Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 7pd3
Q-score: 0.394
Chandrasekaran V, Desai N, Burton NO, Yang H, Price J, Miska EA, Ramakrishnan V
eLife (2021) 10 [ Pubmed: 34609277 DOI: doi:10.7554/eLife.68806 ]
- 39s ribosomal protein l22, mitochondrial (23 kDa, Protein from Human)
- 39s ribosomal protein l42, mitochondrial (16 kDa, Protein from Human)
- 39s ribosomal protein l38, mitochondrial (44 kDa, Protein from Human)
- 39s ribosomal protein l40, mitochondrial (24 kDa, Protein from Human)
- 39s ribosomal protein l49, mitochondrial (19 kDa, Protein from Human)
- 16s rrna (500 kDa, RNA from Human)
- S-adenosylmethionine (398 Da, Ligand)
- 39s ribosomal protein l20, mitochondrial (17 kDa, Protein from Human)
- 39s ribosomal protein l11, mitochondrial (20 kDa, Protein from Human)
- 39s ribosomal protein l48, mitochondrial (23 kDa, Protein from Human)
- 39s ribosomal protein l13, mitochondrial (20 kDa, Protein from Human)
- 39s ribosomal protein l10, mitochondrial (29 kDa, Protein from Human)
- 39s ribosomal protein l51, mitochondrial (15 kDa, Protein from Human)
- Acyl carrier protein, mitochondrial (17 kDa, Protein from Human)
- Mitochondrial assembly of ribosomal large subunit protein 1 (26 kDa, Protein from Human)
- 39s ribosomal protein l35, mitochondrial (21 kDa, Protein from Human)
- 39s ribosomal protein l34, mitochondrial (10 kDa, Protein from Human)
- 39s ribosomal protein l43, mitochondrial (23 kDa, Protein from Human)
- Uridine-5'-monophosphate (324 Da, Ligand)
- Cytidine-5'-monophosphate (323 Da, Ligand)
- 39s ribosomal protein l30, mitochondrial (18 kDa, Protein from Human)
- Guanosine-5'-monophosphate (363 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
- 39s ribosomal protein l27, mitochondrial (16 kDa, Protein from Human)
- Adenosine-5'-monophosphate (347 Da, Ligand)
- 39s ribosomal protein l47, mitochondrial (29 kDa, Protein from Human)
- Transcription termination factor 4, mitochondrial (44 kDa, Protein from Human)
- Phosphomethylphosphonic acid guanylate ester (521 Da, Ligand)
- 39s ribosomal protein l44, mitochondrial (37 kDa, Protein from Human)
- 39s ribosomal protein l16, mitochondrial (28 kDa, Protein from Human)
- Mitochondrial ribosome-associated gtpase 1 (37 kDa, Protein from Human)
- Ribosomal protein 63, mitochondrial (12 kDa, Protein from Human)
- 39s ribosomal protein l33, mitochondrial (7 kDa, Protein from Human)
- 39s ribosomal protein l23, mitochondrial (17 kDa, Protein from Human)
- 39s ribosomal protein l46, mitochondrial (31 kDa, Protein from Human)
- Mt-trnaval (22 kDa, RNA from Human)
- 39s ribosomal protein l54, mitochondrial (15 kDa, Protein from Human)
- 39s ribosomal protein l39, mitochondrial (38 kDa, Protein from Human)
- 39s ribosomal protein s18a, mitochondrial (22 kDa, Protein from Human)
- 39s ribosomal protein l18, mitochondrial (20 kDa, Protein from Human)
- 39s ribosomal protein l50, mitochondrial (18 kDa, Protein from Human)
- 4'-phosphopantetheine (358 Da, Ligand)
- 39s ribosomal protein l15, mitochondrial (33 kDa, Protein from Human)
- 39s ribosomal protein l45, mitochondrial (35 kDa, Protein from Human)
- Zinc ion (65 Da, Ligand)
- 39s ribosomal protein l36, mitochondrial (11 kDa, Protein from Human)
- 39s ribosomal protein l21, mitochondrial (22 kDa, Protein from Human)
- 39s ribosomal protein l32, mitochondrial (21 kDa, Protein from Human)
- 39s ribosomal protein l24, mitochondrial (24 kDa, Protein from Human)
- Pseudouridine-5'-monophosphate (324 Da, Ligand)
- 39s ribosomal protein l28, mitochondrial (30 kDa, Protein from Human)
- Peptidyl-trna hydrolase ict1, mitochondrial (23 kDa, Protein from Human)
- Growth arrest and dna damage-inducible proteins-interacting protein 1 (25 kDa, Protein from Human)
- 5-methylcytosine rrna methyltransferase nsun4 (43 kDa, Protein from Human)
- 39s ribosomal protein l4, mitochondrial (34 kDa, Protein from Human)
- 39s ribosomal protein l19, mitochondrial (33 kDa, Protein from Human)
- 39s ribosomal protein l53, mitochondrial (12 kDa, Protein from Human)
- 39s ribosomal protein l37, mitochondrial (48 kDa, Protein from Human)
- 39s ribosomal protein l9, mitochondrial (30 kDa, Protein from Human)
- Human mitoribosomal large subunit assembly intermediate (Complex from Homo sapiens)
- 39s ribosomal protein l14, mitochondrial (15 kDa, Protein from Human)
- 39s ribosomal protein l55, mitochondrial (15 kDa, Protein from Human)
- 39s ribosomal protein l3, mitochondrial (38 kDa, Protein from Human)
- Ml65 (2 kDa, Protein from Human)
- O2'-methylguanosine-5'-monophosphate (377 Da, Ligand)
- 39s ribosomal protein s30, mitochondrial (50 kDa, Protein from Human)
- 39s ribosomal protein l52, mitochondrial (13 kDa, Protein from Human)
- 39s ribosomal protein l2, mitochondrial (33 kDa, Protein from Human)
- Mief1 upstream open reading frame protein (8 kDa, Protein from Human)
- 39s ribosomal protein l17, mitochondrial (20 kDa, Protein from Human)
- 39s ribosomal protein l41, mitochondrial (15 kDa, Protein from Human)
Legionella pneumophila Dot/Icm T4SS OMC
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 7mud
Q-score: 0.564
Sheedlo MJ, Durie CL, Chung JM, Chang L, Roberts J, Swanson M, Lacy DB, Ohi MD
eLife (2021) 10 [ DOI: doi:10.7554/eLife.70427 Pubmed: 34519271 ]
- Dotc (34 kDa, Protein from Legionella pneumophila)
- Dotf (29 kDa, Protein from Legionella pneumophila)
- Unknown protein fragment (783 Da, Protein from Legionella pneumophila)
- Duf2807 domain-containing protein (36 kDa, Protein from Legionella pneumophila)
- Outer membrane protein, ompa family protein (27 kDa, Protein from Legionella pneumophila)
- Legionella pneumophila dot/icm t4ss omc (Complex from Legionella pneumophila)
- Neurogenic locus notch (13 kDa, Protein from Legionella pneumophila)
- Dotd (17 kDa, Protein from Legionella pneumophila)
- Type iv secretion protein icmk (38 kDa, Protein from Legionella pneumophila)
- Inner membrane lipoprotein yiad (21 kDa, Protein from Legionella pneumophila)
Legionella pneumophila Dot/Icm T4SS PR
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 7mue
Q-score: 0.601
Sheedlo MJ, Durie CL, Chung JM, Chang L, Roberts J, Swanson M, Lacy DB, Ohi MD
eLife (2021) 10 [ DOI: doi:10.7554/eLife.70427 Pubmed: 34519271 ]
- Dotf (29 kDa, Protein from Legionella pneumophila)
- Unknown protein fragment (4 kDa, Protein from Legionella pneumophila)
- Legionella pneumophila dot/icm t4ss pr (Complex from Legionella pneumophila)
- Type iv secretion protein icmk (38 kDa, Protein from Legionella pneumophila)
- Icme protein (107 kDa, Protein from Legionella pneumophila)
Cryo-EM structure of rabbit RyR1 in the presence of AMP-PCP in nanodisc
Resolution: 4.3 Å
EM Method: Single-particle
Fitted PDBs: 7k0t
Q-score: 0.332
eLife (2022) 11 [ DOI: doi:10.7554/eLife.75568 Pubmed: 35257661 ]
- Rabbit ryr1 with amp-pcp (2 MDa, Complex from Oryctolagus cuniculus)
- Ryr1 (533 kDa, Protein from Oryctolagus cuniculus)
- Phosphomethylphosphonic acid adenylate ester (505 Da, Ligand)
- Zinc ion (65 Da, Ligand)
Human mitochondrial ribosome in complex with P/E-tRNA
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 7og4
Q-score: 0.348
Aibara S, Singh V, Modelska A, Amunts A
eLife (2020) 9 [ DOI: doi:10.7554/eLife.58362 Pubmed: 32812867 ]
- 28s ribosomal protein s25, mitochondrial (20 kDa, Protein from Human)
- 39s ribosomal protein l49, mitochondrial (19 kDa, Protein from Human)
- Growth arrest and dna damage-inducible proteins-interacting protein 1 (25 kDa, Protein from Human)
- 39s ribosomal protein l32, mitochondrial (21 kDa, Protein from Human)
- 39s ribosomal protein l21, mitochondrial (22 kDa, Protein from Human)
- 5-(2-diethylamino-ethanesulfonyl)-21-hydroxy-10-isopropyl-11,19-dimethyl-9,26-dioxa-3,15,28-triaza-tricyclo[23.2.1.00,255]octacosa-1(27),12,17,19,25(28)-pentaene-2,8,14,23-tetraone (690 Da, Ligand)
- 39s ribosomal protein l55, mitochondrial (15 kDa, Protein from Human)
- 39s ribosomal protein l41, mitochondrial (15 kDa, Protein from Human)
- 28s ribosomal protein s9, mitochondrial (45 kDa, Protein from Human)
- 28s ribosomal protein s21, mitochondrial (10 kDa, Protein from Human)
- 28s ribosomal protein s7, mitochondrial (28 kDa, Protein from Human)
- 39s ribosomal protein l28, mitochondrial (30 kDa, Protein from Human)
- 28s ribosomal protein s17, mitochondrial (14 kDa, Protein from Human)
- 28s ribosomal protein s2, mitochondrial (33 kDa, Protein from Human)
- 39s ribosomal protein l16, mitochondrial (28 kDa, Protein from Human)
- Aurora kinase a-interacting protein (22 kDa, Protein from Human)
- 28s ribosomal protein s27, mitochondrial (47 kDa, Protein from Human)
- Ribosomal protein 63, mitochondrial (12 kDa, Protein from Human)
- 28s ribosomal protein s5, mitochondrial (48 kDa, Protein from Human)
- 39s ribosomal protein l53, mitochondrial (12 kDa, Protein from Human)
- 28s ribosomal protein s34, mitochondrial (25 kDa, Protein from Human)
- 28s ribosomal protein s22, mitochondrial (41 kDa, Protein from Human)
- 28s ribosomal protein s6, mitochondrial (14 kDa, Protein from Human)
- 39s ribosomal protein l11, mitochondrial (20 kDa, Protein from Human)
- 28s ribosomal protein s31, mitochondrial (45 kDa, Protein from Human)
- 39s ribosomal protein l36, mitochondrial (11 kDa, Protein from Human)
- 28s ribosomal protein s18c, mitochondrial (15 kDa, Protein from Human)
- Coiled-coil-helix-coiled-coil-helix domain-containing protein 1 (13 kDa, Protein from Human)
- 39s ribosomal protein l17, mitochondrial (20 kDa, Protein from Human)
- 28s ribosomal protein s28, mitochondrial (20 kDa, Protein from Human)
- 39s ribosomal protein l24, mitochondrial (24 kDa, Protein from Human)
- 39s ribosomal protein l46, mitochondrial (31 kDa, Protein from Human)
- 39s ribosomal protein l2, mitochondrial (33 kDa, Protein from Human)
- 39s ribosomal protein l3, mitochondrial (38 kDa, Protein from Human)
- 39s ribosomal protein l13, mitochondrial (20 kDa, Protein from Human)
- ~{n}-[(3~{s},6~{r},12~{r},15~{s},16~{s},19~{s},22~{s},25~{s})-25-[[(3~{s})-1-azabicyclo[2.2.2]octan-3-yl]sulfanylmethyl]-3-[[4-(dimethylamino)phenyl]methyl]-12-ethyl-4,16-dimethyl-2,5,11,14,18,21,24-heptakis(oxidanylidene)-19-phenyl-17-oxa-1,4,10,13,20-pentazatricyclo[20.4.0.0^{6,10}]hexacosan-15-yl]-3-oxidanyl-pyridine-2-carboxamide (1 kDa, Ligand)
- 39s ribosomal protein l14, mitochondrial (15 kDa, Protein from Human)
- 39s ribosomal protein l19, mitochondrial (33 kDa, Protein from Human)
- 39s ribosomal protein l27, mitochondrial (16 kDa, Protein from Human)
- P/e-trna (22 kDa, RNA from Homo sapiens)
- 39s ribosomal protein l12, mitochondrial (21 kDa, Protein from Human)
- 28s ribosomal protein s16, mitochondrial (15 kDa, Protein from Human)
- 39s ribosomal protein l37, mitochondrial (48 kDa, Protein from Human)
- 39s ribosomal protein l30, mitochondrial (18 kDa, Protein from Human)
- 28s ribosomal protein s11, mitochondrial (20 kDa, Protein from Human)
- Guanosine-5'-triphosphate (523 Da, Ligand)
- 39s ribosomal protein l38, mitochondrial (44 kDa, Protein from Human)
- 39s ribosomal protein l39, mitochondrial (38 kDa, Protein from Human)
- 39s ribosomal protein l51, mitochondrial (15 kDa, Protein from Human)
- 39s ribosomal protein s18a, mitochondrial (22 kDa, Protein from Human)
- 39s ribosomal protein l54, mitochondrial (15 kDa, Protein from Human)
- 39s ribosomal protein l43, mitochondrial (23 kDa, Protein from Human)
- Pentatricopeptide repeat domain-containing protein 3, mitochondrial (78 kDa, Protein from Human)
- Human mitochondrial ribosome (Complex from Homo sapiens)
- Magnesium ion (24 Da, Ligand)
- 39s ribosomal protein l9, mitochondrial (30 kDa, Protein from Human)
- 28s ribosomal protein s26, mitochondrial (24 kDa, Protein from Human)
- 39s ribosomal protein l44, mitochondrial (37 kDa, Protein from Human)
- 39s ribosomal protein s30, mitochondrial (50 kDa, Protein from Human)
- 28s ribosomal protein s35, mitochondrial (36 kDa, Protein from Human)
- 39s ribosomal protein l23, mitochondrial (17 kDa, Protein from Human)
- Peptidyl-trna hydrolase ict1, mitochondrial (23 kDa, Protein from Human)
- 39s ribosomal protein l42, mitochondrial (16 kDa, Protein from Human)
- 39s ribosomal protein l15, mitochondrial (33 kDa, Protein from Human)
- 28s ribosomal protein s24, mitochondrial (19 kDa, Protein from Human)
- 39s ribosomal protein l52, mitochondrial (13 kDa, Protein from Human)
- 39s ribosomal protein l35, mitochondrial (21 kDa, Protein from Human)
- 28s ribosomal protein s15, mitochondrial (29 kDa, Protein from Human)
- 28s ribosomal protein s29, mitochondrial (45 kDa, Protein from Human)
- 39s ribosomal protein l4, mitochondrial (34 kDa, Protein from Human)
- 28s ribosomal protein s12, mitochondrial (15 kDa, Protein from Human)
- 39s ribosomal protein l34, mitochondrial (10 kDa, Protein from Human)
- Mitochondrial trnaval (22 kDa, RNA from Homo sapiens)
- 39s ribosomal protein l33, mitochondrial (7 kDa, Protein from Human)
- 39s ribosomal protein l45, mitochondrial (35 kDa, Protein from Human)
- 28s ribosomal protein s18b, mitochondrial (29 kDa, Protein from Human)
- 28s ribosomal protein s10, mitochondrial (23 kDa, Protein from Human)
- Zinc ion (65 Da, Ligand)
- 28s ribosomal protein s14, mitochondrial (15 kDa, Protein from Human)
- 28s ribosomal protein s23, mitochondrial (21 kDa, Protein from Human)
- 39s ribosomal protein l40, mitochondrial (24 kDa, Protein from Human)
- 39s ribosomal protein l10, mitochondrial (29 kDa, Protein from Human)
- 39s ribosomal protein l48, mitochondrial (23 kDa, Protein from Human)
- 16s mitochondrial rrna (500 kDa, RNA from Homo sapiens)
- 39s ribosomal protein l18, mitochondrial (20 kDa, Protein from Human)
- 28s ribosomal protein s33, mitochondrial (12 kDa, Protein from Human)
- 39s ribosomal protein l22, mitochondrial (23 kDa, Protein from Human)
- 39s ribosomal protein l20, mitochondrial (17 kDa, Protein from Human)
- 39s ribosomal protein l50, mitochondrial (18 kDa, Protein from Human)
- 12s mitochondrial rrna (306 kDa, RNA from Homo sapiens)
- 39s ribosomal protein l47, mitochondrial (29 kDa, Protein from Human)