Bioinformatics Institute

Rome

Epigenetics and neurobiology

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initial_angle_assignment_type:"MAXIMUM LIKELIHOOD" AND xref_links:"pdb" AND assembly_molecular_weight:{2000000 TO 5000000] AND author_name:"Becker T" AND resolution:[4 TO 5}

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EMD-14921

Download Map 3D View

Structure of the RQT-bound 80S ribosome from S. cerevisiae (C2) - composite map

Release date: Feb. 22, 2023
Resolution: 4.8 Å
EM Method: Single-particle
Fitted PDBs: 7zrs
Q-score: 0.49

Best K, Ikeuchi K, Kater L, Best D, Musial J, Matsuo Y, Berninghausen O, Becker T, Inada T, Beckmann R

Nat Commun (2023) 14 pp. 921-921 [ Pubmed: 36801861 DOI: doi:10.1038/s41467-023-36230-8 ]

Sample:

Rps2 isoform 1 (23 kDa, Protein from baker's yeast)
25s ribosomal rna (1 MDa, RNA from baker's yeast)
Rpl5 isoform 1 (33 kDa, Protein from baker's yeast)
60s ribosomal protein l31-a (12 kDa, Protein from baker's yeast)
60s ribosomal protein l25 (13 kDa, Protein from baker's yeast)
40s ribosomal protein s7-a (21 kDa, Protein from baker's yeast)
60s ribosomal protein l19-a (21 kDa, Protein from baker's yeast)
Ribosome (Complex from Saccharomyces cerevisiae)
Rps22a isoform 1 (14 kDa, Protein from baker's yeast)
60s ribosomal protein l36-a (11 kDa, Protein from baker's yeast)
Rpl38 isoform 1 (8 kDa, Protein from baker's yeast)
40s ribosomal protein s25 (9 kDa, Protein from baker's yeast)
60s ribosomal protein l23-a (14 kDa, Protein from baker's yeast)
Rps5p (22 kDa, Protein from baker's yeast)
40s ribosomal protein s30-a (6 kDa, Protein from baker's yeast)
Rps31 isoform 1 (8 kDa, Protein from baker's yeast)
40s ribosomal protein s10-a (11 kDa, Protein from baker's yeast)
Rpl4a isoform 1 (39 kDa, Protein from baker's yeast)
40s ribosomal protein s12 (13 kDa, Protein from baker's yeast)
60s ribosomal protein l28 (16 kDa, Protein from baker's yeast)
40s ribosomal protein s14-b (13 kDa, Protein from baker's yeast)
60s ribosomal protein l34-a (12 kDa, Protein from baker's yeast)
40s ribosomal protein s9-a (21 kDa, Protein from baker's yeast)
Trna (24 kDa, RNA from baker's yeast)
40s ribosomal protein s6-a (26 kDa, Protein from baker's yeast)
60s ribosomal protein l30 (10 kDa, Protein from baker's yeast)
60s ribosomal protein l20-a (20 kDa, Protein from baker's yeast)
Rps29a isoform 1 (6 kDa, Protein from baker's yeast)
60s ribosomal protein l29 (6 kDa, Protein from baker's yeast)
Guanine nucleotide-binding protein subunit beta-like protein (34 kDa, Protein from baker's yeast)
40s ribosomal protein s1-a (28 kDa, Protein from baker's yeast)
40s ribosomal protein s0-a (22 kDa, Protein from baker's yeast)
40s ribosomal protein s18-a (16 kDa, Protein from baker's yeast)
Rpl41a isoform 1 (3 kDa, Protein from baker's yeast)
60s ribosomal protein l9-a (21 kDa, Protein from baker's yeast)
Rpl11b isoform 1 (19 kDa, Protein from baker's yeast)
60s ribosomal protein l33-a (12 kDa, Protein from baker's yeast)
60s ribosomal protein l40-a (6 kDa, Protein from baker's yeast)
60s ribosomal protein l21-a (18 kDa, Protein from baker's yeast)
60s ribosomal protein l39 (6 kDa, Protein from baker's yeast)
60s ribosomal protein l18-a (20 kDa, Protein from baker's yeast)
5.8s ribosomal rna (50 kDa, RNA from baker's yeast)
60s ribosomal protein l27-a (15 kDa, Protein from baker's yeast)
40s ribosomal protein s27-a (8 kDa, Protein from baker's yeast)
60s ribosomal protein l17-a (20 kDa, Protein from baker's yeast)
Rpl24a isoform 1 (14 kDa, Protein from baker's yeast)
Rps26b isoform 1 (11 kDa, Protein from baker's yeast)
40s ribosomal protein s21-a (9 kDa, Protein from baker's yeast)
60s ribosomal protein l42-a (11 kDa, Protein from baker's yeast)
Rps15 isoform 1 (13 kDa, Protein from baker's yeast)
Rps28a isoform 1 (7 kDa, Protein from baker's yeast)
40s ribosomal protein s4-a (29 kDa, Protein from baker's yeast)
60s ribosomal protein l43-a (9 kDa, Protein from baker's yeast)
5s ribosomal rna (38 kDa, RNA from baker's yeast)
40s ribosomal protein s24-a (15 kDa, Protein from baker's yeast)
40s ribosomal protein s19-a (15 kDa, Protein from baker's yeast)
40s ribosomal protein s23-a (15 kDa, Protein from baker's yeast)
60s ribosomal protein l14-a (14 kDa, Protein from baker's yeast)
Zinc ion (65 Da, Ligand)
Rpl10 isoform 1 (25 kDa, Protein from baker's yeast)
40s ribosomal protein s16-a (15 kDa, Protein from baker's yeast)
60s ribosomal protein l2-a (27 kDa, Protein from baker's yeast)
60s ribosomal protein l35-a (13 kDa, Protein from baker's yeast)
60s ribosomal protein l8-a (25 kDa, Protein from baker's yeast)
18s ribosomal rna (579 kDa, RNA from baker's yeast)
60s ribosomal protein l6-b (20 kDa, Protein from baker's yeast)
40s ribosomal protein s13 (16 kDa, Protein from baker's yeast)
60s ribosomal protein l7-a (25 kDa, Protein from baker's yeast)
40s ribosomal protein s17-a (15 kDa, Protein from baker's yeast)
40s ribosomal protein s8-a (22 kDa, Protein from baker's yeast)
40s ribosomal protein s11-a (16 kDa, Protein from baker's yeast)
Rps20 isoform 1 (11 kDa, Protein from baker's yeast)
Magnesium ion (24 Da, Ligand)
Rqt complex (slh1, cue3 and rqt4) (Complex from Saccharomyces cerevisiae)
Rqc trigger complex helicase slh1 (225 kDa, Protein from Saccharomyces cerevisiae)
Rpl32 isoform 1 (14 kDa, Protein from baker's yeast)
Rqc trigger complex subunit rqt4 (60 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l22-a (11 kDa, Protein from baker's yeast)
60s ribosomal protein l26-a (14 kDa, Protein from baker's yeast)
Ribosome with bound rqt components (slh1, cue3 and rqt4) (Complex)
Rps3 isoform 1 (24 kDa, Protein from baker's yeast)
60s ribosomal protein l15-a (24 kDa, Protein from baker's yeast)
60s ribosomal protein l16-a (22 kDa, Protein from baker's yeast)
60s ribosomal protein l13-a (21 kDa, Protein from baker's yeast)
60s ribosomal protein l37-a (9 kDa, Protein from baker's yeast)
Rqc trigger complex subunit cue3 (34 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l3 (43 kDa, Protein from baker's yeast)

[Show more]

EMD-14978

Download Map 3D View

Structure of RQT (C1) bound to the stalled ribosome in a disome unit from S. cerevisiae

Release date: Feb. 22, 2023
Resolution: 4.3 Å
EM Method: Single-particle
Fitted PDBs: 7zuw
Q-score: 0.447

Best K, Ikeuchi K, Kater L, Best D, Musial J, Matsuo Y, Berninghausen O, Becker T, Inada T, Beckmann R

Nat Commun (2023) 14 pp. 921-921 [ Pubmed: 36801861 DOI: doi:10.1038/s41467-023-36230-8 ]

Sample:

60s ribosomal protein l19-a (21 kDa, Protein from baker's yeast)
40s ribosomal protein s21-a (9 kDa, Protein from baker's yeast)
40s ribosomal protein s1-a (28 kDa, Protein from baker's yeast)
60s ribosomal protein l30 (10 kDa, Protein from baker's yeast)
60s ribosomal protein l31-a (12 kDa, Protein from baker's yeast)
40s ribosomal protein s25 (9 kDa, Protein from baker's yeast)
60s ribosomal protein l20-a (20 kDa, Protein from baker's yeast)
Rpl5 isoform 1 (33 kDa, Protein from baker's yeast)
60s ribosomal protein l33-a (12 kDa, Protein from baker's yeast)
60s ribosomal protein l37-a (9 kDa, Protein from baker's yeast)
Rps5p (22 kDa, Protein from baker's yeast)
Rpl9a isoform 1 (21 kDa, Protein from baker's yeast)
Ribosome (Complex from Saccharomyces cerevisiae)
25s ribosomal rna (1 MDa, RNA from Saccharomyces cerevisiae)
60s ribosomal protein l29 (6 kDa, Protein from baker's yeast)
40s ribosomal protein s11-a (16 kDa, Protein from baker's yeast)
40s ribosomal protein s17-a (15 kDa, Protein from baker's yeast)
60s ribosomal protein l13-a (21 kDa, Protein from baker's yeast)
60s ribosomal protein l14-a (14 kDa, Protein from baker's yeast)
60s ribosomal protein l8 (25 kDa, Protein from baker's yeast)
40s ribosomal protein s14-b (13 kDa, Protein from baker's yeast)
60s ribosomal protein l21-a (18 kDa, Protein from baker's yeast)
60s ribosomal protein l34-a (12 kDa, Protein from baker's yeast)
40s ribosomal protein s9-a (21 kDa, Protein from baker's yeast)
40s ribosomal protein s16-a (15 kDa, Protein from baker's yeast)
Rpl38 isoform 1 (8 kDa, Protein from baker's yeast)
60s ribosomal protein l27-a (15 kDa, Protein from baker's yeast)
60s ribosomal protein l17-a (20 kDa, Protein from baker's yeast)
Rpl24a isoform 1 (14 kDa, Protein from baker's yeast)
Rpl11b isoform 1 (19 kDa, Protein from baker's yeast)
40s ribosomal protein s27-a (8 kDa, Protein from baker's yeast)
Trna (24 kDa, RNA from Saccharomyces cerevisiae)
60s ribosomal protein l16-a (22 kDa, Protein from baker's yeast)
40s ribosomal protein s7-a (21 kDa, Protein from baker's yeast)
60s ribosomal protein l36-a (11 kDa, Protein from baker's yeast)
60s ribosomal protein l22-a (11 kDa, Protein from baker's yeast)
Rqc trigger complex with slh1, cue3, rqt4 (Complex from Saccharomyces cerevisiae)
60s ribosomal protein l25 (13 kDa, Protein from baker's yeast)
Rps15 isoform 1 (13 kDa, Protein from baker's yeast)
Rqc trigger complex helicase slh1 (225 kDa, Protein from Saccharomyces cerevisiae)
Rps3 isoform 1 (24 kDa, Protein from baker's yeast)
40s ribosomal protein s23-a (15 kDa, Protein from baker's yeast)
5.8s ribosomal rna (50 kDa, RNA from Saccharomyces cerevisiae)
Rps31 isoform 1 (8 kDa, Protein from baker's yeast)
40s ribosomal protein s0-a (22 kDa, Protein from baker's yeast)
60s ribosomal protein l39 (6 kDa, Protein from baker's yeast)
Rpl4a isoform 1 (39 kDa, Protein from baker's yeast)
60s ribosomal protein l18-a (20 kDa, Protein from baker's yeast)
60s ribosomal protein l42-a (11 kDa, Protein from baker's yeast)
60s ribosomal protein l7-a (25 kDa, Protein from baker's yeast)
Rps2 isoform 1 (23 kDa, Protein from baker's yeast)
60s ribosomal protein l26-a (14 kDa, Protein from baker's yeast)
40s ribosomal protein s12 (13 kDa, Protein from baker's yeast)
Magnesium ion (24 Da, Ligand)
Rps22a isoform 1 (14 kDa, Protein from baker's yeast)
Rps28a isoform 1 (7 kDa, Protein from baker's yeast)
60s ribosomal protein l41 (3 kDa, Protein from baker's yeast)
18s ribosomal rna (579 kDa, RNA from Saccharomyces cerevisiae)
40s ribosomal protein s18-a (16 kDa, Protein from baker's yeast)
60s ribosomal protein l40-a (6 kDa, Protein from baker's yeast)
Rqc trigger complex subunit rqt4 (60 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l6-b (20 kDa, Protein from baker's yeast)
5s ribosomal rna (38 kDa, RNA from Saccharomyces cerevisiae)
Rps20 isoform 1 (11 kDa, Protein from baker's yeast)
60s ribosomal protein l2-a (27 kDa, Protein from baker's yeast)
Guanine nucleotide-binding protein subunit beta-like protein (34 kDa, Protein from baker's yeast)
40s ribosomal protein s26 (11 kDa, Protein from baker's yeast)
40s ribosomal protein s10-a (11 kDa, Protein from baker's yeast)
40s ribosomal protein s6-a (26 kDa, Protein from baker's yeast)
40s ribosomal protein s4-a (29 kDa, Protein from baker's yeast)
Rpl10 isoform 1 (25 kDa, Protein from baker's yeast)
60s ribosomal protein l35-a (13 kDa, Protein from baker's yeast)
Rqc trigger complex bound to the stalled ribosome of a disome unit (Complex from Saccharomyces cerevisiae)
40s ribosomal protein s8-b (22 kDa, Protein from baker's yeast)
Zinc ion (65 Da, Ligand)
Cue3 isoform 1 (34 kDa, Protein from Saccharomyces cerevisiae)
Ribosomal protein l15 (24 kDa, Protein from baker's yeast)
40s ribosomal protein s19-a (15 kDa, Protein from baker's yeast)
60s ribosomal protein l23-a (14 kDa, Protein from baker's yeast)
60s ribosomal protein l28 (16 kDa, Protein from baker's yeast)
Rpl32 isoform 1 (14 kDa, Protein from baker's yeast)
60s ribosomal protein l43-a (9 kDa, Protein from baker's yeast)
40s ribosomal protein s13 (16 kDa, Protein from baker's yeast)
Rps29a isoform 1 (6 kDa, Protein from baker's yeast)
60s ribosomal protein l3 (43 kDa, Protein from baker's yeast)
40s ribosomal protein s24-a (15 kDa, Protein from baker's yeast)
40s ribosomal protein s30-a (6 kDa, Protein from baker's yeast)

[Show more]

Sort by: Download

Showing 1 - 2 of 2. Page 1 of 1

Display: Statistics

Download

Select database:

EMDB [2]

Format:

Select the script type:

Shell (Unix-based) Batch (Windows-based)

Preview first 10

Field: