Nucleotide-depleted F1 domain of FoF1-ATPase from Bacillus PS3, state1
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 7xkh
Q-score: 0.545
Nakano A, Kishikawa JI, Nakanishi A, Mitsuoka K, Yokoyama K
Pnas Nexus (2022) 1 pp. pgac116-pgac116 [ DOI: doi:10.1093/pnasnexus/pgac116 Pubmed: 36741449 ]
- Fof1 from bacillus ps3 (530 kDa, Complex from Bacillus sp. PS3)
- Atp synthase gamma chain (31 kDa, Protein from Bacillus sp. PS3)
- Atp synthase subunit beta (53 kDa, Protein from Bacillus sp. PS3)
- Hydrogenphosphate ion (95 Da, Ligand)
- Atp synthase epsilon chain (14 kDa, Protein from Bacillus sp. PS3)
- Atp synthase subunit alpha (54 kDa, Protein from Bacillus sp. PS3)
V1EG domain of V/A-ATPase from Thermus thermophilus at saturated ATP-gamma-S condition, state1-1
Resolution: 2.7 Å
EM Method: Single-particle
Fitted PDBs: 7vaw
Q-score: 0.557
Kishikawa J, Nakanishi A, Nakano A, Saeki S, Furuta A, Kato T, Mistuoka K, Yokoyama K
Nat Commun (2022) 13 pp. 1213-1213 [ Pubmed: 35260556 DOI: doi:10.1038/s41467-022-28832-5 ]
- V-type atp synthase beta chain (53 kDa, Protein from Thermus thermophilus HB8)
- V-type atp synthase subunit g (13 kDa, Protein from Thermus thermophilus HB8)
- Magnesium ion (24 Da, Ligand)
- Phosphothiophosphoric acid-adenylate ester (523 Da, Ligand)
- V-type atp synthase subunit d (24 kDa, Protein from Thermus thermophilus HB8)
- V-type atp synthase subunit f (11 kDa, Protein from Thermus thermophilus HB8)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- V-type atp synthase alpha chain (63 kDa, Protein from Thermus thermophilus HB8)
- V1eg domain of v/a-atpase from thermus thermophilus at saturated atp-gamma-s condition, state1-1 (500 kDa, Complex from Thermus thermophilus HB8)
- V-type atp synthase subunit e (20 kDa, Protein from Thermus thermophilus HB8)
V1EG of V/A-ATPase from Thermus thermophilus at saturated ATP-gamma-S condition, state1-2
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 7vax
Q-score: 0.537
Kishikawa J, Nakanishi A, Nakano A, Saeki S, Furuta A, Kato T, Mistuoka K, Yokoyama K
Nat Commun (2022) 13 pp. 1213-1213 [ Pubmed: 35260556 DOI: doi:10.1038/s41467-022-28832-5 ]
- V/a-atpase from thermus thermophilus at saturated atp-gamma-s condition, state1-2 (500 kDa, Complex from Thermus thermophilus HB8)
- Magnesium ion (24 Da, Ligand)
- V-type atp synthase subunit d (24 kDa, Protein from Thermus thermophilus HB8)
- V-type atp synthase subunit e (20 kDa, Protein from Thermus thermophilus HB8)
- V-type atp synthase subunit g (13 kDa, Protein from Thermus thermophilus HB8)
- V-type atp synthase beta chain (53 kDa, Protein from Thermus thermophilus HB8)
- V-type atp synthase subunit f (11 kDa, Protein from Thermus thermophilus HB8)
- Phosphothiophosphoric acid-adenylate ester (523 Da, Ligand)
- V-type atp synthase alpha chain (63 kDa, Protein from Thermus thermophilus HB8)
- Adenosine-5'-diphosphate (427 Da, Ligand)
V1EG domain of V/A-ATPase from Thermus thermophilus at saturated ATP-gamma-S condition, state2
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 7vay
Q-score: 0.479
Kishikawa J, Nakanishi A, Nakano A, Saeki S, Furuta A, Kato T, Mistuoka K, Yokoyama K
Nat Commun (2022) 13 pp. 1213-1213 [ Pubmed: 35260556 DOI: doi:10.1038/s41467-022-28832-5 ]
- V1eg domain of v/a-atpase from thermus thermophilus at saturated atp-gamma-s condition, state2 (500 kDa, Complex from Thermus thermophilus HB8)
- V-type atp synthase beta chain (53 kDa, Protein from Thermus thermophilus HB8)
- V-type atp synthase subunit g (13 kDa, Protein from Thermus thermophilus HB8)
- Magnesium ion (24 Da, Ligand)
- Phosphothiophosphoric acid-adenylate ester (523 Da, Ligand)
- V-type atp synthase subunit d (24 kDa, Protein from Thermus thermophilus HB8)
- V-type atp synthase subunit f (11 kDa, Protein from Thermus thermophilus HB8)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- V-type atp synthase alpha chain (63 kDa, Protein from Thermus thermophilus HB8)
- V-type atp synthase subunit e (20 kDa, Protein from Thermus thermophilus HB8)
V1EG domain of V/A-ATPase from Thermus thermophilus at saturated ATP-gamma-S condition, state3
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 7vb0
Q-score: 0.45
Kishikawa J, Nakanishi A, Nakano A, Saeki S, Furuta A, Kato T, Mistuoka K, Yokoyama K
Nat Commun (2022) 13 pp. 1213-1213 [ Pubmed: 35260556 DOI: doi:10.1038/s41467-022-28832-5 ]
- V1eg domain of v/a-atpase from thermus thermophilus at saturated atp-gamma-s condition, state3 (500 kDa, Complex from Thermus thermophilus HB8)
- Magnesium ion (24 Da, Ligand)
- V-type atp synthase subunit d (24 kDa, Protein from Thermus thermophilus HB8)
- V-type atp synthase subunit e (20 kDa, Protein from Thermus thermophilus HB8)
- V-type atp synthase subunit g (13 kDa, Protein from Thermus thermophilus HB8)
- V-type atp synthase beta chain (53 kDa, Protein from Thermus thermophilus HB8)
- V-type atp synthase subunit f (11 kDa, Protein from Thermus thermophilus HB8)
- Phosphothiophosphoric acid-adenylate ester (523 Da, Ligand)
- V-type atp synthase alpha chain (63 kDa, Protein from Thermus thermophilus HB8)
- Adenosine-5'-diphosphate (427 Da, Ligand)