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EMBL

was set up in 1974 as Europe’s flagship laboratory for the life sciences – an intergovernmental organisation with more than 80 independent research groups covering the spectrum of molecular biology:

Research:

perform basic research in molecular biology

Services:

offer vital services to scientists in the member states

Training

scientists, students and visitors at all levels

Transfer

and development of technology

Develop

new instruments and methods

Integrating

life science research in Europe

More about EMBL

Six sites

represent EMBL in Europe.

Barcelona

Tissue biology and disease modelling

Grenoble

Structural biology

Hamburg

Structural biology

Heidelberg

Main laboratory

Hinxton

EMBL-EBI: European Bioinformatics Institute

Rome

Epigenetics and neurobiology

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initial_angle_assignment_type:"MAXIMUM LIKELIHOOD" AND xref_links:"pdb" AND assembly_molecular_weight:{2000000 TO 5000000] AND author_name:"Morgan CE" AND release_date:[2020-01-01T00:00:00Z TO 2020-12-31T23:59:59Z]

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EMD-21030

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Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S with P-site tRNA

Release date: Feb. 5, 2020
Resolution: 3.04 Å
EM Method: Single-particle
Fitted PDBs: 6v39
Q-score: 0.484

Morgan CE, Huang W, Rudin SD, Taylor DJ, Kirby JE, Bonomo RA, Yu EW

Mbio (2020) 11 [ DOI: doi:10.1128/mBio.03117-19 Pubmed: 31964740 ]

Sample:

16s ribosomal rna (500 kDa, RNA from Acinetobacter baumannii AB0057)
50s ribosomal protein l23 (11 kDa, Protein from Acinetobacter baumannii (strain AB0057))
30s ribosomal protein s12 (13 kDa, Protein from Acinetobacter baumannii (strain AB0057))
50s ribosomal protein l36 (4 kDa, Protein from Acinetobacter sp. ANC 4470)
23s ribosomal rna (945 kDa, RNA from Acinetobacter baumannii AB0057)
50s ribosomal protein l21 (11 kDa, Protein from Acinetobacter baumannii (strain AB0057))
30s ribosomal protein s8 (14 kDa, Protein from Acinetobacter baumannii (strain AB0057))
50s ribosomal protein l17 (14 kDa, Protein from Acinetobacter baumannii (strain AB0057))
30s ribosomal protein s7 (17 kDa, Protein from Acinetobacter baumannii (strain AB0057))
30s ribosomal protein s14 (11 kDa, Protein from Acinetobacter baumannii (strain AB0057))
30s ribosomal protein s15 (10 kDa, Protein from Acinetobacter baumannii (strain AB0057))
50s ribosomal protein l5 (20 kDa, Protein from Acinetobacter baumannii (strain AB0057))
N-formylmethionine (177 Da, Ligand)
50s ribosomal protein l29 (7 kDa, Protein from Acinetobacter baumannii (strain AB0057))
30s ribosomal protein s3 (27 kDa, Protein from Acinetobacter baumannii)
30s ribosomal protein s4 (23 kDa, Protein from Acinetobacter baumannii (strain AB0057))
Sodium ion (22 Da, Ligand)
50s ribosomal protein l4 (21 kDa, Protein from Acinetobacter baumannii (strain AB0057))
50s ribosomal protein l3 (22 kDa, Protein from Acinetobacter baumannii (strain AB0057))
50s ribosomal protein l30 (6 kDa, Protein from Acinetobacter sp. CIP 102082)
30s ribosomal protein s19 (10 kDa, Protein from Acinetobacter baumannii (strain AB0057))
30s ribosomal protein s13 (13 kDa, Protein from Acinetobacter baumannii (strain AB0057))
50s ribosomal protein l33 (6 kDa, Protein from Acinetobacter sp. CIP 51.11)
50s ribosomal protein l20 (13 kDa, Protein from Acinetobacter baumannii)
30s ribosomal protein s11 (13 kDa, Protein from Acinetobacter sp. 263903-1)
30s ribosomal protein s21 (8 kDa, Protein from Acinetobacter sp. 263903-1)
30s ribosomal protein s2 (27 kDa, Protein from Acinetobacter baumannii)
Zinc ion (65 Da, Ligand)
50s ribosomal protein l27 (9 kDa, Protein from Acinetobacter baumannii (strain AB0057))
50s ribosomal protein l25 (10 kDa, Protein from Acinetobacter baumannii (strain AB0057))
50s ribosomal protein l15 (15 kDa, Protein from Acinetobacter baumannii (strain AB0057))
30s ribosomal protein s9 (14 kDa, Protein from Acinetobacter baumannii)
50s ribosomal protein l14 (13 kDa, Protein from Acinetobacter sp. NIPH 899)
50s ribosomal protein l19 (13 kDa, Protein from Acinetobacter baumannii (strain AB0057))
50s ribosomal protein l35 (7 kDa, Protein from Acinetobacter baumannii (strain AB0057))
Mrna 5'-aug-3' (935 Da, RNA from Acinetobacter baumannii AB0057)
50s ribosomal protein l18 (12 kDa, Protein from Acinetobacter baumannii (strain AB0057))
30s ribosomal protein s5 (17 kDa, Protein from Acinetobacter baumannii (strain AB0057))
Water (18 Da, Ligand)
50s ribosomal protein l22 (11 kDa, Protein from Acinetobacter sp. 809848)
Magnesium ion (24 Da, Ligand)
50s ribosomal protein l2 (30 kDa, Protein from Acinetobacter baumannii (strain AB0057))
50s ribosomal protein l16 (15 kDa, Protein from Acinetobacter baumannii (strain AB0057))
30s ribosomal protein s16 (11 kDa, Protein from Acinetobacter baumannii)
50s ribosomal protein l6 (19 kDa, Protein from Acinetobacter baumannii (strain AB0057))
50s ribosomal protein l28 (9 kDa, Protein from Acinetobacter rudis CIP 110305)
30s ribosomal protein s18 (9 kDa, Protein from Acinetobacter venetianus)
30s ribosomal protein s20 (9 kDa, Protein from Acinetobacter baumannii (strain AB0057))
50s ribosomal protein l24 (11 kDa, Protein from Acinetobacter baumannii (strain AB0057))
50s ribosomal protein l34 (5 kDa, Protein from Acinetobacter beijerinckii ANC 3835)
50s ribosomal protein l32 (7 kDa, Protein from Acinetobacter baumannii (strain AB0057))
50s ribosomal protein l9 (15 kDa, Protein from Acinetobacter baumannii (strain AB0057))
30s ribosomal protein s17 (9 kDa, Protein from Acinetobacter baumannii (strain AB0057))
Trna-met (24 kDa, RNA from Acinetobacter baumannii AB0057)
5s ribosomal rna (36 kDa, RNA from Acinetobacter baumannii)
30s ribosomal protein s10 (11 kDa, Protein from Acinetobacter sp. ANC 5600)
Acinetobacter baumannii 70s ribosome with p-site trna (2 MDa, Complex from Acinetobacter baumannii AB0057)
30s ribosomal protein s6 (14 kDa, Protein from Acinetobacter baumannii (strain AB0057))
50s ribosomal protein l13 (15 kDa, Protein from Acinetobacter baumannii (strain AB0057))

[Show more]

EMD-21032

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Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S in Empty state

Release date: Feb. 5, 2020
Resolution: 2.91 Å
EM Method: Single-particle
Fitted PDBs: 6v3b
Q-score: 0.515

Morgan CE, Huang W, Rudin SD, Taylor DJ, Kirby JE, Bonomo RA, Yu EW

Mbio (2020) 11 [ DOI: doi:10.1128/mBio.03117-19 Pubmed: 31964740 ]

Sample:

16s ribosomal rna (500 kDa, RNA from Acinetobacter baumannii AB0057)
50s ribosomal protein l23 (11 kDa, Protein from Acinetobacter baumannii (strain AB0057))
30s ribosomal protein s12 (13 kDa, Protein from Acinetobacter baumannii (strain AB0057))
50s ribosomal protein l36 (4 kDa, Protein from Acinetobacter sp. ANC 4470)
23s ribosomal rna (945 kDa, RNA from Acinetobacter baumannii AB0057)
50s ribosomal protein l21 (11 kDa, Protein from Acinetobacter baumannii (strain AB0057))
30s ribosomal protein s8 (14 kDa, Protein from Acinetobacter baumannii (strain AB0057))
50s ribosomal protein l17 (14 kDa, Protein from Acinetobacter baumannii (strain AB0057))
30s ribosomal protein s7 (17 kDa, Protein from Acinetobacter baumannii (strain AB0057))
30s ribosomal protein s14 (11 kDa, Protein from Acinetobacter baumannii (strain AB0057))
30s ribosomal protein s15 (10 kDa, Protein from Acinetobacter baumannii (strain AB0057))
50s ribosomal protein l5 (20 kDa, Protein from Acinetobacter baumannii (strain AB0057))
50s ribosomal protein l29 (7 kDa, Protein from Acinetobacter baumannii (strain AB0057))
30s ribosomal protein s3 (27 kDa, Protein from Acinetobacter baumannii)
30s ribosomal protein s4 (23 kDa, Protein from Acinetobacter baumannii (strain AB0057))
Sodium ion (22 Da, Ligand)
50s ribosomal protein l4 (21 kDa, Protein from Acinetobacter baumannii (strain AB0057))
50s ribosomal protein l3 (22 kDa, Protein from Acinetobacter baumannii (strain AB0057))
50s ribosomal protein l30 (6 kDa, Protein from Acinetobacter sp. CIP 102082)
30s ribosomal protein s19 (10 kDa, Protein from Acinetobacter baumannii (strain AB0057))
30s ribosomal protein s13 (13 kDa, Protein from Acinetobacter baumannii (strain AB0057))
50s ribosomal protein l33 (6 kDa, Protein from Acinetobacter sp. CIP 51.11)
50s ribosomal protein l20 (13 kDa, Protein from Acinetobacter baumannii)
30s ribosomal protein s11 (13 kDa, Protein from Acinetobacter sp. 263903-1)
30s ribosomal protein s21 (8 kDa, Protein from Acinetobacter sp. 263903-1)
30s ribosomal protein s2 (27 kDa, Protein from Acinetobacter baumannii)
Zinc ion (65 Da, Ligand)
50s ribosomal protein l27 (9 kDa, Protein from Acinetobacter baumannii (strain AB0057))
50s ribosomal protein l25 (10 kDa, Protein from Acinetobacter baumannii (strain AB0057))
50s ribosomal protein l15 (15 kDa, Protein from Acinetobacter baumannii (strain AB0057))
30s ribosomal protein s9 (14 kDa, Protein from Acinetobacter baumannii)
50s ribosomal protein l14 (13 kDa, Protein from Acinetobacter sp. NIPH 899)
50s ribosomal protein l19 (13 kDa, Protein from Acinetobacter baumannii (strain AB0057))
50s ribosomal protein l35 (7 kDa, Protein from Acinetobacter baumannii (strain AB0057))
50s ribosomal protein l18 (12 kDa, Protein from Acinetobacter baumannii (strain AB0057))
30s ribosomal protein s5 (17 kDa, Protein from Acinetobacter baumannii (strain AB0057))
Water (18 Da, Ligand)
50s ribosomal protein l22 (11 kDa, Protein from Acinetobacter sp. 809848)
Magnesium ion (24 Da, Ligand)
50s ribosomal protein l2 (30 kDa, Protein from Acinetobacter baumannii (strain AB0057))
50s ribosomal protein l16 (15 kDa, Protein from Acinetobacter baumannii (strain AB0057))
30s ribosomal protein s16 (11 kDa, Protein from Acinetobacter baumannii)
50s ribosomal protein l6 (19 kDa, Protein from Acinetobacter baumannii (strain AB0057))
50s ribosomal protein l28 (9 kDa, Protein from Acinetobacter rudis CIP 110305)
30s ribosomal protein s18 (9 kDa, Protein from Acinetobacter venetianus)
30s ribosomal protein s20 (9 kDa, Protein from Acinetobacter baumannii (strain AB0057))
50s ribosomal protein l24 (11 kDa, Protein from Acinetobacter baumannii (strain AB0057))
50s ribosomal protein l34 (5 kDa, Protein from Acinetobacter beijerinckii ANC 3835)
50s ribosomal protein l32 (7 kDa, Protein from Acinetobacter baumannii (strain AB0057))
50s ribosomal protein l9 (15 kDa, Protein from Acinetobacter baumannii (strain AB0057))
30s ribosomal protein s17 (9 kDa, Protein from Acinetobacter baumannii (strain AB0057))
Acinetobacter baumannii 70s ribosome with no trna bound (2 MDa, Complex from Acinetobacter baumannii AB0057)
5s ribosomal rna (36 kDa, RNA from Acinetobacter baumannii)
30s ribosomal protein s10 (11 kDa, Protein from Acinetobacter sp. ANC 5600)
30s ribosomal protein s6 (14 kDa, Protein from Acinetobacter baumannii (strain AB0057))
50s ribosomal protein l13 (15 kDa, Protein from Acinetobacter baumannii (strain AB0057))

[Show more]

Sort by: Download

Showing 1 - 2 of 2. Page 1 of 1

Display: Statistics

Download

Select database:

EMDB [2]

Format:

Select the script type:

Shell (Unix-based) Batch (Windows-based)

Preview first 10

Field: