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EMBL

was set up in 1974 as Europe’s flagship laboratory for the life sciences – an intergovernmental organisation with more than 80 independent research groups covering the spectrum of molecular biology:

Research:

perform basic research in molecular biology

Services:

offer vital services to scientists in the member states

Training

scientists, students and visitors at all levels

Transfer

and development of technology

Develop

new instruments and methods

Integrating

life science research in Europe

More about EMBL

Six sites

represent EMBL in Europe.

Barcelona

Tissue biology and disease modelling

Grenoble

Structural biology

Hamburg

Structural biology

Heidelberg

Main laboratory

Hinxton

EMBL-EBI: European Bioinformatics Institute

Rome

Epigenetics and neurobiology

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initial_angle_assignment_type:"MAXIMUM LIKELIHOOD" AND xref_links:"pdb" AND assembly_molecular_weight:{2000000 TO 5000000] AND natural_source_ncbi_code:"2681598" AND natural_source_ncbi_code:"1642"

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EMD-42557

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Cryo-EM structure of the Listeria innocua 70S ribosome (head-swiveled) in complex with pe/E-tRNA (structure I-B)

Release date: Feb. 28, 2024
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 8uu5
Q-score: 0.552

Seely SM, Basu RS, Gagnon MG

Nucleic Acids Res (2024) 52 pp. 4053-4066 [ Pubmed: 38407413 DOI: doi:10.1093/nar/gkae128 ]

Sample:

Listeria innocua 70s ribosome in complex with pe/e-trna (2 MDa, Complex from Listeria innocua)
Small ribosomal subunit protein us5 (17 kDa, Protein from Listeria innocua)
Small ribosomal subunit protein us7 (17 kDa, Protein from Listeria innocua)
Large ribosomal subunit protein ul6 (19 kDa, Protein from Listeria innocua)
Large ribosomal subunit protein ul13 (16 kDa, Protein from Listeria innocua)
Large ribosomal subunit protein ul2 (30 kDa, Protein from Listeria innocua)
Large ribosomal subunit protein bl33 (6 kDa, Protein from Listeria innocua)
Large ribosomal subunit protein bl20 (13 kDa, Protein from Listeria innocua)
5s ribosomal rna (37 kDa, RNA from Listeria innocua)
Large ribosomal subunit protein bl27 (10 kDa, Protein from Listeria innocua)
Large ribosomal subunit protein bl31b (9 kDa, Protein from Listeria innocua)
Small ribosomal subunit protein us12 (15 kDa, Protein from Listeria innocua)
Large ribosomal subunit protein ul16 (16 kDa, Protein from Listeria innocua)
Large ribosomal subunit protein bl19 (13 kDa, Protein from Listeria innocua)
Small ribosomal subunit protein us19 (10 kDa, Protein from Listeria innocua)
Small ribosomal subunit protein us17 (10 kDa, Protein from Listeria innocua)
23s ribosomal rna (951 kDa, RNA from Listeria innocua)
Large ribosomal subunit protein ul30 (6 kDa, Protein from Listeria innocua)
Small ribosomal subunit protein bs6 (11 kDa, Protein from Listeria innocua)
Large ribosomal subunit protein ul3 (22 kDa, Protein from Listeria innocua)
Large ribosomal subunit protein ul15 (15 kDa, Protein from Listeria innocua)
Magnesium ion (24 Da, Ligand)
Small ribosomal subunit protein us8 (14 kDa, Protein from Listeria innocua)
Large ribosomal subunit protein bl21 (11 kDa, Protein from Listeria innocua)
Large ribosomal subunit protein bl34 (5 kDa, Protein from Listeria innocua)
Small ribosomal subunit protein us9 (14 kDa, Protein from Listeria innocua)
Large ribosomal subunit protein bl36 (4 kDa, Protein from Listeria innocua)
Large ribosomal subunit protein ul4 (22 kDa, Protein from Listeria innocua)
Large ribosomal subunit protein ul24 (11 kDa, Protein from Listeria innocua)
Small ribosomal subunit protein us4 (22 kDa, Protein from Listeria innocua)
Large ribosomal subunit protein bl32 (6 kDa, Protein from Listeria innocua)
Small ribosomal subunit protein us15 (10 kDa, Protein from Listeria innocua)
16s ribosomal rna (501 kDa, RNA from Listeria innocua)
Small ribosomal subunit protein us13 (13 kDa, Protein from Listeria innocua)
Large ribosomal subunit protein ul23 (10 kDa, Protein from Listeria innocua)
Large ribosomal subunit protein ul14 (13 kDa, Protein from Listeria innocua)
Large ribosomal subunit protein ul18 (13 kDa, Protein from Listeria innocua)
Small ribosomal subunit protein us11 (13 kDa, Protein from Listeria innocua)
Large ribosomal subunit protein ul22 (12 kDa, Protein from Listeria innocua)
Zinc ion (65 Da, Ligand)
Small ribosomal subunit protein us3 (24 kDa, Protein from Listeria innocua)
F-stop mrna (6 kDa, RNA from Escherichia phage T4)
Large ribosomal subunit protein bl17 (15 kDa, Protein from Listeria innocua)
Large ribosomal subunit protein bl28 (7 kDa, Protein from Listeria innocua)
Small ribosomal subunit protein us2 (28 kDa, Protein from Listeria innocua)
Small ribosomal subunit protein us10 (11 kDa, Protein from Listeria innocua)
Small ribosomal subunit protein bs18 (9 kDa, Protein from Listeria innocua)
Small ribosomal subunit protein bs20 (9 kDa, Protein from Listeria innocua)
Large ribosomal subunit protein ul5 (20 kDa, Protein from Listeria innocua)
Water (18 Da, Ligand)
Large ribosomal subunit protein ul29 (7 kDa, Protein from Listeria innocua)
Small ribosomal subunit protein bs16 (10 kDa, Protein from Listeria innocua)
Large ribosomal subunit protein bl35 (7 kDa, Protein from Listeria innocua)
Pe/e hybrid state phenylalanine trna (24 kDa, RNA from Escherichia coli)
Small ribosomal subunit protein us14 (7 kDa, Protein from Listeria innocua)

[Show more]

EMD-42561

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Cryo-EM structure of the ratcheted Listeria innocua 70S ribosome in complex with p/E-tRNA (structure II-A)

Release date: Feb. 28, 2024
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 8uu6
Q-score: 0.489

Seely SM, Basu RS, Gagnon MG

Nucleic Acids Res (2024) 52 pp. 4053-4066 [ DOI: doi:10.1093/nar/gkae128 Pubmed: 38407413 ]

Sample:

Large ribosomal subunit protein ul18 (13 kDa, Protein from Listeria innocua)
Large ribosomal subunit protein ul4 (22 kDa, Protein from Listeria innocua)
Large ribosomal subunit protein bl31b (9 kDa, Protein from Listeria innocua)
Small ribosomal subunit protein us17 (10 kDa, Protein from Listeria innocua)
Large ribosomal subunit protein bl34 (5 kDa, Protein from Listeria innocua)
Listeria innocua 70s ribosome in complex with p/e-trna (2 MDa, Complex from Listeria innocua)
Small ribosomal subunit protein bs20 (9 kDa, Protein from Listeria innocua)
Large ribosomal subunit protein ul15 (15 kDa, Protein from Listeria innocua)
Large ribosomal subunit protein bl20 (13 kDa, Protein from Listeria innocua)
Small ribosomal subunit protein us5 (17 kDa, Protein from Listeria innocua)
Large ribosomal subunit protein ul6 (19 kDa, Protein from Listeria innocua)
Large ribosomal subunit protein ul22 (12 kDa, Protein from Listeria innocua)
Large ribosomal subunit protein ul2 (30 kDa, Protein from Listeria innocua)
Small ribosomal subunit protein bs16 (10 kDa, Protein from Listeria innocua)
Small ribosomal subunit protein us19 (10 kDa, Protein from Listeria innocua)
Large ribosomal subunit protein bl27 (10 kDa, Protein from Listeria innocua)
Small ribosomal subunit protein bs18 (9 kDa, Protein from Listeria innocua)
Small ribosomal subunit protein us4 (22 kDa, Protein from Listeria innocua)
Large ribosomal subunit protein bl28 (7 kDa, Protein from Listeria innocua)
Large ribosomal subunit protein ul13 (16 kDa, Protein from Listeria innocua)
Potassium ion (39 Da, Ligand)
Large ribosomal subunit protein bl35 (7 kDa, Protein from Listeria innocua)
Zinc ion (65 Da, Ligand)
Small ribosomal subunit protein us8 (14 kDa, Protein from Listeria innocua)
Small ribosomal subunit protein us14 (7 kDa, Protein from Listeria innocua)
P/e hybrid state phenylalanine trna (24 kDa, RNA from Escherichia coli)
Small ribosomal subunit protein us12 (15 kDa, Protein from Listeria innocua)
Small ribosomal subunit protein bs6 (11 kDa, Protein from Listeria innocua)
F-stop mrna (6 kDa, RNA from Escherichia phage T4)
Small ribosomal subunit protein us3 (24 kDa, Protein from Listeria innocua)
Water (18 Da, Ligand)
Small ribosomal subunit protein us7 (17 kDa, Protein from Listeria innocua)
Small ribosomal subunit protein us13 (13 kDa, Protein from Listeria innocua)
Small ribosomal subunit protein us10 (11 kDa, Protein from Listeria innocua)
23s ribosomal rna (951 kDa, RNA from Listeria innocua)
Large ribosomal subunit protein ul14 (13 kDa, Protein from Listeria innocua)
Large ribosomal subunit protein bl21 (11 kDa, Protein from Listeria innocua)
Large ribosomal subunit protein ul16 (16 kDa, Protein from Listeria innocua)
Small ribosomal subunit protein us11 (13 kDa, Protein from Listeria innocua)
Large ribosomal subunit protein ul24 (11 kDa, Protein from Listeria innocua)
Magnesium ion (24 Da, Ligand)
Large ribosomal subunit protein bl36 (4 kDa, Protein from Listeria innocua)
Large ribosomal subunit protein bl17 (15 kDa, Protein from Listeria innocua)
Large ribosomal subunit protein bl19 (13 kDa, Protein from Listeria innocua)
Small ribosomal subunit protein us2 (28 kDa, Protein from Listeria innocua)
16s ribosomal rna (501 kDa, RNA from Listeria innocua)
Large ribosomal subunit protein ul3 (22 kDa, Protein from Listeria innocua)
Large ribosomal subunit protein ul29 (7 kDa, Protein from Listeria innocua)
Large ribosomal subunit protein ul23 (10 kDa, Protein from Listeria innocua)
Large ribosomal subunit protein ul5 (20 kDa, Protein from Listeria innocua)
Large ribosomal subunit protein ul30 (6 kDa, Protein from Listeria innocua)
Large ribosomal subunit protein bl33 (6 kDa, Protein from Listeria innocua)
Small ribosomal subunit protein us15 (10 kDa, Protein from Listeria innocua)
Large ribosomal subunit protein bl32 (6 kDa, Protein from Listeria innocua)
5s ribosomal rna (37 kDa, RNA from Listeria innocua)
Small ribosomal subunit protein us9 (14 kDa, Protein from Listeria innocua)

[Show more]

EMD-42571

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Cryo-EM structure of the Listeria innocua 70S ribosome (head-swiveled) in complex with HflXr and pe/E-tRNA (structure II-C)

Release date: Feb. 28, 2024
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 8uu8
Q-score: 0.496

Seely SM, Basu RS, Gagnon MG

Nucleic Acids Res (2024) 52 pp. 4053-4066 [ Pubmed: 38407413 DOI: doi:10.1093/nar/gkae128 ]

Sample:

Small ribosomal subunit protein us5 (17 kDa, Protein from Listeria innocua)
Small ribosomal subunit protein us7 (17 kDa, Protein from Listeria innocua)
Large ribosomal subunit protein ul6 (19 kDa, Protein from Listeria innocua)
Large ribosomal subunit protein ul13 (16 kDa, Protein from Listeria innocua)
Large ribosomal subunit protein ul2 (30 kDa, Protein from Listeria innocua)
Large ribosomal subunit protein bl33 (6 kDa, Protein from Listeria innocua)
Large ribosomal subunit protein bl20 (13 kDa, Protein from Listeria innocua)
5s ribosomal rna (37 kDa, RNA from Listeria innocua)
Large ribosomal subunit protein bl27 (10 kDa, Protein from Listeria innocua)
Large ribosomal subunit protein bl31b (9 kDa, Protein from Listeria innocua)
Small ribosomal subunit protein us12 (15 kDa, Protein from Listeria innocua)
Large ribosomal subunit protein ul16 (16 kDa, Protein from Listeria innocua)
Large ribosomal subunit protein ul10 (17 kDa, Protein from Listeria innocua)
Large ribosomal subunit protein bl19 (13 kDa, Protein from Listeria innocua)
Small ribosomal subunit protein us19 (10 kDa, Protein from Listeria innocua)
Small ribosomal subunit protein us17 (10 kDa, Protein from Listeria innocua)
23s ribosomal rna (951 kDa, RNA from Listeria innocua)
Large ribosomal subunit protein ul30 (6 kDa, Protein from Listeria innocua)
Small ribosomal subunit protein bs6 (11 kDa, Protein from Listeria innocua)
Large ribosomal subunit protein ul3 (22 kDa, Protein from Listeria innocua)
Large ribosomal subunit protein ul15 (15 kDa, Protein from Listeria innocua)
Magnesium ion (24 Da, Ligand)
Gtpase hflx (47 kDa, Protein from Listeria monocytogenes EGD-e)
Small ribosomal subunit protein us8 (14 kDa, Protein from Listeria innocua)
Large ribosomal subunit protein ul11 (14 kDa, Protein from Listeria innocua)
Phosphomethylphosphonic acid guanylate ester (521 Da, Ligand)
Large ribosomal subunit protein bl21 (11 kDa, Protein from Listeria innocua)
Large ribosomal subunit protein bl34 (5 kDa, Protein from Listeria innocua)
Small ribosomal subunit protein us9 (14 kDa, Protein from Listeria innocua)
Large ribosomal subunit protein bl36 (4 kDa, Protein from Listeria innocua)
Large ribosomal subunit protein ul4 (22 kDa, Protein from Listeria innocua)
Large ribosomal subunit protein ul24 (11 kDa, Protein from Listeria innocua)
Small ribosomal subunit protein us4 (22 kDa, Protein from Listeria innocua)
Large ribosomal subunit protein bl32 (6 kDa, Protein from Listeria innocua)
Small ribosomal subunit protein us15 (10 kDa, Protein from Listeria innocua)
16s ribosomal rna (501 kDa, RNA from Listeria innocua)
Listeria innocua 70s ribosome in complex with hflxr and pe/e-trna (2 MDa, Complex from Listeria innocua)
Small ribosomal subunit protein us13 (13 kDa, Protein from Listeria innocua)
Large ribosomal subunit protein ul14 (13 kDa, Protein from Listeria innocua)
Large ribosomal subunit protein ul23 (10 kDa, Protein from Listeria innocua)
Large ribosomal subunit protein ul18 (13 kDa, Protein from Listeria innocua)
Small ribosomal subunit protein us11 (13 kDa, Protein from Listeria innocua)
Large ribosomal subunit protein ul22 (12 kDa, Protein from Listeria innocua)
Zinc ion (65 Da, Ligand)
Small ribosomal subunit protein us3 (24 kDa, Protein from Listeria innocua)
F-stop mrna (6 kDa, RNA from Escherichia phage T4)
Large ribosomal subunit protein bl17 (15 kDa, Protein from Listeria innocua)
Large ribosomal subunit protein bl28 (7 kDa, Protein from Listeria innocua)
Small ribosomal subunit protein us2 (28 kDa, Protein from Listeria innocua)
Small ribosomal subunit protein us10 (11 kDa, Protein from Listeria innocua)
Small ribosomal subunit protein bs18 (9 kDa, Protein from Listeria innocua)
Small ribosomal subunit protein bs20 (9 kDa, Protein from Listeria innocua)
Large ribosomal subunit protein ul5 (20 kDa, Protein from Listeria innocua)
Water (18 Da, Ligand)
Large ribosomal subunit protein ul29 (7 kDa, Protein from Listeria innocua)
Small ribosomal subunit protein bs16 (10 kDa, Protein from Listeria innocua)
Large ribosomal subunit protein bl35 (7 kDa, Protein from Listeria innocua)
Pe/e hybrid state phenylalanine trna (24 kDa, RNA from Escherichia coli)
Small ribosomal subunit protein us14 (7 kDa, Protein from Listeria innocua)

[Show more]

EMD-42576

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Cryo-EM structure of the ratcheted Listeria innocua 70S ribosome (head-swiveled) in complex with HflXr and pe/E-tRNA (structure II-D)

Release date: Feb. 28, 2024
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 8uu9
Q-score: 0.495

Seely SM, Basu RS, Gagnon MG

Nucleic Acids Res (2024) 52 pp. 4053-4066 [ Pubmed: 38407413 DOI: doi:10.1093/nar/gkae128 ]

Sample:

Small ribosomal subunit protein us5 (17 kDa, Protein from Listeria innocua)
Small ribosomal subunit protein us7 (17 kDa, Protein from Listeria innocua)
Large ribosomal subunit protein ul6 (19 kDa, Protein from Listeria innocua)
Large ribosomal subunit protein ul13 (16 kDa, Protein from Listeria innocua)
Large ribosomal subunit protein ul2 (30 kDa, Protein from Listeria innocua)
Large ribosomal subunit protein bl33 (6 kDa, Protein from Listeria innocua)
Large ribosomal subunit protein bl20 (13 kDa, Protein from Listeria innocua)
5s ribosomal rna (37 kDa, RNA from Listeria innocua)
Large ribosomal subunit protein bl27 (10 kDa, Protein from Listeria innocua)
Large ribosomal subunit protein bl31b (9 kDa, Protein from Listeria innocua)
Small ribosomal subunit protein us12 (15 kDa, Protein from Listeria innocua)
Large ribosomal subunit protein ul16 (16 kDa, Protein from Listeria innocua)
Large ribosomal subunit protein bl19 (13 kDa, Protein from Listeria innocua)
Small ribosomal subunit protein us19 (10 kDa, Protein from Listeria innocua)
Small ribosomal subunit protein us17 (10 kDa, Protein from Listeria innocua)
23s ribosomal rna (951 kDa, RNA from Listeria innocua)
Large ribosomal subunit protein ul30 (6 kDa, Protein from Listeria innocua)
Small ribosomal subunit protein bs6 (11 kDa, Protein from Listeria innocua)
Large ribosomal subunit protein ul3 (22 kDa, Protein from Listeria innocua)
Large ribosomal subunit protein ul15 (15 kDa, Protein from Listeria innocua)
Magnesium ion (24 Da, Ligand)
Gtpase hflx (47 kDa, Protein from Listeria monocytogenes EGD-e)
Small ribosomal subunit protein us8 (14 kDa, Protein from Listeria innocua)
Phosphomethylphosphonic acid guanylate ester (521 Da, Ligand)
Large ribosomal subunit protein bl21 (11 kDa, Protein from Listeria innocua)
Large ribosomal subunit protein bl34 (5 kDa, Protein from Listeria innocua)
Small ribosomal subunit protein us9 (14 kDa, Protein from Listeria innocua)
Large ribosomal subunit protein bl36 (4 kDa, Protein from Listeria innocua)
Large ribosomal subunit protein ul4 (22 kDa, Protein from Listeria innocua)
Large ribosomal subunit protein ul24 (11 kDa, Protein from Listeria innocua)
Small ribosomal subunit protein us4 (22 kDa, Protein from Listeria innocua)
Pe/e hybrid state phenylalanine trna (24 kDa, RNA from Escherichia coli)
Small ribosomal subunit protein us15 (10 kDa, Protein from Listeria innocua)
Large ribosomal subunit protein bl32 (6 kDa, Protein from Listeria innocua)
16s ribosomal rna (501 kDa, RNA from Listeria innocua)
Listeria innocua 70s ribosome in complex with hflxr and pe/e-trna (2 MDa, Complex from Listeria innocua)
Small ribosomal subunit protein us13 (13 kDa, Protein from Listeria innocua)
Large ribosomal subunit protein ul14 (13 kDa, Protein from Listeria innocua)
Large ribosomal subunit protein ul23 (10 kDa, Protein from Listeria innocua)
Large ribosomal subunit protein ul18 (13 kDa, Protein from Listeria innocua)
Small ribosomal subunit protein us11 (13 kDa, Protein from Listeria innocua)
Large ribosomal subunit protein ul22 (12 kDa, Protein from Listeria innocua)
Zinc ion (65 Da, Ligand)
Small ribosomal subunit protein us3 (24 kDa, Protein from Listeria innocua)
F-stop mrna (6 kDa, RNA from Escherichia phage T4)
Large ribosomal subunit protein bl17 (15 kDa, Protein from Listeria innocua)
Large ribosomal subunit protein bl28 (7 kDa, Protein from Listeria innocua)
Small ribosomal subunit protein us2 (28 kDa, Protein from Listeria innocua)
Small ribosomal subunit protein us10 (11 kDa, Protein from Listeria innocua)
Small ribosomal subunit protein bs18 (9 kDa, Protein from Listeria innocua)
Small ribosomal subunit protein bs20 (9 kDa, Protein from Listeria innocua)
Large ribosomal subunit protein ul5 (20 kDa, Protein from Listeria innocua)
Water (18 Da, Ligand)
Large ribosomal subunit protein ul29 (7 kDa, Protein from Listeria innocua)
Small ribosomal subunit protein bs16 (10 kDa, Protein from Listeria innocua)
Large ribosomal subunit protein bl35 (7 kDa, Protein from Listeria innocua)
Small ribosomal subunit protein us14 (7 kDa, Protein from Listeria innocua)

[Show more]

Sort by: Download

Showing 1 - 4 of 4. Page 1 of 1

Display: Statistics

Download

Select database:

EMDB [4]

Format:

Select the script type:

Shell (Unix-based) Batch (Windows-based)

Preview first 10

Field: