Electron Microscopy Data Bank

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initial_angle_assignment_type:"MAXIMUM LIKELIHOOD" AND xref_links:"pdb" AND assembly_molecular_weight:{2000000 TO 5000000] AND citation_journal_name:"ELIFE" AND electron_source:"FIELD EMISSION GUN" AND film_detector_model:"GATAN K2 SUMMIT (4K X 4K)"

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EMD-31465

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human delta-METTL18 60S ribosome

Release date: June 22, 2022
Resolution: 2.72 Å
EM Method: Single-particle
Fitted PDBs: 7f5s
Q-score: 0.561

Matsuura-Suzuki E, Shimazu T, Takahashi M, Kotoshiba K, Suzuki T, Kashiwagi K, Sohtome Y, Akakabe M, Sodeoka M, Dohmae N, Ito T, Shinkai Y, Iwasaki S

eLife (2022) 11 [ DOI: doi:10.7554/eLife.72780 Pubmed: 35674491 ]

Sample:

60s ribosomal protein l39 (6 kDa, Protein from Human)
5.8s rrna (50 kDa, RNA from Human)
60s ribosomal protein l41 (3 kDa, Protein from Human)
60s ribosomal protein l23 (14 kDa, Protein from Human)
60s ribosomal protein l9 (21 kDa, Protein from Human)
60s ribosomal protein l30 (12 kDa, Protein from Human)
60s ribosomal protein l8 (28 kDa, Protein from Human)
60s ribosomal protein l35 (14 kDa, Protein from Human)
60s ribosomal protein l24 (17 kDa, Protein from Human)
60s ribosomal protein l3 (46 kDa, Protein from Human)
60s ribosomal protein l29 (17 kDa, Protein from Human)
60s ribosomal protein l31 (14 kDa, Protein from Human)
60s ribosomal protein l6 (32 kDa, Protein from Human)
60s ribosomal protein l36a (12 kDa, Protein from Human)
60s (Complex from Homo sapiens)
60s ribosomal protein l34 (13 kDa, Protein from Human)
60s ribosomal protein l36 (12 kDa, Protein from Human)
Zinc ion (65 Da, Ligand)
60s ribosomal protein l11 (20 kDa, Protein from Human)
60s ribosomal protein l13a (23 kDa, Protein from Human)
60s ribosomal protein l5 (34 kDa, Protein from Human)
60s ribosomal protein l15 (24 kDa, Protein from Human)
60s ribosomal protein l23a (17 kDa, Protein from Human)
60s ribosomal protein l27 (15 kDa, Protein from Human)
60s ribosomal protein l4 (47 kDa, Protein from Human)
28s rrna (1 MDa, RNA from Human)
60s ribosomal protein l7a (30 kDa, Protein from Human)
Water (18 Da, Ligand)
60s ribosomal protein l10 (24 kDa, Protein from Human)
60s ribosomal protein l26 (17 kDa, Protein from Human)
Ubiquitin-60s ribosomal protein l40 (14 kDa, Protein from Human)
60s ribosomal protein l18 (21 kDa, Protein from Human)
60s ribosomal protein l32 (15 kDa, Protein from Human)
60s ribosomal protein l37a (10 kDa, Protein from Human)
Magnesium ion (24 Da, Ligand)
5s rrna (38 kDa, RNA from Human)
60s ribosomal protein l18a (20 kDa, Protein from Human)
60s ribosomal protein l21 (18 kDa, Protein from Human)
60s ribosomal protein l14 (23 kDa, Protein from Human)
60s ribosomal protein l22 (14 kDa, Protein from Human)
60s ribosomal protein l17 (21 kDa, Protein from Human)
60s ribosomal protein l7 (29 kDa, Protein from Human)
60s ribosomal protein l13 (24 kDa, Protein from Human)
60s ribosomal protein l35a (12 kDa, Protein from Human)
60s ribosomal protein l28 (15 kDa, Protein from Human)
60s ribosomal protein l19 (23 kDa, Protein from Human)
60s ribosomal protein l27a (16 kDa, Protein from Human)
60s ribosomal protein l37 (11 kDa, Protein from Human)
60s ribosomal protein l38 (8 kDa, Protein from Human)

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EMD-22616

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Cryo-EM structure of rabbit RyR1 in the presence of AMP-PCP in nanodisc

Release date: Sept. 22, 2021
Resolution: 4.3 Å
EM Method: Single-particle
Fitted PDBs: 7k0t
Q-score: 0.332

Nayak AR, Samso M

eLife (2022) 11 [ DOI: doi:10.7554/eLife.75568 Pubmed: 35257661 ]

Sample:

Rabbit ryr1 with amp-pcp (2 MDa, Complex from Oryctolagus cuniculus)
Ryr1 (533 kDa, Protein from Oryctolagus cuniculus)
Phosphomethylphosphonic acid adenylate ester (505 Da, Ligand)
Zinc ion (65 Da, Ligand)

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EMD-12877

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Human mitochondrial ribosome in complex with P/E-tRNA

Release date: June 23, 2021
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 7og4
Q-score: 0.348

Aibara S, Singh V, Modelska A, Amunts A

eLife (2020) 9 [ DOI: doi:10.7554/eLife.58362 Pubmed: 32812867 ]

Sample:

28s ribosomal protein s25, mitochondrial (20 kDa, Protein from Human)
39s ribosomal protein l49, mitochondrial (19 kDa, Protein from Human)
Growth arrest and dna damage-inducible proteins-interacting protein 1 (25 kDa, Protein from Human)
39s ribosomal protein l32, mitochondrial (21 kDa, Protein from Human)
39s ribosomal protein l21, mitochondrial (22 kDa, Protein from Human)
5-(2-diethylamino-ethanesulfonyl)-21-hydroxy-10-isopropyl-11,19-dimethyl-9,26-dioxa-3,15,28-triaza-tricyclo[23.2.1.00,255]octacosa-1(27),12,17,19,25(28)-pentaene-2,8,14,23-tetraone (690 Da, Ligand)
39s ribosomal protein l55, mitochondrial (15 kDa, Protein from Human)
39s ribosomal protein l41, mitochondrial (15 kDa, Protein from Human)
28s ribosomal protein s9, mitochondrial (45 kDa, Protein from Human)
28s ribosomal protein s21, mitochondrial (10 kDa, Protein from Human)
28s ribosomal protein s7, mitochondrial (28 kDa, Protein from Human)
39s ribosomal protein l28, mitochondrial (30 kDa, Protein from Human)
28s ribosomal protein s17, mitochondrial (14 kDa, Protein from Human)
28s ribosomal protein s2, mitochondrial (33 kDa, Protein from Human)
39s ribosomal protein l16, mitochondrial (28 kDa, Protein from Human)
Aurora kinase a-interacting protein (22 kDa, Protein from Human)
28s ribosomal protein s27, mitochondrial (47 kDa, Protein from Human)
Ribosomal protein 63, mitochondrial (12 kDa, Protein from Human)
28s ribosomal protein s5, mitochondrial (48 kDa, Protein from Human)
39s ribosomal protein l53, mitochondrial (12 kDa, Protein from Human)
28s ribosomal protein s34, mitochondrial (25 kDa, Protein from Human)
28s ribosomal protein s22, mitochondrial (41 kDa, Protein from Human)
28s ribosomal protein s6, mitochondrial (14 kDa, Protein from Human)
39s ribosomal protein l11, mitochondrial (20 kDa, Protein from Human)
28s ribosomal protein s31, mitochondrial (45 kDa, Protein from Human)
39s ribosomal protein l36, mitochondrial (11 kDa, Protein from Human)
28s ribosomal protein s18c, mitochondrial (15 kDa, Protein from Human)
Coiled-coil-helix-coiled-coil-helix domain-containing protein 1 (13 kDa, Protein from Human)
39s ribosomal protein l17, mitochondrial (20 kDa, Protein from Human)
28s ribosomal protein s28, mitochondrial (20 kDa, Protein from Human)
39s ribosomal protein l24, mitochondrial (24 kDa, Protein from Human)
39s ribosomal protein l46, mitochondrial (31 kDa, Protein from Human)
39s ribosomal protein l2, mitochondrial (33 kDa, Protein from Human)
39s ribosomal protein l3, mitochondrial (38 kDa, Protein from Human)
39s ribosomal protein l13, mitochondrial (20 kDa, Protein from Human)
~{n}-[(3~{s},6~{r},12~{r},15~{s},16~{s},19~{s},22~{s},25~{s})-25-[[(3~{s})-1-azabicyclo[2.2.2]octan-3-yl]sulfanylmethyl]-3-[[4-(dimethylamino)phenyl]methyl]-12-ethyl-4,16-dimethyl-2,5,11,14,18,21,24-heptakis(oxidanylidene)-19-phenyl-17-oxa-1,4,10,13,20-pentazatricyclo[20.4.0.0^{6,10}]hexacosan-15-yl]-3-oxidanyl-pyridine-2-carboxamide (1 kDa, Ligand)
39s ribosomal protein l14, mitochondrial (15 kDa, Protein from Human)
39s ribosomal protein l19, mitochondrial (33 kDa, Protein from Human)
39s ribosomal protein l27, mitochondrial (16 kDa, Protein from Human)
P/e-trna (22 kDa, RNA from Homo sapiens)
39s ribosomal protein l12, mitochondrial (21 kDa, Protein from Human)
28s ribosomal protein s16, mitochondrial (15 kDa, Protein from Human)
39s ribosomal protein l37, mitochondrial (48 kDa, Protein from Human)
39s ribosomal protein l30, mitochondrial (18 kDa, Protein from Human)
28s ribosomal protein s11, mitochondrial (20 kDa, Protein from Human)
Guanosine-5'-triphosphate (523 Da, Ligand)
39s ribosomal protein l38, mitochondrial (44 kDa, Protein from Human)
39s ribosomal protein l39, mitochondrial (38 kDa, Protein from Human)
39s ribosomal protein l51, mitochondrial (15 kDa, Protein from Human)
39s ribosomal protein s18a, mitochondrial (22 kDa, Protein from Human)
39s ribosomal protein l54, mitochondrial (15 kDa, Protein from Human)
39s ribosomal protein l43, mitochondrial (23 kDa, Protein from Human)
Pentatricopeptide repeat domain-containing protein 3, mitochondrial (78 kDa, Protein from Human)
Human mitochondrial ribosome (Complex from Homo sapiens)
Magnesium ion (24 Da, Ligand)
39s ribosomal protein l9, mitochondrial (30 kDa, Protein from Human)
28s ribosomal protein s26, mitochondrial (24 kDa, Protein from Human)
39s ribosomal protein l44, mitochondrial (37 kDa, Protein from Human)
39s ribosomal protein s30, mitochondrial (50 kDa, Protein from Human)
28s ribosomal protein s35, mitochondrial (36 kDa, Protein from Human)
39s ribosomal protein l23, mitochondrial (17 kDa, Protein from Human)
Peptidyl-trna hydrolase ict1, mitochondrial (23 kDa, Protein from Human)
39s ribosomal protein l42, mitochondrial (16 kDa, Protein from Human)
39s ribosomal protein l15, mitochondrial (33 kDa, Protein from Human)
28s ribosomal protein s24, mitochondrial (19 kDa, Protein from Human)
39s ribosomal protein l52, mitochondrial (13 kDa, Protein from Human)
39s ribosomal protein l35, mitochondrial (21 kDa, Protein from Human)
28s ribosomal protein s15, mitochondrial (29 kDa, Protein from Human)
28s ribosomal protein s29, mitochondrial (45 kDa, Protein from Human)
39s ribosomal protein l4, mitochondrial (34 kDa, Protein from Human)
28s ribosomal protein s12, mitochondrial (15 kDa, Protein from Human)
39s ribosomal protein l34, mitochondrial (10 kDa, Protein from Human)
Mitochondrial trnaval (22 kDa, RNA from Homo sapiens)
39s ribosomal protein l33, mitochondrial (7 kDa, Protein from Human)
39s ribosomal protein l45, mitochondrial (35 kDa, Protein from Human)
28s ribosomal protein s18b, mitochondrial (29 kDa, Protein from Human)
28s ribosomal protein s10, mitochondrial (23 kDa, Protein from Human)
Zinc ion (65 Da, Ligand)
28s ribosomal protein s14, mitochondrial (15 kDa, Protein from Human)
28s ribosomal protein s23, mitochondrial (21 kDa, Protein from Human)
39s ribosomal protein l40, mitochondrial (24 kDa, Protein from Human)
39s ribosomal protein l10, mitochondrial (29 kDa, Protein from Human)
39s ribosomal protein l48, mitochondrial (23 kDa, Protein from Human)
16s mitochondrial rrna (500 kDa, RNA from Homo sapiens)
39s ribosomal protein l18, mitochondrial (20 kDa, Protein from Human)
28s ribosomal protein s33, mitochondrial (12 kDa, Protein from Human)
39s ribosomal protein l22, mitochondrial (23 kDa, Protein from Human)
39s ribosomal protein l20, mitochondrial (17 kDa, Protein from Human)
39s ribosomal protein l50, mitochondrial (18 kDa, Protein from Human)
12s mitochondrial rrna (306 kDa, RNA from Homo sapiens)
39s ribosomal protein l47, mitochondrial (29 kDa, Protein from Human)

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EMD-22071

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Legionella pneumophila dDot T4SS OMC

Release date: Oct. 28, 2020
Resolution: 4.2 Å
EM Method: Single-particle
Fitted PDBs: 6x66
Q-score: 0.069

Durie CL, Sheedlo MJ, Chung JM, Byrne BG, Su M, Knight T, Swanson M, Lacy DB, Ohi MD

eLife (2020) 9 [ DOI: doi:10.7554/eLife.59530 Pubmed: 32876045 ]

Sample:

Ddotg dot/icm t4ss (Complex from Legionella pneumophila)
Dotc (34 kDa, Protein from Legionella pneumophila)
Outer membrane protein, ompa family protein (27 kDa, Protein from Legionella pneumophila)
Dotd (17 kDa, Protein from Legionella pneumophila)
Type iv secretion protein icmk (38 kDa, Protein from Legionella pneumophila)
Inner membrane lipoprotein yiad (21 kDa, Protein from Legionella pneumophila)
Type iv secretion system unknown protein fragment (28 kDa, Protein from Legionella pneumophila)

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EMD-11391

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Human mitochondrial ribosome bound to mRNA, A-site tRNA and P-site tRNA

Release date: Oct. 21, 2020
Resolution: 4.0 Å
EM Method: Single-particle
Fitted PDBs: 6zsa
Q-score: 0.373

Aibara S, Singh V, Modelska A, Amunts A

eLife (2020) 9 [ DOI: doi:10.7554/eLife.58362 Pubmed: 32812867 ]

Sample:

28s ribosomal protein s27, mitochondrial (47 kDa, Protein from Homo sapiens)
39s ribosomal protein l2, mitochondrial (33 kDa, Protein from Homo sapiens)
39s ribosomal protein l47, mitochondrial (29 kDa, Protein from Homo sapiens)
39s ribosomal protein l46, mitochondrial (31 kDa, Protein from Homo sapiens)
5-(2-diethylamino-ethanesulfonyl)-21-hydroxy-10-isopropyl-11,19-dimethyl-9,26-dioxa-3,15,28-triaza-tricyclo[23.2.1.00,255]octacosa-1(27),12,17,19,25(28)-pentaene-2,8,14,23-tetraone (690 Da, Ligand)
39s ribosomal protein l43, mitochondrial (23 kDa, Protein from Homo sapiens)
12s mitochondrial rrna (306 kDa, RNA from Homo sapiens)
28s ribosomal protein s10, mitochondrial (23 kDa, Protein from Homo sapiens)
Aurora kinase a-interacting protein (22 kDa, Protein from Homo sapiens)
39s ribosomal protein l3, mitochondrial (38 kDa, Protein from Homo sapiens)
A-site trna (22 kDa, RNA from Homo sapiens)
39s ribosomal protein s30, mitochondrial (50 kDa, Protein from Homo sapiens)
P-site trna (22 kDa, RNA from Homo sapiens)
39s ribosomal protein l32, mitochondrial (21 kDa, Protein from Homo sapiens)
28s ribosomal protein s24, mitochondrial (19 kDa, Protein from Homo sapiens)
28s ribosomal protein s35, mitochondrial (36 kDa, Protein from Homo sapiens)
28s ribosomal protein s28, mitochondrial (20 kDa, Protein from Homo sapiens)
39s ribosomal protein s18a, mitochondrial (22 kDa, Protein from Homo sapiens)
39s ribosomal protein l19, mitochondrial (33 kDa, Protein from Homo sapiens)
39s ribosomal protein l28, mitochondrial (30 kDa, Protein from Homo sapiens)
39s ribosomal protein l53, mitochondrial (12 kDa, Protein from Homo sapiens)
39s ribosomal protein l44, mitochondrial (37 kDa, Protein from Homo sapiens)
39s ribosomal protein l18, mitochondrial (20 kDa, Protein from Homo sapiens)
39s ribosomal protein l17, mitochondrial (20 kDa, Protein from Homo sapiens)
39s ribosomal protein l22, mitochondrial (23 kDa, Protein from Homo sapiens)
39s ribosomal protein l36, mitochondrial (11 kDa, Protein from Homo sapiens)
39s ribosomal protein l15, mitochondrial (33 kDa, Protein from Homo sapiens)
39s ribosomal protein l52, mitochondrial (13 kDa, Protein from Homo sapiens)
28s ribosomal protein s11, mitochondrial (20 kDa, Protein from Homo sapiens)
39s ribosomal protein l55, mitochondrial (15 kDa, Protein from Homo sapiens)
39s ribosomal protein l49, mitochondrial (19 kDa, Protein from Homo sapiens)
28s ribosomal protein s23, mitochondrial (21 kDa, Protein from Homo sapiens)
39s ribosomal protein l14, mitochondrial (15 kDa, Protein from Homo sapiens)
39s ribosomal protein l38, mitochondrial (44 kDa, Protein from Homo sapiens)
39s ribosomal protein l35, mitochondrial (21 kDa, Protein from Homo sapiens)
39s ribosomal protein l33, mitochondrial (7 kDa, Protein from Homo sapiens)
39s ribosomal protein l16, mitochondrial (28 kDa, Protein from Homo sapiens)
~{n}-[(3~{s},6~{r},12~{r},15~{s},16~{s},19~{s},22~{s},25~{s})-25-[[(3~{s})-1-azabicyclo[2.2.2]octan-3-yl]sulfanylmethyl]-3-[[4-(dimethylamino)phenyl]methyl]-12-ethyl-4,16-dimethyl-2,5,11,14,18,21,24-heptakis(oxidanylidene)-19-phenyl-17-oxa-1,4,10,13,20-pentazatricyclo[20.4.0.0^{6,10}]hexacosan-15-yl]-3-oxidanyl-pyridine-2-carboxamide (1 kDa, Ligand)
Mrna (3 kDa, RNA from Homo sapiens)
39s ribosomal protein l13, mitochondrial (20 kDa, Protein from Homo sapiens)
39s ribosomal protein l27, mitochondrial (16 kDa, Protein from Homo sapiens)
39s ribosomal protein l40, mitochondrial (24 kDa, Protein from Homo sapiens)
28s ribosomal protein s34, mitochondrial (25 kDa, Protein from Homo sapiens)
39s ribosomal protein l54, mitochondrial (15 kDa, Protein from Homo sapiens)
Coiled-coil-helix-coiled-coil-helix domain-containing protein 1 (13 kDa, Protein from Homo sapiens)
28s ribosomal protein s9, mitochondrial (45 kDa, Protein from Homo sapiens)
28s ribosomal protein s31, mitochondrial (45 kDa, Protein from Homo sapiens)
Guanosine-5'-triphosphate (523 Da, Ligand)
39s ribosomal protein l45, mitochondrial (35 kDa, Protein from Homo sapiens)
39s ribosomal protein l23, mitochondrial (17 kDa, Protein from Homo sapiens)
28s ribosomal protein s6, mitochondrial (14 kDa, Protein from Homo sapiens)
28s ribosomal protein s26, mitochondrial (24 kDa, Protein from Homo sapiens)
Pentatricopeptide repeat domain-containing protein 3, mitochondrial (78 kDa, Protein from Homo sapiens)
39s ribosomal protein l50, mitochondrial (18 kDa, Protein from Homo sapiens)
28s ribosomal protein s29, mitochondrial (45 kDa, Protein from Homo sapiens)
39s ribosomal protein l48, mitochondrial (23 kDa, Protein from Homo sapiens)
39s ribosomal protein l10, mitochondrial (29 kDa, Protein from Homo sapiens)
39s ribosomal protein l39, mitochondrial (38 kDa, Protein from Homo sapiens)
28s ribosomal protein s25, mitochondrial (20 kDa, Protein from Homo sapiens)
Human mitochondrial ribosome (Complex from Homo sapiens)
Magnesium ion (24 Da, Ligand)
28s ribosomal protein s21, mitochondrial (10 kDa, Protein from Homo sapiens)
28s ribosomal protein s7, mitochondrial (28 kDa, Protein from Homo sapiens)
28s ribosomal protein s16, mitochondrial (15 kDa, Protein from Homo sapiens)
39s ribosomal protein l41, mitochondrial (15 kDa, Protein from Homo sapiens)
28s ribosomal protein s15, mitochondrial (29 kDa, Protein from Homo sapiens)
28s ribosomal protein s14, mitochondrial (15 kDa, Protein from Homo sapiens)
28s ribosomal protein s22, mitochondrial (41 kDa, Protein from Homo sapiens)
28s ribosomal protein s18b, mitochondrial (29 kDa, Protein from Homo sapiens)
28s ribosomal protein s18c, mitochondrial (15 kDa, Protein from Homo sapiens)
39s ribosomal protein l12, mitochondrial (21 kDa, Protein from Homo sapiens)
Peptidyl-trna hydrolase ict1, mitochondrial (23 kDa, Protein from Homo sapiens)
16s mitochondrial rrna (500 kDa, RNA from Homo sapiens)
28s ribosomal protein s12, mitochondrial (15 kDa, Protein from Homo sapiens)
39s ribosomal protein l21, mitochondrial (22 kDa, Protein from Homo sapiens)
39s ribosomal protein l30, mitochondrial (18 kDa, Protein from Homo sapiens)
Mitochondrial trnaval (22 kDa, RNA from Homo sapiens)
39s ribosomal protein l42, mitochondrial (16 kDa, Protein from Homo sapiens)
28s ribosomal protein s17, mitochondrial (14 kDa, Protein from Homo sapiens)
Zinc ion (65 Da, Ligand)
39s ribosomal protein l34, mitochondrial (10 kDa, Protein from Homo sapiens)
39s ribosomal protein l4, mitochondrial (34 kDa, Protein from Homo sapiens)
39s ribosomal protein l20, mitochondrial (17 kDa, Protein from Homo sapiens)
28s ribosomal protein s33, mitochondrial (12 kDa, Protein from Homo sapiens)
39s ribosomal protein l24, mitochondrial (24 kDa, Protein from Homo sapiens)
28s ribosomal protein s5, mitochondrial (48 kDa, Protein from Homo sapiens)
28s ribosomal protein s2, mitochondrial (33 kDa, Protein from Homo sapiens)
39s ribosomal protein l51, mitochondrial (15 kDa, Protein from Homo sapiens)
Growth arrest and dna damage-inducible proteins-interacting protein 1 (25 kDa, Protein from Homo sapiens)
39s ribosomal protein l37, mitochondrial (48 kDa, Protein from Homo sapiens)
39s ribosomal protein l9, mitochondrial (30 kDa, Protein from Homo sapiens)
39s ribosomal protein l11, mitochondrial (20 kDa, Protein from Homo sapiens)
Ribosomal protein 63, mitochondrial (12 kDa, Protein from Homo sapiens)

[Show more]

EMD-11390

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Human mitochondrial ribosome in complex with ribosome recycling factor

Release date: Oct. 14, 2020
Resolution: 4.0 Å
EM Method: Single-particle
Fitted PDBs: 6zs9
Q-score: 0.322

Aibara S, Singh V, Modelska A, Amunts A

eLife (2020) 9 [ DOI: doi:10.7554/eLife.58362 Pubmed: 32812867 ]

Sample:

39s ribosomal protein l36, mitochondrial (11 kDa, Protein from Homo sapiens)
39s ribosomal protein l21, mitochondrial (22 kDa, Protein from Homo sapiens)
Quinupristin (1 kDa, Protein from synthetic construct)
39s ribosomal protein l24, mitochondrial (24 kDa, Protein from Homo sapiens)
28s ribosomal protein s11, mitochondrial (20 kDa, Protein from Homo sapiens)
39s ribosomal protein l37, mitochondrial (48 kDa, Protein from Homo sapiens)
39s ribosomal protein l55, mitochondrial (15 kDa, Protein from Homo sapiens)
28s ribosomal protein s29, mitochondrial (39 kDa, Protein from Homo sapiens)
28s ribosomal protein s6, mitochondrial (14 kDa, Protein from Homo sapiens)
28s ribosomal protein s12, mitochondrial (15 kDa, Protein from Homo sapiens)
12s rrna (305 kDa, RNA from Homo sapiens)
39s ribosomal protein l12, mitochondrial (21 kDa, Protein from Homo sapiens)
39s ribosomal protein l39, mitochondrial (38 kDa, Protein from Homo sapiens)
Pentatricopeptide repeat domain-containing protein 3, mitochondrial (72 kDa, Protein from Homo sapiens)
39s ribosomal protein l32, mitochondrial (21 kDa, Protein from Homo sapiens)
39s ribosomal protein l44, mitochondrial (37 kDa, Protein from Homo sapiens)
39s ribosomal protein l45, mitochondrial (35 kDa, Protein from Homo sapiens)
Human mitochondrial ribosome bound to mrna and a-, p- and e-site trnas (Complex from Homo sapiens)
39s ribosomal protein l30, mitochondrial (18 kDa, Protein from Homo sapiens)
39s ribosomal protein l28, mitochondrial (30 kDa, Protein from Homo sapiens)
39s ribosomal protein l9, mitochondrial (30 kDa, Protein from Homo sapiens)
39s ribosomal protein s30, mitochondrial (50 kDa, Protein from Homo sapiens)
39s ribosomal protein l46, mitochondrial (31 kDa, Protein from Homo sapiens)
Coiled-coil-helix-coiled-coil-helix domain-containing protein 1 (13 kDa, Protein from Homo sapiens)
Ribosome-recycling factor, mitochondrial (21 kDa, Protein from Homo sapiens)
16s rrna (500 kDa, RNA from Homo sapiens)
39s ribosomal protein l19, mitochondrial (33 kDa, Protein from Homo sapiens)
39s ribosomal protein l23, mitochondrial (17 kDa, Protein from Homo sapiens)
Guanosine-5'-triphosphate (523 Da, Ligand)
28s ribosomal protein s25, mitochondrial (20 kDa, Protein from Homo sapiens)
39s ribosomal protein l47, mitochondrial (29 kDa, Protein from Homo sapiens)
39s ribosomal protein l34, mitochondrial (10 kDa, Protein from Homo sapiens)
39s ribosomal protein l42, mitochondrial (16 kDa, Protein from Homo sapiens)
Mt-trnaval (23 kDa, RNA from Homo sapiens)
28s ribosomal protein s10, mitochondrial (23 kDa, Protein from Homo sapiens)
28s ribosomal protein s28, mitochondrial (20 kDa, Protein from Homo sapiens)
39s ribosomal protein l4, mitochondrial (34 kDa, Protein from Homo sapiens)
39s ribosomal protein s18a, mitochondrial (22 kDa, Protein from Homo sapiens)
39s ribosomal protein l20, mitochondrial (17 kDa, Protein from Homo sapiens)
39s ribosomal protein l50, mitochondrial (18 kDa, Protein from Homo sapiens)
28s ribosomal protein s33, mitochondrial (12 kDa, Protein from Homo sapiens)
Mitochondrial ribosomal protein l18, isoform cra_b (20 kDa, Protein from Homo sapiens)
28s ribosomal protein s31, mitochondrial (45 kDa, Protein from Homo sapiens)
39s ribosomal protein l3, mitochondrial (38 kDa, Protein from Homo sapiens)
39s ribosomal protein l38, mitochondrial (44 kDa, Protein from Homo sapiens)
28s ribosomal protein s22, mitochondrial (41 kDa, Protein from Homo sapiens)
28s ribosomal protein s5, mitochondrial (48 kDa, Protein from Homo sapiens)
39s ribosomal protein l49, mitochondrial (19 kDa, Protein from Homo sapiens)
Cdna flj76418, highly similar to homo sapiens mitochondrial ribosomal protein l52 (mrpl52), transcript variant 1, mrna (13 kDa, Protein from Homo sapiens)
39s ribosomal protein l2, mitochondrial (33 kDa, Protein from Homo sapiens)
28s ribosomal protein s18c, mitochondrial (15 kDa, Protein from Homo sapiens)
28s ribosomal protein s15, mitochondrial (29 kDa, Protein from Homo sapiens)
28s ribosomal protein s7, mitochondrial (28 kDa, Protein from Homo sapiens)
39s ribosomal protein l35, mitochondrial (21 kDa, Protein from Homo sapiens)
39s ribosomal protein l51, mitochondrial (15 kDa, Protein from Homo sapiens)
39s ribosomal protein l14, mitochondrial (15 kDa, Protein from Homo sapiens)
28s ribosomal protein s26, mitochondrial (24 kDa, Protein from Homo sapiens)
39s ribosomal protein l53, mitochondrial (12 kDa, Protein from Homo sapiens)
39s ribosomal protein l16, mitochondrial (28 kDa, Protein from Homo sapiens)
Zinc ion (65 Da, Ligand)
28s ribosomal protein s35, mitochondrial (36 kDa, Protein from Homo sapiens)
39s ribosomal protein l54, mitochondrial (15 kDa, Protein from Homo sapiens)
39s ribosomal protein l33, mitochondrial (7 kDa, Protein from Homo sapiens)
39s ribosomal protein l43, mitochondrial (23 kDa, Protein from Homo sapiens)
39s ribosomal protein l11, mitochondrial (20 kDa, Protein from Homo sapiens)
39s ribosomal protein l48, mitochondrial (23 kDa, Protein from Homo sapiens)
28s ribosomal protein s17, mitochondrial (14 kDa, Protein from Homo sapiens)
39s ribosomal protein l40, mitochondrial (24 kDa, Protein from Homo sapiens)
28s ribosomal protein s14, mitochondrial (15 kDa, Protein from Homo sapiens)
Growth arrest and dna damage-inducible proteins-interacting protein 1 (23 kDa, Protein from Homo sapiens)
Magnesium ion (24 Da, Ligand)
5-(2-diethylamino-ethanesulfonyl)-21-hydroxy-10-isopropyl-11,19-dimethyl-9,26-dioxa-3,15,28-triaza-tricyclo[23.2.1.00,255]octacosa-1(27),12,17,19,25(28)-pentaene-2,8,14,23-tetraone (690 Da, Ligand)
39s ribosomal protein l17, mitochondrial (20 kDa, Protein from Homo sapiens)
39s ribosomal protein l15, mitochondrial (33 kDa, Protein from Homo sapiens)
28s ribosomal protein s18b, mitochondrial (29 kDa, Protein from Homo sapiens)
28s ribosomal protein s16, mitochondrial (15 kDa, Protein from Homo sapiens)
Ribosomal protein 63, mitochondrial (12 kDa, Protein from Homo sapiens)
39s ribosomal protein l22, mitochondrial (24 kDa, Protein from Homo sapiens)
28s ribosomal protein s24, mitochondrial (19 kDa, Protein from Homo sapiens)
39s ribosomal protein l27, mitochondrial (16 kDa, Protein from Homo sapiens)
Aurora kinase a-interacting protein (22 kDa, Protein from Homo sapiens)
39s ribosomal protein l13, mitochondrial (20 kDa, Protein from Homo sapiens)
39s ribosomal protein l10, mitochondrial (29 kDa, Protein from Homo sapiens)
Peptidyl-trna hydrolase ict1, mitochondrial (23 kDa, Protein from Homo sapiens)
28s ribosomal protein s21, mitochondrial (10 kDa, Protein from Homo sapiens)
28s ribosomal protein s23, mitochondrial (21 kDa, Protein from Homo sapiens)
39s ribosomal protein l41, mitochondrial (15 kDa, Protein from Homo sapiens)
28s ribosomal protein s34, mitochondrial (25 kDa, Protein from Homo sapiens)
28s ribosomal protein s2, mitochondrial (33 kDa, Protein from Homo sapiens)
28s ribosomal protein s27, mitochondrial (47 kDa, Protein from Homo sapiens)
28s ribosomal protein s9, mitochondrial (45 kDa, Protein from Homo sapiens)

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EMD-11397

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Human mitochondrial ribosome in complex with mRNA, A-site tRNA, P-site tRNA and E-site tRNA

Release date: Oct. 14, 2020
Resolution: 4.0 Å
EM Method: Single-particle
Fitted PDBs: 6zsg
Q-score: 0.373

Aibara S, Singh V, Modelska A, Amunts A

eLife (2020) 9 [ DOI: doi:10.7554/eLife.58362 Pubmed: 32812867 ]

Sample:

28s ribosomal protein s27, mitochondrial (47 kDa, Protein from Homo sapiens)
39s ribosomal protein l2, mitochondrial (33 kDa, Protein from Homo sapiens)
39s ribosomal protein l47, mitochondrial (29 kDa, Protein from Homo sapiens)
39s ribosomal protein l46, mitochondrial (31 kDa, Protein from Homo sapiens)
5-(2-diethylamino-ethanesulfonyl)-21-hydroxy-10-isopropyl-11,19-dimethyl-9,26-dioxa-3,15,28-triaza-tricyclo[23.2.1.00,255]octacosa-1(27),12,17,19,25(28)-pentaene-2,8,14,23-tetraone (690 Da, Ligand)
39s ribosomal protein l43, mitochondrial (23 kDa, Protein from Homo sapiens)
12s mitochondrial rrna (306 kDa, RNA from Homo sapiens)
28s ribosomal protein s10, mitochondrial (23 kDa, Protein from Homo sapiens)
Aurora kinase a-interacting protein (22 kDa, Protein from Homo sapiens)
39s ribosomal protein l3, mitochondrial (38 kDa, Protein from Homo sapiens)
A-site trna (22 kDa, RNA from Homo sapiens)
39s ribosomal protein s30, mitochondrial (50 kDa, Protein from Homo sapiens)
P-site trna (22 kDa, RNA from Homo sapiens)
39s ribosomal protein l32, mitochondrial (21 kDa, Protein from Homo sapiens)
28s ribosomal protein s24, mitochondrial (19 kDa, Protein from Homo sapiens)
28s ribosomal protein s35, mitochondrial (36 kDa, Protein from Homo sapiens)
28s ribosomal protein s28, mitochondrial (20 kDa, Protein from Homo sapiens)
39s ribosomal protein s18a, mitochondrial (22 kDa, Protein from Homo sapiens)
39s ribosomal protein l19, mitochondrial (33 kDa, Protein from Homo sapiens)
39s ribosomal protein l28, mitochondrial (30 kDa, Protein from Homo sapiens)
39s ribosomal protein l53, mitochondrial (12 kDa, Protein from Homo sapiens)
39s ribosomal protein l44, mitochondrial (37 kDa, Protein from Homo sapiens)
39s ribosomal protein l18, mitochondrial (20 kDa, Protein from Homo sapiens)
39s ribosomal protein l17, mitochondrial (20 kDa, Protein from Homo sapiens)
39s ribosomal protein l22, mitochondrial (23 kDa, Protein from Homo sapiens)
39s ribosomal protein l36, mitochondrial (11 kDa, Protein from Homo sapiens)
39s ribosomal protein l15, mitochondrial (33 kDa, Protein from Homo sapiens)
39s ribosomal protein l52, mitochondrial (13 kDa, Protein from Homo sapiens)
28s ribosomal protein s11, mitochondrial (20 kDa, Protein from Homo sapiens)
E-site trna (22 kDa, RNA from Homo sapiens)
39s ribosomal protein l55, mitochondrial (15 kDa, Protein from Homo sapiens)
39s ribosomal protein l49, mitochondrial (19 kDa, Protein from Homo sapiens)
28s ribosomal protein s23, mitochondrial (21 kDa, Protein from Homo sapiens)
39s ribosomal protein l14, mitochondrial (15 kDa, Protein from Homo sapiens)
39s ribosomal protein l38, mitochondrial (44 kDa, Protein from Homo sapiens)
39s ribosomal protein l35, mitochondrial (21 kDa, Protein from Homo sapiens)
39s ribosomal protein l33, mitochondrial (7 kDa, Protein from Homo sapiens)
39s ribosomal protein l16, mitochondrial (28 kDa, Protein from Homo sapiens)
Mrna (3 kDa, RNA from Homo sapiens)
39s ribosomal protein l13, mitochondrial (20 kDa, Protein from Homo sapiens)
39s ribosomal protein l27, mitochondrial (16 kDa, Protein from Homo sapiens)
39s ribosomal protein l40, mitochondrial (24 kDa, Protein from Homo sapiens)
28s ribosomal protein s34, mitochondrial (25 kDa, Protein from Homo sapiens)
39s ribosomal protein l54, mitochondrial (15 kDa, Protein from Homo sapiens)
Coiled-coil-helix-coiled-coil-helix domain-containing protein 1 (13 kDa, Protein from Homo sapiens)
28s ribosomal protein s9, mitochondrial (45 kDa, Protein from Homo sapiens)
28s ribosomal protein s31, mitochondrial (45 kDa, Protein from Homo sapiens)
Guanosine-5'-triphosphate (523 Da, Ligand)
39s ribosomal protein l45, mitochondrial (35 kDa, Protein from Homo sapiens)
39s ribosomal protein l23, mitochondrial (17 kDa, Protein from Homo sapiens)
28s ribosomal protein s6, mitochondrial (14 kDa, Protein from Homo sapiens)
28s ribosomal protein s26, mitochondrial (24 kDa, Protein from Homo sapiens)
Pentatricopeptide repeat domain-containing protein 3, mitochondrial (78 kDa, Protein from Homo sapiens)
39s ribosomal protein l50, mitochondrial (18 kDa, Protein from Homo sapiens)
28s ribosomal protein s29, mitochondrial (45 kDa, Protein from Homo sapiens)
39s ribosomal protein l48, mitochondrial (23 kDa, Protein from Homo sapiens)
39s ribosomal protein l10, mitochondrial (29 kDa, Protein from Homo sapiens)
39s ribosomal protein l39, mitochondrial (38 kDa, Protein from Homo sapiens)
28s ribosomal protein s25, mitochondrial (20 kDa, Protein from Homo sapiens)
Human mitochondrial ribosome (Complex from Homo sapiens)
Magnesium ion (24 Da, Ligand)
28s ribosomal protein s7, mitochondrial (28 kDa, Protein from Homo sapiens)
28s ribosomal protein s16, mitochondrial (15 kDa, Protein from Homo sapiens)
39s ribosomal protein l41, mitochondrial (15 kDa, Protein from Homo sapiens)
28s ribosomal protein s15, mitochondrial (29 kDa, Protein from Homo sapiens)
28s ribosomal protein s14, mitochondrial (15 kDa, Protein from Homo sapiens)
28s ribosomal protein s22, mitochondrial (41 kDa, Protein from Homo sapiens)
28s ribosomal protein s18b, mitochondrial (29 kDa, Protein from Homo sapiens)
28s ribosomal protein s18c, mitochondrial (15 kDa, Protein from Homo sapiens)
39s ribosomal protein l12, mitochondrial (21 kDa, Protein from Homo sapiens)
Peptidyl-trna hydrolase ict1, mitochondrial (23 kDa, Protein from Homo sapiens)
28s ribosomal protein s12, mitochondrial (15 kDa, Protein from Homo sapiens)
39s ribosomal protein l21, mitochondrial (22 kDa, Protein from Homo sapiens)
39s ribosomal protein l30, mitochondrial (18 kDa, Protein from Homo sapiens)
Mitochondrial trnaval (22 kDa, RNA from Homo sapiens)
39s ribosomal protein l42, mitochondrial (16 kDa, Protein from Homo sapiens)
28s ribosomal protein s17, mitochondrial (14 kDa, Protein from Homo sapiens)
Zinc ion (65 Da, Ligand)
39s ribosomal protein l34, mitochondrial (10 kDa, Protein from Homo sapiens)
39s ribosomal protein l4, mitochondrial (34 kDa, Protein from Homo sapiens)
39s ribosomal protein l20, mitochondrial (17 kDa, Protein from Homo sapiens)
28s ribosomal protein s33, mitochondrial (12 kDa, Protein from Homo sapiens)
39s ribosomal protein l24, mitochondrial (24 kDa, Protein from Homo sapiens)
28s ribosomal protein s5, mitochondrial (48 kDa, Protein from Homo sapiens)
28s ribosomal protein s2, mitochondrial (33 kDa, Protein from Homo sapiens)
39s ribosomal protein l51, mitochondrial (15 kDa, Protein from Homo sapiens)
28s ribosomal protein s21, mitochondrial (10 kDa, Protein from Homo sapiens)
Growth arrest and dna damage-inducible proteins-interacting protein 1 (25 kDa, Protein from Homo sapiens)
39s ribosomal protein l37, mitochondrial (48 kDa, Protein from Homo sapiens)
16s mitochondrial rrna (500 kDa, RNA from Homo sapiens)
Quinupristin (1 kDa, Protein from synthetic construct)
39s ribosomal protein l9, mitochondrial (30 kDa, Protein from Homo sapiens)
39s ribosomal protein l11, mitochondrial (20 kDa, Protein from Homo sapiens)
Ribosomal protein 63, mitochondrial (12 kDa, Protein from Homo sapiens)

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EMD-22070

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Legionella pneumophila Dot/Icm T4SS

Release date: Oct. 7, 2020
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 6x65
Q-score: 0.447

Durie CL, Sheedlo MJ, Chung JM, Byrne BG, Su M, Knight T, Swanson M, Lacy DB, Ohi MD

eLife (2020) 9 [ DOI: doi:10.7554/eLife.59530 Pubmed: 32876045 ]

Sample:

Dotc (34 kDa, Protein from Legionella pneumophila)
Type iv secretion system unknown protein fragment (19 kDa, Protein from Legionella pneumophila)
Type iv secretion protein icmk (38 kDa, Protein from Legionella pneumophila)
Legionella pneumophila dot/icm t4ss (Complex from Legionella pneumophila)
Inner membrane lipoprotein yiad (21 kDa, Protein from Legionella pneumophila)
Outer membrane protein, ompa family protein (27 kDa, Protein from Legionella pneumophila)
Dotd (17 kDa, Protein from Legionella pneumophila)

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EMD-22076

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Cryo-EM Structure of the Helicobacter pylori dCag3 OMC

Release date: Oct. 7, 2020
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 6x6k
Q-score: 0.504

Sheedlo MJ, Chung JM, Sawhney N, Durie CL, Cover TL, Ohi MD, Lacy DB

eLife (2020) 9 [ Pubmed: 32876048 DOI: doi:10.7554/eLife.59495 ]

Sample:

Type iv secretion system apparatus protein cagx (60 kDa, Protein from Helicobacter pylori)
Cag pathogenicity island protein (32 kDa, Protein from Helicobacter pylori)
Helicobacter pylori dcag3 cag t4ss omc (Complex from Helicobacter pylori)
Cag pathogenicity island protein (cag7) (219 kDa, Protein from Helicobacter pylori)

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EMD-22068

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Legionella pneumophila Dot T4SS OMC

Release date: Sept. 30, 2020
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 6x62
Q-score: 0.304

Durie CL, Sheedlo MJ, Chung JM, Byrne BG, Su M, Knight T, Swanson M, Lacy DB, Ohi MD

eLife (2020) 9 [ DOI: doi:10.7554/eLife.59530 Pubmed: 32876045 ]

Sample:

Legionella pneumophila dot t4ss omc (Complex from Legionella pneumophila)
Dotc (34 kDa, Protein from Legionella pneumophila)
Type iv secretion system unknown protein fragment (51 kDa, Protein from Legionella pneumophila)
Type iv secretion protein icmk (38 kDa, Protein from Legionella pneumophila)
Inner membrane lipoprotein yiad (21 kDa, Protein from Legionella pneumophila)
Dotd (17 kDa, Protein from Legionella pneumophila)

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